1. Information
    majorVersion:3 minorVersion:0 projectID:local projectVersionID:undef fileName:/home/ikeda/eclipse/workspace/macrophage/csml/ok/csml/12960230.csml convertedTime:2009.07.01.10:41

  2. Original Literature
  3. Model OverView
  4. Model Abstracts
  5. Model Detail
  6. Download
Original Literature Model OverView
Publication
Title Monocyte/macrophage traffic in HIV and SIV encephalitis.
Authors Kim WK, Corey S, Alvarez X, Williams K.
Affiliation Division of Pathogenesis, Beth Israel Deaconess Medical Center, Harvard MedicalSchool, Boston, MA 02215, USA.
Abstract This short review focuses on the role of central nervous system (CNS)perivascular macrophages as targets of productive infection of the CNS. Datadiscussed include the importance of these cells as early targets of infectionand their productive infection with AIDS. Many of the immune molecules onperivascular macrophages are also found on subsets of bloodmonocyte/macrophages, some of which are expanded during human immunodeficiencyvirus (HIV) infection. These observations paired with the known bone marrow (BM)origin of perivascular macrophages and the BM as a site of HIV infectionunderscore the importance of the study of monocyte populations in the BM andblood, which are activated and infected as a source of virus that enters theCNS. Data presented and discussed herein suggest a role of HIV-infectedBM-derived monocytes as "Trojan horse" cells that traffic to the CNS to becomeperivascular macrophages. The study of such cells including their timing ofinfection, activation, and traffic and the role of HIV-specific immune responsescontrolling their accumulation in the CNS warrant study with regard to CNSneuropathogenesis.
PMID 12960230
Model Abstract

Entity

G010237:HLA-DRA G010361:PCNA G011389:CD14 G024648:CD69 MO000000100:M-CSF MO000018132:CD14 e1: e10: e11:CD16 e12:gp120 e13:CD45 e2: e3: e4: e5:SIV RNA e50: e51: e52: e53: e54: e55: e56: e57: e58: e59: e6:HIV protein e60: e61: e62: e7: e8: e9:

Process

p1 p10 p11 p2 p3 p4 p5 p6 p7 p8 p9
Model Detail
261.0, 669.0
30.0, 30.0

HLA-DRA

--

G010237

cso30:c:mRNA

cso30:i:CC_Nucleoplasm

--

p11

--

true true true true

csml-variable:Double

m93226

10

false

infinite

0

unit false false false
TRANSFACG010237

--

Go back
267.0, 434.0
27.0, 27.0

PCNA

--

G010361

cso30:c:mRNA

cso30:i:CC_CellComponent

--

p1 p3

p2

true true true true

csml-variable:Double

m93337

10

false

infinite

0

unit false false false
TRANSFACG010361

--

Go back
383.0, 575.0
25.5, 25.5

CD14

--

G011389

cso30:c:mRNA

cso30:i:CC_CellComponent

--

p7

p6

true true true true

csml-variable:Double

m94268

10

false

infinite

0

unit false false false
TRANSFACG011389

--

Go back
261.0, 625.0
29.0, 29.0

CD69

--

G024648

cso30:c:mRNA

cso30:i:CC_CellComponent

--

p9

--

true true true true

csml-variable:Double

m103353

10

false

infinite

0

unit false false false
TRANSFACG024648

--

Go back
644.0, 536.0
31.0, 31.0

M-CSF

--

MO000000100

cso30:c:Protein

cso30:i:CC_CellComponent

--

--

p5

true true true true

csml-variable:Double

m89

10

false

infinite

0

unit false false false
InterProIPR008001
TRANSPATHMO000000100

--

Go back
477.0, 629.0
30.0, 30.0

CD14

--

MO000018132

cso30:c:Protein

cso30:i:CC_CellComponent

--

p6

--

true true true true

csml-variable:Double

m2828

10

false

infinite

0

unit false false false
InterProIPR001611
TRANSPATHMO000018132

--

Go back
75.15499651538497, 98.33664771361464
498.12847478313256, 723.2825453851079

--

e1

cso30:c:EntityBiologicalCompartment

cso30:i:CC_PlasmaMembrane

--

--

--

true true true true

csml-variable:Double

m1

0

false

infinite

0

unit false true false

--

Go back
78.95442968637441, 132.3916865078456
482.8390321947132, 679.2187514123439

--

e10

cso30:c:EntityBiologicalCompartment

cso30:i:CC_Cytosol

--

--

--

true true true true

csml-variable:Double

m10

0

false

infinite

0

unit false true false

--

Go back
256.0, 504.0
39.39446366782008, 21.010380622837378

CD16

--

e11

cso30:c:mRNA

cso30:i:CC_Nucleoplasm

--

p4 p5 p8

--

true true true true

csml-variable:Double

m11

0

false

infinite

0

unit false false false

--

Go back
644.0, 503.5
32.00000000000001, 24.000000000000004

gp120

--

e12

cso30:c:Protein

cso30:i:CC_Cytosol

--

--

p4

true true true true

csml-variable:Double

m12

0

false

infinite

0

unit false false false

--

Go back
256.0, 593.0
40.640138408304495, 21.67474048442907

CD45

--

e13

cso30:c:mRNA

cso30:i:CC_Nucleoplasm

--

p10

--

true true true true

csml-variable:Double

m13

0

false

infinite

0

unit false false false

--

Go back
75.15499651538497, 98.33664771361464
498.12847478313256, 723.2825453851079

--

e2

cso30:c:EntityBiologicalCompartment

cso30:i:CC_PlasmaMembrane_ExternalSideOfPlasmaMembrane_

--

--

--

true true true true

csml-variable:Double

m2

0

false

infinite

0

unit false true false

--

Go back
85.11756601104761, 108.29921720927734
478.20333579180704, 703.3574063937831

--

e3

cso30:c:EntityBiologicalCompartment

cso30:i:CC_PlasmaMembrane_IntegralToPlasmaMembrane_

--

--

--

true true true true

csml-variable:Double

m3

0

false

infinite

0

unit false true false

--

Go back
103.54831957802361, 125.73371382668687
441.3418286578555, 668.4884131589633

--

e4

cso30:c:EntityBiologicalCompartment

cso30:i:CC_PlasmaMembrane_InternalSideOfPlasmaMembrane_

--

--

--

true true true true

csml-variable:Double

m4

0

false

infinite

0

unit false true false

--

Go back
460.5, 431.0
31.630188679245283, 34.505660377358495

SIV RNA

--

e5

cso30:c:RnaOther

cso30:i:CC_Cytosol

--

--

p1

true true true true

csml-variable:Double

m5

0

false

infinite

0

unit false false false

--

Go back
121.85482399673313, 413.1074142660329
335.7110303716731, 304.4530200949816

--

e50

cso30:c:EntityBiologicalCompartment

cso30:i:CC_NuclearEnvelopeLumen

--

--

--

true true true true

csml-variable:Double

m50

0

false

infinite

0

unit false true false

--

Go back
158.11411591769576, 420.322508237211
196.30030453762646, 295.07561701197363

--

e51

cso30:c:EntityBiologicalCompartment

cso30:i:CC_NuclearPore

--

--

--

true true true true

csml-variable:Double

m51

0

false

infinite

0

unit false true false

--

Go back
126.23094543546993, 417.1709556020027
326.95878749419944, 296.32593742304147

--

e52

cso30:c:EntityBiologicalCompartment

cso30:i:CC_NuclearInnerMembrane

--

--

--

true true true true

csml-variable:Double

m52

0

false

infinite

0

unit false true false

--

Go back
126.85610564100391, 417.7961158075365
325.70846708313144, 295.07561701197363

--

e53

cso30:c:EntityBiologicalCompartment

cso30:i:CC_NuclearLumen

--

--

--

true true true true

csml-variable:Double

m53

0

false

infinite

0

unit false true false

--

Go back
121.85482399673313, 413.1074142660329
335.7110303716731, 304.4530200949816

--

e54

cso30:c:EntityBiologicalCompartment

cso30:i:CC_NuclearOuterMembrane

--

--

--

true true true true

csml-variable:Double

m54

0

false

infinite

0

unit false true false

--

Go back
121.85482399673313, 413.1074142660329
335.7110303716731, 304.4530200949816

--

e55

cso30:c:EntityBiologicalCompartment

cso30:i:CC_Nucleus

--

--

--

true true true true

csml-variable:Double

m55

0

false

infinite

0

unit false true false

--

Go back
126.85610564100391, 417.7961158075365
325.70846708313144, 295.07561701197363

--

e56

cso30:c:EntityBiologicalCompartment

cso30:i:CC_Nucleoplasm

--

--

--

true true true true

csml-variable:Double

m56

0

false

infinite

0

unit false true false

--

Go back
366.91762456599906, 538.1394553728013
20.973380611998117, 18.986428764545693

--

e57

cso30:c:EntityBiologicalCompartment

cso30:i:CC_NuclearBody

--

--

--

true true true true

csml-variable:Double

m57

0

false

infinite

0

unit false true false

--

Go back
311.90352647902114, 625.6618841475394
59.39021952571497, 53.763777675910504

--

e58

cso30:c:EntityBiologicalCompartment

cso30:i:CC_Nucleolus

--

--

--

true true true true

csml-variable:Double

m58

0

false

infinite

0

unit false true false

--

Go back
121.85482399673313, 413.1074142660329
335.7110303716731, 304.4530200949816

--

e59

cso30:c:EntityBiologicalCompartment

cso30:i:CC_NuclearEnvelope

--

--

--

true true true true

csml-variable:Double

m59

0

false

infinite

0

unit false true false

--

Go back
596.0, 471.5
32.32, 24.240000000000002

HIV protein

--

e6

cso30:c:Protein

cso30:i:CC_Extracellular

--

--

p3 p6

true true true true

csml-variable:Double

m6

0

false

infinite

0

unit false false false

--

Go back
200.98002493938537, 548.4038206802264
10.631475056327332, 5.118858360453906

--

e60

cso30:c:EntityBiologicalCompartment

cso30:i:CC_Chromatin

--

--

--

true true true true

csml-variable:Double

m60

0

false

infinite

0

unit false true false

--

Go back
200.62500989399715, 533.1381737285301
36.38904215230004, 65.50027587414016

--

e61

cso30:c:EntityBiologicalCompartment

cso30:i:CC_NuclearChromosome

--

--

--

true true true true

csml-variable:Double

m61

0

false

infinite

0

unit false true false

--

Go back
215.89065684569414, 575.7399791751253
5.680240726212684, 5.68024072621269

--

e62

cso30:c:EntityBiologicalCompartment

cso30:i:CC_NuclearCentromere

--

--

--

true true true true

csml-variable:Double

m62

0

false

infinite

0

unit false true false

--

Go back
79.69967811218879, 102.24719385404529
488.50884249814953, 692.2044115102934

--

e7

cso30:c:EntityBiologicalCompartment

cso30:i:CC_Cell

--

--

--

true true true true

csml-variable:Double

m7

0

false

infinite

0

unit false true false

--

Go back
85.44492653800312, 111.46393283474572
468.63235356766586, 680.4541773802512

--

e8

cso30:c:EntityBiologicalCompartment

cso30:i:CC_Cell_WithoutCellWall_

--

--

--

true true true true

csml-variable:Double

m8

0

false

infinite

0

unit false true false

--

Go back
87.09892234017474, 124.68067181544622
466.49278981266565, 671.5301913502982

--

e9

cso30:c:EntityBiologicalCompartment

cso30:i:CC_Cytoplasm

--

--

--

true true true true

csml-variable:Double

m9

0

false

infinite

0

unit false true false

--

Go back
324.0, 435.0
25.0, 25.0

p1

p1

cso30:i:ME_GeneExpression

cso30:i:CC_Nucleoplasm

--

true true true true

--

and

mass

coefficient1:0.1
coefficient2:1.0
stoichiometry:c1 : 1
stoichiometry:c2 : 1

m5*0.1

nodelay

--

true

0

false

PMID: 12960230, 12163382 We have recently reported that CNS perivascular macrophages that are productively infected with SIV also strongly express the proliferation cellular nuclear antigen (PCNA). PMID: 12960230, 12163382, 7522384 In our studies, we demonstrated that expression of PNCA correlates well with SIV RNA in the same cell and that the cells that are PCNA-positive are not undergoing significant, detectable cell proliferation but are more likely undergoing DNA repair, a process that might be induced by viral infection.

Go back
319.0, 591.0
25.0, 25.0

p10

p10

cso30:i:ME_GeneExpression

cso30:i:CC_Nucleoplasm

--

--

e13

true true true true

--

and

mass

coefficient1:0.1
coefficient2:1.0
stoichiometry:c16 : 1

1.0*0.1

nodelay

--

true

0

false

PMID: 12960230, 3276004, 8083615, 11596124 In addition to CD14 and CD45 markers used to differentiate between parenchymal microglia and perivascular macrophages, CD16, CD69, and human leukocyte antigen-DR are expressed on perivascular macrophages.

Go back
331.0, 671.0
25.0, 25.0

p11

p11

cso30:i:ME_GeneExpression

cso30:i:CC_Nucleoplasm

--

--

G010237

true true true true

--

and

mass

coefficient1:0.1
coefficient2:1.0
stoichiometry:c17 : 1

1.0*0.1

nodelay

--

true

0

false

PMID: 12960230, 3276004, 8083615, 11596124 In addition to CD14 and CD45 markers used to differentiate between parenchymal microglia and perivascular macrophages, CD16, CD69, and human leukocyte antigen-DR are expressed on perivascular macrophages.

Go back
201.0, 453.0
30.0, 30.0

p2

p2

cso30:i:CE_DnaRepair

cso30:i:CC_Nucleoplasm

--

G010361

--

true true true true

--

and

mass

coefficient1:0.1
coefficient2:1.0
stoichiometry:c3 : 1

m93337*0.1

nodelay

--

true

0

false

PMID: 12960230, 12163382, 7522384 In our studies, we demonstrated that expression of PNCA correlates well with SIV RNA in the same cell and that the cells that are PCNA-positive are not undergoing significant, detectable cell proliferation but are more likely undergoing DNA repair, a process that might be induced by viral infection.

Go back
324.0, 470.0
23.0, 23.0

p3

p3

cso30:i:ME_GeneExpression

cso30:i:CC_Nucleoplasm

--

true true true true

--

and

mass

coefficient1:0.1
coefficient2:1.0
stoichiometry:c5 : 1
stoichiometry:c4 : 1

m6*0.1

nodelay

--

true

0

false

PMID: 12960230 Our group and others have found similar PCNA expression in the BM of HIVinfected humans and SIV-infected rhesus macaques in monocyte/ macrophage populations that are infected with HIV or SIV. PMID: 12960230, 7522384, 8888951 The frequency of BM macrophages in HIV infected patients significantly increases, as does PCNA expression in these infected cells.

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323.0, 502.0
25.0, 25.0

p4

p4

cso30:i:ME_GeneExpression

cso30:i:CC_Nucleoplasm

--

true true true true

--

and

mass

coefficient1:0.1
coefficient2:1.0
stoichiometry:c7 : 1
stoichiometry:c6 : 1

m12*0.1

nodelay

--

true

0

false

PMID: 12960230, 8145026, 9241535 In vitro, macrophage-CSF and HIV-envelope gp120 mimic this immune activation, resulting in increased CD16 expression on CD14-positive monocytes.

Go back
323.0, 537.0
25.0, 25.0

p5

p5

cso30:i:ME_GeneExpression

cso30:i:CC_Nucleoplasm

--

true true true true

--

and

mass

coefficient1:0.1
coefficient2:1.0
stoichiometry:c9 : 1
stoichiometry:c8 : 1

m89*0.1

nodelay

--

true

0

false

PMID: 12960230, 8145026, 9241535 In vitro, macrophage-CSF and HIV-envelope gp120 mimic this immune activation, resulting in increased CD16 expression on CD14-positive monocytes.

Go back
479.0, 575.0
25.0, 25.0

p6

p6

cso30:i:ME_Translation

cso30:i:CC_Nucleoplasm

--

true true true true

--

and

mass

coefficient1:0.1
coefficient2:1.0
stoichiometry:c11 : 1
stoichiometry:c12 : 1
stoichiometry:c10 : 1

m94268*m6*0.1

nodelay

--

true

0

false

PMID: 12960230, 11704885, 7527738, 9731066 In addition, plasma and CSF levels of soluble CD14 (shed from activated monocytes) increase in HIV-infected patients and even more in patients with AIDS and dementia [45, 78, 87, 88], which indicates immune activation following HIV infection and AIDS and the potential usefulness of soluble CD14 levels to evaluate HIV dementia.

Go back
383.0, 623.0
25.0, 25.0

p7

p7

cso30:i:ME_GeneExpression

cso30:i:CC_Nucleoplasm

--

--

G011389

true true true true

--

and

mass

coefficient1:0.1
coefficient2:1.0
stoichiometry:c13 : 1

1.0*0.1

nodelay

--

true

0

false

PMID: 12960230, 3276004, 8083615, 11596124 In addition to CD14 and CD45 markers used to differentiate between parenchymal microglia and perivascular macrophages, CD16, CD69, and human leukocyte antigen-DR are expressed on perivascular macrophages.

Go back
262.0, 550.0
27.0, 27.0

p8

p8

cso30:i:ME_GeneExpression

cso30:i:CC_Nucleoplasm

--

--

e11

true true true true

--

and

mass

coefficient1:0.1
coefficient2:1.0
stoichiometry:c14 : 1

1.0*0.1

nodelay

--

true

0

false

PMID: 12960230, 3276004, 8083615, 11596124 In addition to CD14 and CD45 markers used to differentiate between parenchymal microglia and perivascular macrophages, CD16, CD69, and human leukocyte antigen-DR are expressed on perivascular macrophages.

Go back
331.0, 627.0
25.0, 25.0

p9

p9

cso30:i:ME_GeneExpression

cso30:i:CC_Nucleolus

--

--

G024648

true true true true

--

and

mass

coefficient1:0.1
coefficient2:1.0
stoichiometry:c15 : 1

1.0*0.1

nodelay

--

true

0

false

PMID: 12960230, 3276004, 8083615, 11596124 In addition to CD14 and CD45 markers used to differentiate between parenchymal microglia and perivascular macrophages, CD16, CD69, and human leukocyte antigen-DR are expressed on perivascular macrophages.

Go back
357.0, 448.0

c1

c1

cso30:c:InputAssociation

--

true true true true

cso30:c:InputAssociation

threshold

--

0

1,

--

Go back
492.0, 600.0

c10

c10

cso30:c:OutputProcess

--

true true true true

cso30:c:OutputProcess

threshold

--

0

1,

--

Go back
409.0, 588.0

c11

c11

cso30:c:InputAssociation

--

true true true true

cso30:c:InputAssociation

threshold

--

0

1,

--

Go back
511.9999981747588, 496.0

c12

c12

cso30:c:InputAssociation

--

true true true true

cso30:c:InputAssociation

threshold

--

0

1,

--

Go back
396.0, 609.0

c13

c13

cso30:c:OutputProcess

--

true true true true

cso30:c:OutputProcess

threshold

--

0

1,

--

Go back
276.0, 533.0

c14

c14

cso30:c:OutputProcess

--

true true true true

cso30:c:OutputProcess

threshold

--

0

1,

--

Go back
298.0, 640.0

c15

c15

cso30:c:OutputProcess

--

true true true true

cso30:c:OutputProcess

threshold

--

0

1,

--

Go back
305.0, 604.0

c16

c16

cso30:c:OutputProcess

--

true true true true

cso30:c:OutputProcess

threshold

--

0

1,

--

Go back
299.0, 684.0

c17

c17

cso30:c:OutputProcess

--

true true true true

cso30:c:OutputProcess

threshold

--

0

1,

--

Go back
302.0, 448.0

c2

c2

cso30:c:OutputProcess

--

true true true true

cso30:c:OutputProcess

threshold

--

0

1,

--

Go back
238.65081256841071, 453.0

c3

c3

cso30:c:InputAssociation

--

true true true true

cso30:c:InputAssociation

threshold

--

0

1,

--

Go back
300.7585526044338, 460.2804166494748

c4

c4

cso30:c:OutputProcess

--

true true true true

cso30:c:OutputProcess

threshold

--

0

1,

--

Go back
354.99974195213207, 482.0642549554388

c5

c5

cso30:c:InputAssociation

--

true true true true

cso30:c:InputAssociation

threshold

--

0

1,

--

Go back
303.0, 515.0

c6

c6

cso30:c:OutputProcess

--

true true true true

cso30:c:OutputProcess

threshold

--

0

1,

--

Go back
355.99995434662895, 515.0270268727927

c7

c7

cso30:c:InputAssociation

--

true true true true

cso30:c:InputAssociation

threshold

--

0

1,

--

Go back
299.9601774867889, 528.9441005758471

c8

c8

cso30:c:OutputProcess

--

true true true true

cso30:c:OutputProcess

threshold

--

0

1,

--

Go back
355.99981739120506, 550.0540528202108

c9

c9

cso30:c:InputAssociation

--

true true true true

cso30:c:InputAssociation

threshold

--

0

1,

--

Go back