1. Information
    majorVersion:3 minorVersion:0 projectID:local projectVersionID:undef fileName:/home/ikeda/eclipse/workspace/macrophage/csml/ok/csml/15069387.csml convertedTime:2009.07.01.10:45

  2. Original Literature
  3. Model OverView
  4. Model Abstracts
  5. Model Detail
  6. Download
Original Literature Model OverView
Publication
Title Innate immunity and toll-like receptors: clinical implications of basic scienceresearch.
Authors Abreu MT, Arditi M.
Affiliation Inflammatory Bowel Disease Center, Division of Gastroenterology, Department ofMedicine, Steven Spielberg Pediatric Research Center, Los Angeles, CA 90048,USA.
Abstract Humans are constantly exposed to a wide variety of microorganisms that can causeinfection. In self-defense, the human host has evolved complex protectivemechanisms, and Toll-like receptors (TLRs) have emerged as a central point indefense. These receptors bind molecular structures that are expressed bymicrobes but are not expressed by the human host, eg, lipopolysaccharides (LPS)or double-stranded RNA (dsRNA). Activation of these receptors initiates aninflammatory cascade that attempts to clear the offending pathogen and set inmotion a specific adaptive immune response. Defects in sensing of pathogens maypredispose the host to recurrent infections. The relative rarity of thesesyndromes of defective innate immunity, however, speaks to the redundancy insensing of pathogens by the innate immune system. More common, polymorphisms inTLR4 are associated with increased predisposition to severe and recurrentinfections but protection against atherosclerotic disease due to diminishedinflammation. Toll-like receptor signaling may also contribute to thepathophysiology of disease and injure the host by activating a deleteriousimmune response such as in sepsis or inflammatory bowel disease (IBD). The focusof this article is to describe the role of TLRs in the innate immune response inhealth and disease.
PMID 15069387
Model Abstract

Entity

G010228:IFN-beta G010262:IL-6 G010329:TNF-alpha G010859:CD86 G012224:CD80 MO000000058:NF-kappaB MO000000213:IRAK MO000000215:IkappaB MO000000289:TNF-alpha MO000002521:CD28 MO000008179:PKR MO000016573:MyD88 MO000016882:LPS MO000017247:IL-10 MO000017269:CD80 MO000017270:CD86 MO000018132:CD14 MO000019394:TLR4 MO000019396:TLR1 MO000019397:TLR2 MO000019398:TLR3 MO000019399:TLR5 MO000019422:TLR6 MO000022131:MD-2 MO000022185:flagellin MO000022224:dsRNA MO000022528:TIRAP MO000041446:dsRNA:TLR3 MO000042012:TLR9 MO000042032:PGN e1: e10: e11:LPS:MD-2:TLR4: MyD88: MAL: TIRAP e12:MAL e13:LPS:MD-2:TLR4: MyD88: MAL: TIRAP: IRAK e14:IkappaB {actiavted} e15:NF-kappaB {activated} e16:NF-kappaB {nucleus} e17:IL-1 e18:IL-8 e19:TLR1: TLR2 e2: e20:TLR6:TLR2 e21:PGN: TLR2 e22:lipopeptide: TLR6:TLR2 e23:lipopeptides: TLR1: TLR2 e24:lipopeptide e25:LPS: TLR2 e26:flagellin: TLR5 e27:dsRNA(h):PKR(h) e28:type I IFN e29:type I IFN e3: e30:RSV F: CD14 e31:RSV F e32:RSV F: CD14: TLR4 e33:CpG DNA e34:CpG DNA: TLR9 e35:Ligand: TLR e36:pneumolysin e37:pneumolysin: TLR4 e38:CD28: CD80: CD86 e39:TGF-beta e4: e40:IL-10 e41:TGF-beta e42:IFN-beta e5:LPS:MD-2 e50: e51: e52: e53: e54: e55: e56: e57: e58: e59: e6:LPS:MD-2:TLR4 e60: e61: e62: e7: e8: e9:

Process

p1 p10 p11 p12 p13 p14 p15 p16 p17 p18 p19 p2 p20 p21 p22 p23 p24 p25 p26 p27 p28 p29 p3 p30 p31 p32 p33 p34 p35 p36 p37 p38 p39 p4 p40 p41 p5 p6 p7 p8 p9
Model Detail
710.0, 1018.0
36.0, 36.0

IFN-beta

--

G010228

cso30:c:mRNA

cso30:i:CC_Nucleoplasm

--

true true true true

csml-variable:Double

m93217

10

false

infinite

0

unit false false false
TRANSFACG010228

--

Go back
630.0, 834.0
35.0, 35.0

IL-6

--

G010262

cso30:c:mRNA

cso30:i:CC_Nucleoplasm

--

p10

--

true true true true

csml-variable:Double

m93248

10

false

infinite

0

unit false false false
TRANSFACG010262

--

Go back
523.0, 811.0
34.5, 34.5

TNF-alpha

--

G010329

cso30:c:mRNA

cso30:i:CC_CellComponent

--

true true true true

csml-variable:Double

m93309

10

false

infinite

0

unit false false false
TRANSFACG010329

--

Go back
677.0, 973.0
38.0, 38.0

CD86

--

G010859

cso30:c:mRNA

cso30:i:CC_CellComponent

--

true true true true

csml-variable:Double

m93745

10

false

infinite

0

unit false false false
TRANSFACG010859

--

Go back
662.0, 910.0
36.0, 36.0

CD80

--

G012224

cso30:c:mRNA

cso30:i:CC_CellComponent

--

true true true true

csml-variable:Double

m95018

10

false

infinite

0

unit false false false
TRANSFACG012224

--

Go back
777.0, 397.0
37.0, 37.0

NF-kappaB

--

MO000000058

cso30:c:Protein

cso30:i:CC_CellComponent

--

--

p6 p21

true true true true

csml-variable:Double

m15

10

false

infinite

0

unit false false false
TRANSPATHMO000000058

--

Go back
908.0, 248.0
40.0, 40.0

IRAK

--

MO000000213

cso30:c:Protein

cso30:i:CC_CellComponent

--

--

p4

true true true true

csml-variable:Double

m184

10

false

infinite

0

unit false false false
InterProIPR000719
TRANSPATHMO000000213

--

Go back
903.0, 363.0
42.0, 42.0

IkappaB

--

MO000000215

cso30:c:Protein

cso30:i:CC_CellComponent

--

--

p5

true true true true

csml-variable:Double

m186

10

false

infinite

0

unit false false false
TRANSPATHMO000000215

--

Go back
297.0, 805.0
38.0, 38.0

TNF-alpha

--

MO000000289

cso30:c:Protein

cso30:i:CC_CellComponent

--

p39

--

true true true true

csml-variable:Double

m230

10

false

infinite

0

unit false false false
InterProIPR003636
TRANSPATHMO000000289

--

Go back
597.0, 1145.0
38.0, 38.0

CD28

--

MO000002521

cso30:c:Protein

cso30:i:CC_CellComponent

--

--

p33

true true true true

csml-variable:Double

m387

10

false

infinite

0

unit false false false
InterProIPR001092
TRANSPATHMO000002521

--

Go back
258.0, 646.0
36.0, 36.0

PKR

--

MO000008179

cso30:c:Protein

cso30:i:CC_CellComponent

--

--

p19

true true true true

csml-variable:Double

m1055

10

false

infinite

0

unit false false false
InterProIPR000719
TRANSPATHMO000008179

--

Go back
785.0, 261.0
37.0, 37.0

MyD88

--

MO000016573

cso30:c:Protein

cso30:i:CC_CellComponent

--

--

p3

true true true true

csml-variable:Double

m1572

10

false

infinite

0

unit false false false
InterProIPR000157
TRANSPATHMO000016573

--

Go back
391.0, 21.0
37.5, 37.5

LPS

--

MO000016882

cso30:c:Protein

cso30:i:CC_CellComponent

--

--

p1 p17

true true true true

csml-variable:Double

m155666

10

false

infinite

0

unit false false false
TRANSPATHMO000016882

--

Go back
913.0, 777.0
38.0, 38.0

IL-10

--

MO000017247

cso30:c:Protein

cso30:i:CC_CellComponent

--

p36

--

true true true true

csml-variable:Double

m2103

10

false

infinite

0

unit false false false
InterProIPR000098
TRANSPATHMO000017247

--

Go back
522.0, 1198.0
44.0, 44.0

CD80

--

MO000017269

cso30:c:Protein

cso30:i:CC_CellComponent

--

true true true true

csml-variable:Double

m2125

10

false

infinite

0

unit false false false
InterProIPR003599
TRANSPATHMO000017269

--

Go back
678.0, 1198.0
44.0, 44.0

CD86

--

MO000017270

cso30:c:Protein

cso30:i:CC_CellComponent

--

true true true true

csml-variable:Double

m2126

10

false

infinite

0

unit false false false
InterProIPR003596
TRANSPATHMO000017270

--

Go back
453.0, 57.0
30.0, 30.0

CD14

--

MO000018132

cso30:c:Protein

cso30:i:CC_CellComponent

--

--

p24

true true true true

csml-variable:Double

m2828

10

false

infinite

0

unit false false false
InterProIPR001611
TRANSPATHMO000018132

--

Go back
612.0, 160.0
40.0, 40.0

TLR4

--

MO000019394

cso30:c:Protein

cso30:i:CC_CellComponent

--

--

p2 p25 p32

true true true true

csml-variable:Double

m3961

10

false

infinite

0

unit false false false
InterProIPR000157
TRANSPATHMO000019394

--

Go back
269.0, 193.0
30.5, 30.5

TLR1

--

MO000019396

cso30:c:Protein

cso30:i:CC_CellComponent

--

--

p12

true true true true

csml-variable:Double

m3963

10

false

infinite

0

unit false false false
InterProIPR003016
TRANSPATHMO000019396

--

Go back
195.0, 183.0
34.0, 34.0

TLR2

--

MO000019397

cso30:c:Protein

cso30:i:CC_CellComponent

--

--

p12 p13 p14 p17

true true true true

csml-variable:Double

m3964

10

false

infinite

0

unit false false false
InterProIPR000157
TRANSPATHMO000019397

--

Go back
188.0, 772.0
40.0, 40.0

TLR3

--

MO000019398

cso30:c:Protein

cso30:i:CC_CellComponent

--

--

p20

true true true true

csml-variable:Double

m3965

10

false

infinite

0

unit false false false
InterProIPR000157
TRANSPATHMO000019398

--

Go back
183.0, 515.0
34.0, 34.0

TLR5

--

MO000019399

cso30:c:Protein

cso30:i:CC_CellComponent

--

--

p18

true true true true

csml-variable:Double

m3966

10

false

infinite

0

unit false false false
InterProIPR000157
TRANSPATHMO000019399

--

Go back
181.0, 319.0
34.5, 34.5

TLR6

--

MO000019422

cso30:c:Protein

cso30:i:CC_CellComponent

--

--

p13

true true true true

csml-variable:Double

m3987

10

false

infinite

0

unit false false false
InterProIPR000157
TRANSPATHMO000019422

--

Go back
669.0, 173.0
38.0, 38.0

MD-2

--

MO000022131

cso30:c:Protein

cso30:i:CC_CellComponent

--

--

p1

true true true true

csml-variable:Double

m6438

10

false

infinite

0

unit false false false
InterProIPR003172
TRANSPATHMO000022131

--

Go back
53.0, 513.0
38.0, 38.0

flagellin

--

MO000022185

cso30:c:Protein

cso30:i:CC_CellComponent

--

--

p18

true true true true

csml-variable:Double

m6485

10

false

infinite

0

unit false false false
TRANSPATHMO000022185

--

Go back
47.0, 759.0
42.0, 42.0

dsRNA

--

MO000022224

cso30:c:Protein

cso30:i:CC_CellComponent

--

--

p19 p20

true true true true

csml-variable:Double

m119368

10

false

infinite

0

unit false false false
TRANSPATHMO000022224

--

Go back
860.0, 264.0
39.0, 39.0

TIRAP

--

MO000022528

cso30:c:Protein

cso30:i:CC_CellComponent

--

--

p3

true true true true

csml-variable:Double

m6810

10

false

infinite

0

unit false false false
InterProIPR000157
TRANSPATHMO000022528

--

Go back
179.0, 835.0
42.0, 42.0

dsRNA:TLR3

--

MO000041446

cso30:c:Protein

cso30:i:CC_CellComponent

--

true true true true

csml-variable:Double

m19314

10

false

infinite

0

unit false false false
TRANSPATHMO000041446

--

Go back
190.0, 898.0
35.0, 35.0

TLR9

--

MO000042012

cso30:c:Protein

cso30:i:CC_CellComponent

--

--

p26

true true true true

csml-variable:Double

m19828

10

false

infinite

0

unit false false false
TRANSPATHMO000042012

--

Go back
119.0, 145.0
29.0, 29.0

PGN

--

MO000042032

cso30:c:Protein

cso30:i:CC_CellComponent

--

--

p14

true true true true

csml-variable:Double

m155701

10

false

infinite

0

unit false false false
TRANSPATHMO000042032

--

Go back
170.75, 171.9969080091176
856.2594311764528, 1243.2886940682085

--

e1

cso30:c:EntityBiologicalCompartment

cso30:i:CC_PlasmaMembrane

--

--

--

true true true true

csml-variable:Double

m1

0

false

infinite

0

unit false true false

--

Go back
179.0, 191.0
829.9775981223105, 1167.545103664102

--

e10

cso30:c:EntityBiologicalCompartment

cso30:i:CC_Cytosol

--

--

--

true true true true

csml-variable:Double

m10

0

false

infinite

0

unit false true false

--

Go back
887.5, 113.0
48.39289629467222, 93.66367024775268

LPS:MD-2:TLR4: MyD88: MAL: TIRAP

--

e11

cso30:c:Complex

cso30:i:CC_PlasmaMembrane_IntegralToPlasmaMembrane_

--

p3

p4

true true true true

csml-variable:Double

m11

0

false

infinite

0

unit false false false

--

Go back
839.0, 307.0
18.60617399438728, 42.93732460243218

MAL

--

e12

cso30:c:Protein

cso30:i:CC_Cytosol

--

--

p3

true true true true

csml-variable:Double

m12

0

false

infinite

0

unit false false false

--

Go back
963.5, 221.0
48.55601841701382, 93.97939048454286

LPS:MD-2:TLR4: MyD88: MAL: TIRAP: IRAK

--

e13

cso30:c:Complex

cso30:i:CC_PlasmaMembrane_IntegralToPlasmaMembrane_

--

p4

p5

true true true true

csml-variable:Double

m13

0

false

infinite

0

unit false false false

--

Go back
911.0, 443.0
42.0, 42.0

IkappaB {actiavted}

--

e14

cso30:c:Protein

cso30:i:CC_CellComponent

--

p5

p6

true true true true

csml-variable:Double

m14

10

false

infinite

0

unit false false false
TRANSPATHMO000000215

--

Go back
782.0, 538.0
36.0, 36.0

NF-kappaB {activated}

--

e15

cso30:c:Protein

cso30:i:CC_CellComponent

--

true true true true

csml-variable:Double

m16

10

false

infinite

0

unit false false false
TRANSPATHMO000000058

--

Go back
601.0, 717.0
37.0, 37.0

NF-kappaB {nucleus}

--

e16

cso30:c:Protein

cso30:i:CC_CellComponent

--

true true true true

csml-variable:Double

m17

10

false

infinite

0

unit false false false
TRANSPATHMO000000058

--

Go back
577.0, 885.0
38.0, 38.0

IL-1

--

e17

cso30:c:mRNA

cso30:i:CC_Nucleoplasm

--

p9 p31

--

true true true true

csml-variable:Double

m18

10

false

infinite

0

unit false false false
Affymetrix1520_s_at
EnsemblENSG00000125538
HGNCIL1B
OMIM137215
ProteomeHumanPSD/IL1B
RefSeqNM_000576
TRANSFACG000311
UnigeneHs.126256

--

Go back
668.0, 827.0
47.64705882352941, 25.41176470588235

IL-8

--

e18

cso30:c:mRNA

cso30:i:CC_Nucleoplasm

--

p11

--

true true true true

csml-variable:Double

m19

0

false

infinite

0

unit false false false

--

Go back
326.5, 173.0
35.481546572934974, 54.58699472759226

TLR1: TLR2

--

e19

cso30:c:Protein

cso30:i:CC_PlasmaMembrane_IntegralToPlasmaMembrane_

--

true true true true

csml-variable:Double

m20

0

false

infinite

0

unit false false false

--

Go back
170.75, 171.9969080091176
856.2594311764528, 1243.2886940682085

--

e2

cso30:c:EntityBiologicalCompartment

cso30:i:CC_PlasmaMembrane_ExternalSideOfPlasmaMembrane_

--

--

--

true true true true

csml-variable:Double

m2

0

false

infinite

0

unit false true false

--

Go back
186.5, 376.0
31.688927943760977, 48.75219683655537

TLR6:TLR2

--

e20

cso30:c:Protein

cso30:i:CC_PlasmaMembrane_IntegralToPlasmaMembrane_

--

true true true true

csml-variable:Double

m21

0

false

infinite

0

unit false false false

--

Go back
174.0, 263.5
55.13382974441538, 33.99919500905616

PGN: TLR2

--

e21

cso30:c:Protein

cso30:i:CC_PlasmaMembrane_IntegralToPlasmaMembrane_

--

p14

--

true true true true

csml-variable:Double

m22

0

false

infinite

0

unit false false false

--

Go back
171.0, 455.5
65.01106862547796, 40.090158985711426

lipopeptide: TLR6:TLR2

--

e22

cso30:c:Protein

cso30:i:CC_PlasmaMembrane_IntegralToPlasmaMembrane_

--

p16

--

true true true true

csml-variable:Double

m23

0

false

infinite

0

unit false false false

--

Go back
379.5, 162.0
32.65888508754276, 52.960354196015295

lipopeptides: TLR1: TLR2

--

e23

cso30:c:Protein

cso30:i:CC_PlasmaMembrane_IntegralToPlasmaMembrane_

--

p15

--

true true true true

csml-variable:Double

m24

0

false

infinite

0

unit false false false

--

Go back
90.0, 86.5
36.32, 27.24

lipopeptide

--

e24

cso30:c:Protein

cso30:i:CC_Extracellular

--

--

p15 p16

true true true true

csml-variable:Double

m25

0

false

infinite

0

unit false false false

--

Go back
462.5, 167.0
35.36184342926143, 57.34352988528878

LPS: TLR2

--

e25

cso30:c:Protein

cso30:i:CC_PlasmaMembrane_IntegralToPlasmaMembrane_

--

true true true true

csml-variable:Double

m26

0

false

infinite

0

unit false false false

--

Go back
167.0, 571.5
65.880458844838, 40.626282954316764

flagellin: TLR5

--

e26

cso30:c:Protein

cso30:i:CC_Cytosol

--

p18

--

true true true true

csml-variable:Double

m27

0

false

infinite

0

unit false false false

--

Go back
255.0, 699.0
42.0, 42.0

dsRNA(h):PKR(h)

--

e27

cso30:c:Protein

cso30:i:CC_CellComponent

--

p19

--

true true true true

csml-variable:Double

m28

10

false

infinite

0

unit false false false
TRANSPATHMO000022613

--

Go back
452.0, 896.0
40.0, 40.0

type I IFN

--

e28

cso30:c:mRNA

cso30:i:CC_Nucleoplasm

--

true true true true

csml-variable:Double

m29

10

false

infinite

0

unit false false false
TRANSFACG010228

--

Go back
268.0, 901.5
47.333467498490634, 29.188971624069225

type I IFN

--

e29

cso30:c:Protein

cso30:i:CC_Cytosol

--

p23

--

true true true true

csml-variable:Double

m30

0

false

infinite

0

unit false false false

--

Go back
187.87518862352903, 189.12209663264667
822.0090539293948, 1209.0383168211513

--

e3

cso30:c:EntityBiologicalCompartment

cso30:i:CC_PlasmaMembrane_IntegralToPlasmaMembrane_

--

--

--

true true true true

csml-variable:Double

m3

0

false

infinite

0

unit false true false

--

Go back
511.5, 100.0
32.80819863356108, 40.17330444925846

RSV F: CD14

--

e30

cso30:c:Complex

cso30:i:CC_Cytosol

--

true true true true

csml-variable:Double

m31

0

false

infinite

0

unit false false false

--

Go back
587.0, 59.5
33.92000000000001, 25.44

RSV F

--

e31

cso30:c:Protein

cso30:i:CC_Extracellular

--

--

p24

true true true true

csml-variable:Double

m32

0

false

infinite

0

unit false false false

--

Go back
530.5, 149.0
43.414930844859185, 53.16113981003164

RSV F: CD14: TLR4

--

e32

cso30:c:Complex

cso30:i:CC_PlasmaMembrane_InternalSideOfPlasmaMembrane_

--

p25

--

true true true true

csml-variable:Double

m33

0

false

infinite

0

unit false false false

--

Go back
86.0, 901.5
60.0, 21.0

CpG DNA

--

e33

cso30:c:Dna

cso30:i:CC_Extracellular

--

--

p26

true true true true

csml-variable:Double

m34

0

false

infinite

0

unit false false false

--

Go back
161.0, 972.5
77.55685248540955, 47.826725699335896

CpG DNA: TLR9

--

e34

cso30:c:Protein

cso30:i:CC_Cytosol

--

true true true true

csml-variable:Double

m35

0

false

infinite

0

unit false false false

--

Go back
980.5, 902.0
31.0, 60.0

Ligand: TLR

--

e35

cso30:c:Complex

cso30:i:CC_PlasmaMembrane_IntegralToPlasmaMembrane_

--

true true true true

csml-variable:Double

m36

0

false

infinite

0

unit false false false

--

Go back
1049.0, 620.5
46.85413005272408, 30.455184534270654

pneumolysin

--

e36

cso30:c:Protein

cso30:i:CC_Extracellular

--

--

p32

true true true true

csml-variable:Double

m37

0

false

infinite

0

unit false false false

--

Go back
968.0, 532.5
63.51378546991346, 39.16683437311331

pneumolysin: TLR4

--

e37

cso30:c:Protein

cso30:i:CC_PlasmaMembrane_ExternalSideOfPlasmaMembrane_

--

p32

--

true true true true

csml-variable:Double

m38

0

false

infinite

0

unit false false false

--

Go back
598.5, 1270.0
43.0, 60.0

CD28: CD80: CD86

--

e38

cso30:c:Complex

cso30:i:CC_Cytosol

--

p33

--

true true true true

csml-variable:Double

m39

0

false

infinite

0

unit false false false

--

Go back
693.0, 876.0
45.88235294117647, 24.470588235294116

TGF-beta

--

e39

cso30:c:mRNA

cso30:i:CC_Nucleoplasm

--

true true true true

csml-variable:Double

m40

0

false

infinite

0

unit false false false

--

Go back
219.55678757705792, 219.09117672382234
758.6458560223374, 1149.1001566387988

--

e4

cso30:c:EntityBiologicalCompartment

cso30:i:CC_PlasmaMembrane_InternalSideOfPlasmaMembrane_

--

--

--

true true true true

csml-variable:Double

m4

0

false

infinite

0

unit false true false

--

Go back
782.0, 774.0
36.5, 36.5

IL-10

--

e40

cso30:c:mRNA

cso30:i:CC_Nucleoplasm

--

true true true true

csml-variable:Double

m41

10

false

infinite

0

unit false false false
TRANSFACG010254

--

Go back
903.0, 722.5
42.28617428053935, 26.076474139665926

TGF-beta

--

e41

cso30:c:Protein

cso30:i:CC_Cytosol

--

p37

--

true true true true

csml-variable:Double

m42

0

false

infinite

0

unit false false false

--

Go back
834.0, 1094.5
44.01287985510163, 27.14127591064601

IFN-beta

--

e42

cso30:c:Protein

cso30:i:CC_Cytosol

--

p41

--

true true true true

csml-variable:Double

m43

0

false

infinite

0

unit false false false

--

Go back
725.5, 161.0
36.98066988835194, 45.28245292451258

LPS:MD-2

--

e5

cso30:c:Complex

cso30:i:CC_Extracellular

--

p1

p2

true true true true

csml-variable:Double

m5

0

false

infinite

0

unit false false false

--

Go back
397.0, 693.0
465.6500709748862, 422.29345356567933

--

e50

cso30:c:EntityBiologicalCompartment

cso30:i:CC_NuclearEnvelopeLumen

--

--

--

true true true true

csml-variable:Double

m50

0

false

infinite

0

unit false true false

--

Go back
447.29367619468036, 703.0077409313898
272.27955732982184, 409.2864683429171

--

e51

cso30:c:EntityBiologicalCompartment

cso30:i:CC_NuclearPore

--

--

--

true true true true

csml-variable:Double

m51

0

false

infinite

0

unit false true false

--

Go back
403.06992643728904, 698.6363602631969
453.51021810030846, 411.0207330392853

--

e52

cso30:c:EntityBiologicalCompartment

cso30:i:CC_NuclearInnerMembrane

--

--

--

true true true true

csml-variable:Double

m52

0

false

infinite

0

unit false true false

--

Go back
403.93705878547314, 699.503492611381
451.7759534039399, 409.2864683429171

--

e53

cso30:c:EntityBiologicalCompartment

cso30:i:CC_NuclearLumen

--

--

--

true true true true

csml-variable:Double

m53

0

false

infinite

0

unit false true false

--

Go back
397.0, 693.0
465.6500709748862, 422.29345356567933

--

e54

cso30:c:EntityBiologicalCompartment

cso30:i:CC_NuclearOuterMembrane

--

--

--

true true true true

csml-variable:Double

m54

0

false

infinite

0

unit false true false

--

Go back
397.0, 693.0
465.6500709748862, 422.29345356567933

--

e55

cso30:c:EntityBiologicalCompartment

cso30:i:CC_Nucleus

--

--

--

true true true true

csml-variable:Double

m55

0

false

infinite

0

unit false true false

--

Go back
403.93705878547314, 699.503492611381
451.7759534039399, 409.2864683429171

--

e56

cso30:c:EntityBiologicalCompartment

cso30:i:CC_Nucleoplasm

--

--

--

true true true true

csml-variable:Double

m56

0

false

infinite

0

unit false true false

--

Go back
736.9158804881849, 866.4264696368291
29.091257918298922, 26.33524401024959

--

e57

cso30:c:EntityBiologicalCompartment

cso30:i:CC_NuclearBody

--

--

--

true true true true

csml-variable:Double

m57

0

false

infinite

0

unit false true false

--

Go back
660.6082338479803, 987.8249983826097
82.37757307749382, 74.57338194383664

--

e58

cso30:c:EntityBiologicalCompartment

cso30:i:CC_Nucleolus

--

--

--

true true true true

csml-variable:Double

m58

0

false

infinite

0

unit false true false

--

Go back
397.0, 693.0
465.6500709748862, 422.29345356567933

--

e59

cso30:c:EntityBiologicalCompartment

cso30:i:CC_NuclearEnvelope

--

--

--

true true true true

csml-variable:Double

m59

0

false

infinite

0

unit false true false

--

Go back
773.5, 153.0
36.24029818022364, 70.14251260688447

LPS:MD-2:TLR4

--

e6

cso30:c:Complex

cso30:i:CC_PlasmaMembrane_IntegralToPlasmaMembrane_

--

p2

p3

true true true true

csml-variable:Double

m6

0

false

infinite

0

unit false false false

--

Go back
506.7511016961721, 880.6637213250547
14.746453546866459, 7.100144300343119

--

e60

cso30:c:EntityBiologicalCompartment

cso30:i:CC_Chromatin

--

--

--

true true true true

csml-variable:Double

m60

0

false

infinite

0

unit false true false

--

Go back
506.2586758712023, 859.4894108513561
50.4736470593979, 90.85256470691624

--

e61

cso30:c:EntityBiologicalCompartment

cso30:i:CC_NuclearChromosome

--

--

--

true true true true

csml-variable:Double

m61

0

false

infinite

0

unit false true false

--

Go back
527.4329863449013, 918.5805098477247
7.878813199515761, 7.8788131995157675

--

e62

cso30:c:EntityBiologicalCompartment

cso30:i:CC_NuclearCentromere

--

--

--

true true true true

csml-variable:Double

m62

0

false

infinite

0

unit false true false

--

Go back
182.0, 177.0
839.7237354966342, 1189.8668429177399

--

e7

cso30:c:EntityBiologicalCompartment

cso30:i:CC_Cell

--

--

--

true true true true

csml-variable:Double

m7

0

false

infinite

0

unit false true false

--

Go back
185.0, 198.0
805.5569854171277, 1169.6687428256696

--

e8

cso30:c:EntityBiologicalCompartment

cso30:i:CC_Cell_WithoutCellWall_

--

--

--

true true true true

csml-variable:Double

m8

0

false

infinite

0

unit false true false

--

Go back
193.0, 219.0
801.8791759029863, 1154.3288303559784

--

e9

cso30:c:EntityBiologicalCompartment

cso30:i:CC_Cytoplasm

--

--

--

true true true true

csml-variable:Double

m9

0

false

infinite

0

unit false true false

--

Go back
673.0, 25.0
30.0, 30.0

p1

p1

cso30:i:ME_Binding

cso30:i:CC_Extracellular

--

true true true true

--

and

mass

coefficient1:0.1
coefficient2:1.0
stoichiometry:c1 : 1
stoichiometry:c2 : 1
stoichiometry:c3 : 1

m155666*m6438*0.1

nodelay

--

true

0

false

PMID: 15069387, 11593030, 11500507 MD-2 is a secreted protein that may function by binding to LPS and to the extracellular domain of TLR4, where it facilitates LPS responsiveness.

Go back
633.0, 773.0
30.0, 30.0

p10

p10

cso30:i:ME_GeneExpression

cso30:i:CC_Nucleoplasm

--

true true true true

--

and

mass

coefficient1:0.1
coefficient2:1.0
stoichiometry:c27 : 1
stoichiometry:c28 : 1

m17*0.1

nodelay

--

true

0

false

PMID: 15069387, 9237759 Interaction of LPS with its receptor TLR4 triggers a complex signaling pathway that leads to the activation of transcription actors, such as nuclear factor- jB (NF-jB), which then induce the activation of the inflammatory genes, such as tumor necrosis factor (TNF)-a, interleukin (IL)-1, IL-6, and IL-8.

Go back
677.0, 761.0
30.0, 30.0

p11

p11

cso30:i:ME_GeneExpression

cso30:i:CC_Nucleoplasm

--

true true true true

--

and

mass

coefficient1:0.1
coefficient2:1.0
stoichiometry:c29 : 1
stoichiometry:c30 : 1

m17*0.1

nodelay

--

true

0

false

PMID: 15069387, 9237759 Interaction of LPS with its receptor TLR4 triggers a complex signaling pathway that leads to the activation of transcription actors, such as nuclear factor- jB (NF-jB), which then induce the activation of the inflammatory genes, such as tumor necrosis factor (TNF)-a, interleukin (IL)-1, IL-6, and IL-8.

Go back
329.0, 249.0
30.0, 30.0

p12

p12

cso30:i:ME_Binding

cso30:i:CC_Cytosol

--

true true true true

--

and

mass

coefficient1:0.1
coefficient2:1.0
stoichiometry:c31 : 1
stoichiometry:c32 : 1
stoichiometry:c33 : 1

m3964*m3963*0.1

nodelay

--

true

0

false

PMID: 15069387 Toll-like receptor 2, in combination with TLR6 or TLR1, mediates responses to multiple other microbial pathogens.

Go back
255.0, 321.0
30.0, 30.0

p13

p13

cso30:i:ME_Binding

cso30:i:CC_Cytosol

--

true true true true

--

and

mass

coefficient1:0.1
coefficient2:1.0
stoichiometry:c34 : 1
stoichiometry:c35 : 1
stoichiometry:c36 : 1

m3987*m3964*0.1

nodelay

--

true

0

false

PMID: 15069387 Toll-like receptor 2, in combination with TLR6 or TLR1, mediates responses to multiple other microbial pathogens.

Go back
119.0, 205.0
30.0, 30.0

p14

p14

cso30:i:ME_Binding

cso30:i:CC_Extracellular

--

true true true true

--

and

mass

coefficient1:0.1
coefficient2:1.0
stoichiometry:c37 : 1
stoichiometry:c38 : 1
stoichiometry:c39 : 1

m3964*m155701*0.1

nodelay

--

true

0

false

PMID: 15069387, 10384090 Pathogen-associated molecular patterns of gram-positive organisms, such as peptidoglycan and lipopeptides, are recognized by TLR2.

Go back
329.0, 85.0
30.0, 30.0

p15

p15

cso30:i:ME_Binding

cso30:i:CC_Extracellular

--

true true true true

--

and

mass

coefficient1:0.1
coefficient2:1.0
stoichiometry:c40 : 1
stoichiometry:c43 : 1
stoichiometry:c44 : 1

m25*m20*0.1

nodelay

--

true

0

false

PMID: 15069387, 10384090 Pathogen-associated molecular patterns of gram-positive organisms, such as peptidoglycan and lipopeptides, are recognized by TLR2.

Go back
93.0, 385.0
30.0, 30.0

p16

p16

cso30:i:ME_Binding

cso30:i:CC_Extracellular

--

true true true true

--

and

mass

coefficient1:0.1
coefficient2:1.0
stoichiometry:c41 : 1
stoichiometry:c42 : 1
stoichiometry:c45 : 1

m25*m21*0.1

nodelay

--

true

0

false

PMID: 15069387, 10384090 Pathogen-associated molecular patterns of gram-positive organisms, such as peptidoglycan and lipopeptides, are recognized by TLR2.

Go back
397.0, 89.0
30.0, 30.0

p17

p17

cso30:i:ME_Binding

cso30:i:CC_Extracellular

--

true true true true

--

and

mass

coefficient1:0.1
coefficient2:1.0
stoichiometry:c46 : 1
stoichiometry:c47 : 1
stoichiometry:c48 : 1

m155666*m3964*0.1

nodelay

--

true

0

false

PMID: 15069387, 10816537 LPS from Leptospira interogans30 and Porphyromonas gingivalis (periodontal disease) activates macrophages through TLR2.

Go back
113.0, 521.0
30.0, 30.0

p18

p18

cso30:i:ME_Binding

cso30:i:CC_Extracellular

--

true true true true

--

and

mass

coefficient1:0.1
coefficient2:1.0
stoichiometry:c49 : 1
stoichiometry:c50 : 1
stoichiometry:c51 : 1

m6485*m3966*0.1

nodelay

--

true

0

false

PMID: 15069387, 11323673 Toll-like receptor 5 has been found to be the receptor for monomeric flagellin.

Go back
105.0, 705.0
30.0, 30.0

p19

p19

cso30:i:ME_Binding

cso30:i:CC_Extracellular

--

true true true true

--

and

mass

coefficient1:0.1
coefficient2:1.0
stoichiometry:c52 : 1
stoichiometry:c53 : 1
stoichiometry:c54 : 1

m1055*m119368*0.1

nodelay

--

true

0

false

PMID: 15069387, 7568028 dsRNA is known to bind only intracellular targets, including the dsRNA-dependent protein kinase (PKR).

Go back
729.0, 53.0
30.0, 30.0

p2

p2

cso30:i:ME_Binding

cso30:i:CC_Extracellular

--

true true true true

--

and

mass

coefficient1:0.1
coefficient2:1.0
stoichiometry:c4 : 1
stoichiometry:c5 : 1
stoichiometry:c6 : 1

m5*m3961*0.1

nodelay

--

true

0

false

PMID: 15069387, 11593030, 11500507 MD-2 is a secreted protein that may function by binding to LPS and to the extracellular domain of TLR4, where it facilitates LPS responsiveness.

Go back
109.0, 841.0
30.0, 30.0

p20

p20

cso30:i:ME_Binding

cso30:i:CC_Extracellular

--

true true true true

--

and

mass

coefficient1:0.1
coefficient2:1.0
stoichiometry:c55 : 1
stoichiometry:c56 : 1
stoichiometry:c57 : 1

m119368*m3965*0.1

nodelay

--

true

0

false

PMID: 15069387, 11607032, 12646618 Studies have shown that mammalian TLR3 recognizes dsRNA, and that activation of the receptor induces NF-kappaB and the production of type I IFNs.

Go back
753.0, 469.0
30.0, 30.0

p21

p21

cso30:i:ME_UnknownActivation

cso30:i:CC_Cytosol

--

true true true true

--

and

mass

coefficient1:0.1
coefficient2:1.0
stoichiometry:c58 : 1
stoichiometry:c60 : 1
stoichiometry:c59 : 1

m15*m19314*0.1

nodelay

--

true

0

false

PMID: 15069387, 11607032, 12646618 Studies have shown that mammalian TLR3 recognizes dsRNA, and that activation of the receptor induces NF-kappaB and the production of type I IFNs.

Go back
457.0, 841.0
30.0, 30.0

p22

p22

cso30:i:ME_GeneExpression

cso30:i:CC_Nucleoplasm

--

true true true true

--

and

mass

coefficient1:0.1
coefficient2:1.0
stoichiometry:c61 : 1
stoichiometry:c62 : 1

m19314*0.1

nodelay

--

true

0

false

PMID: 15069387, 11607032, 12646618 Studies have shown that mammalian TLR3 recognizes dsRNA, and that activation of the receptor induces NF-kappaB and the production of type I IFNs.

Go back
341.0, 901.0
30.0, 30.0

p23

p23

cso30:i:ME_Translation

cso30:i:CC_Cytosol

--

true true true true

--

and

mass

coefficient1:0.1
coefficient2:1.0
stoichiometry:c63 : 1
stoichiometry:c64 : 1

m29*0.1

nodelay

--

true

0

false

PMID: 15069387, 11607032, 12646618 Studies have shown that mammalian TLR3 recognizes dsRNA, and that activation of the receptor induces NF-kappaB and the production of type I IFNs.

Go back
513.0, 57.0
30.0, 30.0

p24

p24

cso30:i:ME_Binding

cso30:i:CC_PlasmaMembrane_IntegralToPlasmaMembrane_

--

true true true true

--

and

mass

coefficient1:0.1
coefficient2:1.0
stoichiometry:c65 : 1
stoichiometry:c66 : 1
stoichiometry:c67 : 1

m2828*m32*0.1

nodelay

--

true

0

false

PMID: 15069387, 11062499 The innate immune response to fusion protein F of respiratory syncytial virus (RSV) is mediated by TLR4 and CD14.

Go back
617.0, 105.0
30.0, 30.0

p25

p25

cso30:i:ME_Binding

cso30:i:CC_Extracellular

--

true true true true

--

and

mass

coefficient1:0.1
coefficient2:1.0
stoichiometry:c68 : 1
stoichiometry:c69 : 1
stoichiometry:c70 : 1

m3961*m31*0.1

nodelay

--

true

0

false

PMID: 15069387, 11062499 The innate immune response to fusion protein F of respiratory syncytial virus (RSV) is mediated by TLR4 and CD14.

Go back
101.0, 981.0
30.0, 30.0

p26

p26

cso30:i:ME_Binding

cso30:i:CC_Extracellular

--

true true true true

--

and

mass

coefficient1:0.1
coefficient2:1.0
stoichiometry:c71 : 1
stoichiometry:c75 : 1
stoichiometry:c73 : 1

m34*m19828*0.1

nodelay

--

true

0

false

PMID: 15069387, 11470918 Toll-like receptor 9 has been shown to be the receptor for CpG DNA.

Go back
765.0, 913.0
30.0, 30.0

p27

p27

cso30:i:ME_GeneExpression

cso30:i:CC_Nucleoplasm

--

true true true true

--

and

mass

coefficient1:0.1
coefficient2:1.0
stoichiometry:c72 : 1
stoichiometry:c76 : 1

m36*0.1

nodelay

--

true

0

false

PMID: 15069387, 9237759 Pathogen-associated molecular pattern recognition by TLRs in macrophages and antigen-presenting cells also leads to the expression of costimulatory molecules such as CD80 (B7.1) and CD86 (B7.2), which bind to CD28 on T lymphocytes to assist in antigen presentation.

Go back
757.0, 953.0
30.0, 30.0

p28

p28

cso30:i:ME_GeneExpression

cso30:i:CC_Nucleoplasm

--

true true true true

--

and

mass

coefficient1:0.1
coefficient2:1.0
stoichiometry:c74 : 1
stoichiometry:c77 : 1

m36*0.1

nodelay

--

true

0

false

PMID: 15069387, 9237759 Pathogen-associated molecular pattern recognition by TLRs in macrophages and antigen-presenting cells also leads to the expression of costimulatory molecules such as CD80 (B7.1) and CD86 (B7.2), which bind to CD28 on T lymphocytes to assist in antigen presentation.

Go back
525.0, 1141.0
30.0, 30.0

p29

p29

cso30:i:ME_Translation

cso30:i:CC_Cytosol

--

true true true true

--

and

mass

coefficient1:0.1
coefficient2:1.0
stoichiometry:c78 : 1
stoichiometry:c80 : 1

m95018*0.1

nodelay

--

true

0

false

PMID: 15069387, 9237759 Pathogen-associated molecular pattern recognition by TLRs in macrophages and antigen-presenting cells also leads to the expression of costimulatory molecules such as CD80 (B7.1) and CD86 (B7.2), which bind to CD28 on T lymphocytes to assist in antigen presentation.

Go back
833.0, 45.0
30.0, 30.0

p3

p3

cso30:i:ME_Binding

cso30:i:CC_Extracellular

--

true true true true

--

and

mass

coefficient1:0.1
coefficient2:1.0
stoichiometry:c7 : 1
stoichiometry:c8 : 1
stoichiometry:c9 : 1
stoichiometry:c11 : 1
stoichiometry:c10 : 1

m6*m1572*m12*m6810*0.1

nodelay

--

true

0

false

PMID: 15069387 The adapter proteins MyD88 and TIRAP/MAL associate via TIRmediated interactions with the TLR, and initiate the formation of a signaling complex involving interleukinreceptor?associated kinases (IRAKs).

Go back
685.0, 1145.0
30.0, 30.0

p30

p30

cso30:i:ME_Translation

cso30:i:CC_Cytosol

--

true true true true

--

and

mass

coefficient1:0.1
coefficient2:1.0
stoichiometry:c79 : 1
stoichiometry:c81 : 1

m93745*0.1

nodelay

--

true

0

false

PMID: 15069387, 9237759 Pathogen-associated molecular pattern recognition by TLRs in macrophages and antigen-presenting cells also leads to the expression of costimulatory molecules such as CD80 (B7.1) and CD86 (B7.2), which bind to CD28 on T lymphocytes to assist in antigen presentation.

Go back
581.0, 981.0
30.0, 30.0

p31

p31

cso30:i:ME_GeneExpression

cso30:i:CC_Nucleoplasm

--

true true true true

--

and

mass

coefficient1:0.1
coefficient2:1.0
stoichiometry:c83 : 1
stoichiometry:c82 : 1

m35*0.1

nodelay

--

true

0

false

PMID: 15069387 LPS- or CpGactivated dendritic cells produce IL-6.

Go back
1057.0, 533.0
30.0, 30.0

p32

p32

cso30:i:ME_Binding

cso30:i:CC_Extracellular

--

true true true true

--

and

mass

coefficient1:0.1
coefficient2:1.0
stoichiometry:c84 : 1
stoichiometry:c85 : 1
stoichiometry:c86 : 1

m3961*m37*0.1

nodelay

--

true

0

false

PMID: 15069387, 12569171 a recent study found that pneumolysin, a pneumococcal virulence factor, is recognized by TLR4 and that this recognition confers resistance to pneumococcal infection.

Go back
605.0, 1205.0
30.0, 30.0

p33

p33

cso30:i:ME_Binding

cso30:i:CC_Cytosol

--

true true true true

--

and

mass

coefficient1:0.1
coefficient2:1.0
stoichiometry:c87 : 1
stoichiometry:c88 : 1
stoichiometry:c89 : 1
stoichiometry:c90 : 1

m2126*m387*m2125*0.1

nodelay

--

true

0

false

PMID: 15069387, 9237759 Pathogen-associated molecular pattern recognition by TLRs in macrophages and antigen-presenting cells also leads to the expression of costimulatory molecules such as CD80 (B7.1) and CD86 (B7.2), which bind to CD28 on T lymphocytes to assist in antigen presentation.

Go back
769.0, 873.0
30.0, 30.0

p34

p34

cso30:i:ME_GeneExpression

cso30:i:CC_Nucleoplasm

--

true true true true

--

and

mass

coefficient1:0.1
coefficient2:1.0
stoichiometry:c91 : 1
stoichiometry:c92 : 1

m36*0.1

nodelay

--

true

0

false

PMID: 15069387 Dendritic cell production of IL-12 shifts Th0 development towards Th1 differentiation.

Go back
769.0, 833.0
30.0, 30.0

p35

p35

cso30:i:ME_GeneExpression

cso30:i:CC_Nucleoplasm

--

true true true true

--

and

mass

coefficient1:0.1
coefficient2:1.0
stoichiometry:c93 : 1
stoichiometry:c94 : 1

m36*0.1

nodelay

--

true

0

false

PMID: 15069387 Dendritic cell production of IL-12 shifts Th0 development towards Th1 differentiation.

Go back
861.0, 781.0
30.0, 30.0

p36

p36

cso30:i:ME_Translation

cso30:i:CC_Cytosol

--

true true true true

--

and

mass

coefficient1:0.1
coefficient2:1.0
stoichiometry:c95 : 1
stoichiometry:c98 : 1

m41*0.1

nodelay

--

true

0

false

PMID: 15069387 Dendritic cell production of IL-12 shifts Th0 development towards Th1 differentiation.

Go back
845.0, 721.0
30.0, 30.0

p37

p37

cso30:i:ME_Translation

cso30:i:CC_Cytosol

--

true true true true

--

and

mass

coefficient1:0.1
coefficient2:1.0
stoichiometry:c96 : 1
stoichiometry:c97 : 1

m40*0.1

nodelay

--

true

0

false

PMID: 15069387 Dendritic cell production of IL-12 shifts Th0 development towards Th1 differentiation.

Go back
473.0, 765.0
30.0, 30.0

p38

p38

cso30:i:ME_GeneExpression

cso30:i:CC_Nucleoplasm

--

true true true true

--

and

mass

coefficient1:0.1
coefficient2:1.0
stoichiometry:c100 : 1
stoichiometry:c99 : 1

m26*0.1

nodelay

--

true

0

false

PMID: 15069387, 12646604 In vitro studies demonstrate that this polymorphism in TLR2 results in diminished TNF-a production in response toMtuberculosis andMleprae infection, providing a mechanistic explanation for the clinical findings.

Go back
353.0, 765.0
30.0, 30.0

p39

p39

cso30:i:ME_Translation

cso30:i:CC_Cytosol

--

true true true true

--

and

mass

coefficient1:0.1
coefficient2:1.0
stoichiometry:c101 : 1
stoichiometry:c102 : 1

m93309*0.1

nodelay

--

true

0

false

12646604 In vitro studies demonstrate that this polymorphism in TLR2 results in diminished TNF-a production in response toMtuberculosis andMleprae infection, providing a mechanistic explanation for the clinical findings.

Go back
973.0, 73.0
30.0, 30.0

p4

p4

cso30:i:ME_Binding

cso30:i:CC_Extracellular

--

true true true true

--

and

mass

coefficient1:0.1
coefficient2:1.0
stoichiometry:c12 : 1
stoichiometry:c13 : 1
stoichiometry:c14 : 1

m11*m184*0.1

nodelay

--

true

0

false

PMID: 15069387 The adapter proteins MyD88 and TIRAP/MAL associate via TIRmediated interactions with the TLR, and initiate the formation of a signaling complex involving interleukinreceptor?associated kinases (IRAKs).

Go back
757.0, 993.0
30.0, 30.0

p40

p40

cso30:i:ME_GeneExpression

cso30:i:CC_Nucleoplasm

--

true true true true

--

and

mass

coefficient1:0.1
coefficient2:1.0
stoichiometry:c103 : 1
stoichiometry:c104 : 1

m36*0.1

nodelay

--

true

0

false

PMID: 15069387 an alternative TLR-signaling pathway that leads to the production of the antiviral cytokine IFN-b has been reported in mice.

Go back
841.0, 1025.0
30.0, 30.0

p41

p41

cso30:i:ME_Translation

cso30:i:CC_Cytosol

--

true true true true

--

and

mass

coefficient1:0.1
coefficient2:1.0
stoichiometry:c106 : 1
stoichiometry:c105 : 1

m93217*0.1

nodelay

--

true

0

false

PMID: 15069387 an alternative TLR-signaling pathway that leads to the production of the antiviral cytokine IFN-b has been reported in mice.

Go back
845.0, 369.0
30.0, 30.0

p5

p5

cso30:i:ME_UnknownActivation

cso30:i:CC_Cytosol

--

true true true true

--

and

mass

coefficient1:0.1
coefficient2:1.0
stoichiometry:c15 : 1
stoichiometry:c16 : 1
stoichiometry:c17 : 1

m13*m186*0.1

nodelay

--

true

0

false

PMID: 15069387 TLR4 triggers a complex signaling pathway that leads to the activation of transcription factors, such as nuclear factor- jB (NF-kappaB).

Go back
813.0, 465.0
30.0, 30.0

p6

p6

cso30:i:ME_UnknownActivation

cso30:i:CC_Cytosol

--

true true true true

--

and

mass

coefficient1:0.1
coefficient2:1.0
stoichiometry:c18 : 1
stoichiometry:c20 : 1
stoichiometry:c19 : 1

m15*m14*0.1

nodelay

--

true

0

false

PMID: 15069387 TLR4 triggers a complex signaling pathway that leads to the activation of transcription factors, such as nuclear factor- jB (NF-kappaB).

Go back
785.0, 621.0
30.0, 30.0

p7

p7

cso30:i:ME_Translocation

cso30:i:CC_Cytosol

--

true true true true

--

and

mass

coefficient1:0.1
coefficient2:1.0
stoichiometry:c21 : 1
stoichiometry:c22 : 1

m16*0.1

nodelay

--

true

0

false

PMID: 15069387 Toll-like receptors share a common activation pathway mediated through their TIR signaling domains, resulting in the nuclear translocation and activation of the pro-inflammatory transcription factor NF-kappaB.

Go back
525.0, 749.0
30.0, 30.0

p8

p8

cso30:i:ME_GeneExpression

cso30:i:CC_Nucleoplasm

--

true true true true

--

and

mass

coefficient1:0.1
coefficient2:1.0
stoichiometry:c25 : 1
stoichiometry:c23 : 1

m17*0.1

nodelay

--

true

0

false

PMID: 15069387, 9237759 Interaction of LPS with its receptor TLR4 triggers a complex signaling pathway that leads to the activation of transcription actors, such as nuclear factor- jB (NF-jB), which then induce the activation of the inflammatory genes, such as tumor necrosis factor (TNF)-a, interleukin (IL)-1, IL-6, and IL-8.

Go back
581.0, 785.0
30.0, 30.0

p9

p9

cso30:i:ME_GeneExpression

cso30:i:CC_Nucleoplasm

--

true true true true

--

and

mass

coefficient1:0.1
coefficient2:1.0
stoichiometry:c26 : 1
stoichiometry:c24 : 1

m17*0.1

nodelay

--

true

0

false

PMID: 15069387, 9237759 Interaction of LPS with its receptor TLR4 triggers a complex signaling pathway that leads to the activation of transcription actors, such as nuclear factor- jB (NF-jB), which then induce the activation of the inflammatory genes, such as tumor necrosis factor (TNF)-a, interleukin (IL)-1, IL-6, and IL-8.

Go back
429.0, 40.0

c1

c1

cso30:c:InputProcess

--

true true true true

cso30:c:InputProcess

threshold

--

0

1,

--

Go back
858.0, 75.0

c10

c10

cso30:c:OutputProcess

--

true true true true

cso30:c:OutputProcess

threshold

--

0

1,

--

Go back
480.0, 224.0

c100

c100

cso30:c:InputAssociation

--

true true true true

cso30:c:InputAssociation

threshold

--

0

1,

--

Go back
390.70656391098186, 786.1468285180592

c101

c101

cso30:c:InputAssociation

--

true true true true

cso30:c:InputAssociation

threshold

--

0

1,

--

Go back
341.145770236779, 793.0

c102

c102

cso30:c:OutputProcess

--

true true true true

cso30:c:OutputProcess

threshold

--

0

1,

--

Go back
794.5737059057561, 937.0

c103

c103

cso30:c:InputAssociation

--

true true true true

cso30:c:InputAssociation

threshold

--

0

1,

--

Go back
752.7492919018569, 1017.0

c104

c104

cso30:c:OutputProcess

--

true true true true

cso30:c:OutputProcess

threshold

--

0

1,

--

Go back
856.0, 1055.0

c105

c105

cso30:c:OutputProcess

--

true true true true

cso30:c:OutputProcess

threshold

--

0

1,

--

Go back
746.0, 1037.0

c106

c106

cso30:c:InputAssociation

--

true true true true

cso30:c:InputAssociation

threshold

--

0

1,

--

Go back
851.1313708498985, 82.91959594928933

c11

c11

cso30:c:InputProcess

--

true true true true

cso30:c:InputProcess

threshold

--

0

1,

--

Go back
936.0, 107.49759883100866

c12

c12

cso30:c:InputProcess

--

true true true true

cso30:c:InputProcess

threshold

--

0

1,

--

Go back
935.0, 110.59468783397114

c13

c13

cso30:c:InputProcess

--

true true true true

cso30:c:InputProcess

threshold

--

0

1,

--

Go back
988.0, 103.0

c14

c14

cso30:c:OutputProcess

--

true true true true

cso30:c:OutputProcess

threshold

--

0

1,

--

Go back
880.9496760706777, 290.0

c15

c15

cso30:c:InputAssociation

--

true true true true

cso30:c:InputAssociation

threshold

--

0

1,

--

Go back
883.0, 384.0

c16

c16

cso30:c:InputProcess

--

true true true true

cso30:c:InputProcess

threshold

--

0

1,

--

Go back
873.0, 399.0

c17

c17

cso30:c:OutputProcess

--

true true true true

cso30:c:OutputProcess

threshold

--

0

1,

--

Go back
805.0, 434.0

c18

c18

cso30:c:InputProcess

--

true true true true

cso30:c:InputProcess

threshold

--

0

1,

--

Go back
809.7898696961713, 495.0

c19

c19

cso30:c:OutputProcess

--

true true true true

cso30:c:OutputProcess

threshold

--

0

1,

--

Go back
688.0, 63.0

c2

c2

cso30:c:InputProcess

--

true true true true

cso30:c:InputProcess

threshold

--

0

1,

--

Go back
850.8973391898977, 467.0

c20

c20

cso30:c:InputAssociation

--

true true true true

cso30:c:InputAssociation

threshold

--

0

1,

--

Go back
800.0, 574.0

c21

c21

cso30:c:InputProcess

--

true true true true

cso30:c:InputProcess

threshold

--

0

1,

--

Go back
644.9865221605535, 644.0

c22

c22

cso30:c:OutputProcess

--

true true true true

cso30:c:OutputProcess

threshold

--

0

1,

--

Go back
540.0, 779.0

c23

c23

cso30:c:OutputProcess

--

true true true true

cso30:c:OutputProcess

threshold

--

0

1,

--

Go back
596.0, 815.0

c24

c24

cso30:c:OutputProcess

--

true true true true

cso30:c:OutputProcess

threshold

--

0

1,

--

Go back
562.5559743736493, 743.0

c25

c25

cso30:c:InputAssociation

--

true true true true

cso30:c:InputAssociation

threshold

--

0

1,

--

Go back
604.6752787613661, 754.0

c26

c26

cso30:c:InputAssociation

--

true true true true

cso30:c:InputAssociation

threshold

--

0

1,

--

Go back
630.0, 754.0

c27

c27

cso30:c:InputAssociation

--

true true true true

cso30:c:InputAssociation

threshold

--

0

1,

--

Go back
648.0, 803.0

c28

c28

cso30:c:OutputProcess

--

true true true true

cso30:c:OutputProcess

threshold

--

0

1,

--

Go back
638.0, 746.0

c29

c29

cso30:c:InputAssociation

--

true true true true

cso30:c:InputAssociation

threshold

--

0

1,

--

Go back
694.0, 55.0

c3

c3

cso30:c:OutputProcess

--

true true true true

cso30:c:OutputProcess

threshold

--

0

1,

--

Go back
692.0, 791.0

c30

c30

cso30:c:OutputProcess

--

true true true true

cso30:c:OutputProcess

threshold

--

0

1,

--

Go back
229.0, 208.0

c31

c31

cso30:c:InputProcess

--

true true true true

cso30:c:InputProcess

threshold

--

0

1,

--

Go back
300.0, 222.0

c32

c32

cso30:c:InputProcess

--

true true true true

cso30:c:InputProcess

threshold

--

0

1,

--

Go back
343.0, 236.0

c33

c33

cso30:c:OutputProcess

--

true true true true

cso30:c:OutputProcess

threshold

--

0

1,

--

Go back
216.0, 336.0

c34

c34

cso30:c:InputProcess

--

true true true true

cso30:c:InputProcess

threshold

--

0

1,

--

Go back
219.0, 217.0

c35

c35

cso30:c:InputProcess

--

true true true true

cso30:c:InputProcess

threshold

--

0

1,

--

Go back
223.81174733563773, 350.0

c36

c36

cso30:c:OutputProcess

--

true true true true

cso30:c:OutputProcess

threshold

--

0

1,

--

Go back
156.74093817917475, 204.0

c37

c37

cso30:c:InputProcess

--

true true true true

cso30:c:InputProcess

threshold

--

0

1,

--

Go back
134.0, 174.0

c38

c38

cso30:c:InputProcess

--

true true true true

cso30:c:InputProcess

threshold

--

0

1,

--

Go back
149.0, 233.0

c39

c39

cso30:c:OutputProcess

--

true true true true

cso30:c:OutputProcess

threshold

--

0

1,

--

Go back
744.0, 91.0

c4

c4

cso30:c:InputProcess

--

true true true true

cso30:c:InputProcess

threshold

--

0

1,

--

Go back
126.0, 100.0

c40

c40

cso30:c:InputProcess

--

true true true true

cso30:c:InputProcess

threshold

--

0

1,

--

Go back
108.0, 114.0

c41

c41

cso30:c:InputProcess

--

true true true true

cso30:c:InputProcess

threshold

--

0

1,

--

Go back
131.0, 400.0

c42

c42

cso30:c:InputProcess

--

true true true true

cso30:c:InputProcess

threshold

--

0

1,

--

Go back
344.0, 123.0

c43

c43

cso30:c:InputProcess

--

true true true true

cso30:c:InputProcess

threshold

--

0

1,

--

Go back
353.0, 115.0

c44

c44

cso30:c:OutputProcess

--

true true true true

cso30:c:OutputProcess

threshold

--

0

1,

--

Go back
123.0, 412.0

c45

c45

cso30:c:OutputProcess

--

true true true true

cso30:c:OutputProcess

threshold

--

0

1,

--

Go back
410.0, 59.0

c46

c46

cso30:c:InputProcess

--

true true true true

cso30:c:InputProcess

threshold

--

0

1,

--

Go back
229.0, 126.99997606097531

c47

c47

cso30:c:InputProcess

--

true true true true

cso30:c:InputProcess

threshold

--

0

1,

--

Go back
423.0, 119.0

c48

c48

cso30:c:OutputProcess

--

true true true true

cso30:c:OutputProcess

threshold

--

0

1,

--

Go back
91.0, 534.0

c49

c49

cso30:c:InputProcess

--

true true true true

cso30:c:InputProcess

threshold

--

0

1,

--

Go back
652.0, 88.65685424949238

c5

c5

cso30:c:InputProcess

--

true true true true

cso30:c:InputProcess

threshold

--

0

1,

--

Go back
150.99001871102277, 533.0

c50

c50

cso30:c:InputProcess

--

true true true true

cso30:c:InputProcess

threshold

--

0

1,

--

Go back
143.0, 548.0

c51

c51

cso30:c:OutputProcess

--

true true true true

cso30:c:OutputProcess

threshold

--

0

1,

--

Go back
142.53254876827103, 671.0

c52

c52

cso30:c:InputProcess

--

true true true true

cso30:c:InputProcess

threshold

--

0

1,

--

Go back
86.0, 741.020613557655

c53

c53

cso30:c:InputProcess

--

true true true true

cso30:c:InputProcess

threshold

--

0

1,

--

Go back
135.0, 720.0

c54

c54

cso30:c:OutputProcess

--

true true true true

cso30:c:OutputProcess

threshold

--

0

1,

--

Go back
84.0, 801.0

c55

c55

cso30:c:InputProcess

--

true true true true

cso30:c:InputProcess

threshold

--

0

1,

--

Go back
145.32175840955796, 807.0

c56

c56

cso30:c:InputProcess

--

true true true true

cso30:c:InputProcess

threshold

--

0

1,

--

Go back
139.0, 856.0

c57

c57

cso30:c:OutputProcess

--

true true true true

cso30:c:OutputProcess

threshold

--

0

1,

--

Go back
777.1513543886333, 434.0

c58

c58

cso30:c:InputProcess

--

true true true true

cso30:c:InputProcess

threshold

--

0

1,

--

Go back
775.0, 499.0

c59

c59

cso30:c:OutputProcess

--

true true true true

cso30:c:OutputProcess

threshold

--

0

1,

--

Go back
750.0, 83.0

c6

c6

cso30:c:OutputProcess

--

true true true true

cso30:c:OutputProcess

threshold

--

0

1,

--

Go back
221.0, 498.3793510540314

c60

c60

cso30:c:InputAssociation

--

true true true true

cso30:c:InputAssociation

threshold

--

0

1,

--

Go back
221.0, 856.0

c61

c61

cso30:c:InputAssociation

--

true true true true

cso30:c:InputAssociation

threshold

--

0

1,

--

Go back
472.0, 871.0

c62

c62

cso30:c:OutputProcess

--

true true true true

cso30:c:OutputProcess

threshold

--

0

1,

--

Go back
379.0, 916.0

c63

c63

cso30:c:InputAssociation

--

true true true true

cso30:c:InputAssociation

threshold

--

0

1,

--

Go back
323.0, 916.0

c64

c64

cso30:c:OutputProcess

--

true true true true

cso30:c:OutputProcess

threshold

--

0

1,

--

Go back
483.0, 72.0

c65

c65

cso30:c:InputProcess

--

true true true true

cso30:c:InputProcess

threshold

--

0

1,

--

Go back
551.0, 72.0

c66

c66

cso30:c:InputProcess

--

true true true true

cso30:c:InputProcess

threshold

--

0

1,

--

Go back
527.0, 87.0

c67

c67

cso30:c:OutputProcess

--

true true true true

cso30:c:OutputProcess

threshold

--

0

1,

--

Go back
632.0, 143.0

c68

c68

cso30:c:InputProcess

--

true true true true

cso30:c:InputProcess

threshold

--

0

1,

--

Go back
544.0, 120.0

c69

c69

cso30:c:InputProcess

--

true true true true

cso30:c:InputProcess

threshold

--

0

1,

--

Go back
808.0, 82.33356771766739

c7

c7

cso30:c:InputProcess

--

true true true true

cso30:c:InputProcess

threshold

--

0

1,

--

Go back
580.5610156344095, 130.0

c70

c70

cso30:c:OutputProcess

--

true true true true

cso30:c:OutputProcess

threshold

--

0

1,

--

Go back
116.0, 923.0

c71

c71

cso30:c:InputProcess

--

true true true true

cso30:c:InputProcess

threshold

--

0

1,

--

Go back
802.9981507165726, 928.1720032412167

c72

c72

cso30:c:InputAssociation

--

true true true true

cso30:c:InputAssociation

threshold

--

0

1,

--

Go back
131.0, 996.0

c73

c73

cso30:c:OutputProcess

--

true true true true

cso30:c:OutputProcess

threshold

--

0

1,

--

Go back
794.8997790018358, 935.0

c74

c74

cso30:c:InputAssociation

--

true true true true

cso30:c:InputAssociation

threshold

--

0

1,

--

Go back
137.0522769188681, 932.0

c75

c75

cso30:c:InputProcess

--

true true true true

cso30:c:InputProcess

threshold

--

0

1,

--

Go back
706.0, 928.0

c76

c76

cso30:c:OutputProcess

--

true true true true

cso30:c:OutputProcess

threshold

--

0

1,

--

Go back
722.6422871255307, 973.0

c77

c77

cso30:c:OutputProcess

--

true true true true

cso30:c:OutputProcess

threshold

--

0

1,

--

Go back
553.1927794053147, 946.0

c78

c78

cso30:c:InputAssociation

--

true true true true

cso30:c:InputAssociation

threshold

--

0

1,

--

Go back
696.0, 1011.0

c79

c79

cso30:c:InputAssociation

--

true true true true

cso30:c:InputAssociation

threshold

--

0

1,

--

Go back
808.0, 82.84626368067619

c8

c8

cso30:c:InputProcess

--

true true true true

cso30:c:InputProcess

threshold

--

0

1,

--

Go back
541.0, 1171.0

c80

c80

cso30:c:OutputProcess

--

true true true true

cso30:c:OutputProcess

threshold

--

0

1,

--

Go back
700.0, 1175.0

c81

c81

cso30:c:OutputProcess

--

true true true true

cso30:c:OutputProcess

threshold

--

0

1,

--

Go back
596.0, 931.0

c82

c82

cso30:c:OutputProcess

--

true true true true

cso30:c:OutputProcess

threshold

--

0

1,

--

Go back
239.0, 996.0

c83

c83

cso30:c:InputAssociation

--

true true true true

cso30:c:InputAssociation

threshold

--

0

1,

--

Go back
636.0, 11.520166729278571

c84

c84

cso30:c:InputProcess

--

true true true true

cso30:c:InputProcess

threshold

--

0

1,

--

Go back
1072.0, 571.0

c85

c85

cso30:c:InputProcess

--

true true true true

cso30:c:InputProcess

threshold

--

0

1,

--

Go back
1039.9936076697743, 549.0

c86

c86

cso30:c:OutputProcess

--

true true true true

cso30:c:OutputProcess

threshold

--

0

1,

--

Go back
643.0, 1220.0

c87

c87

cso30:c:InputProcess

--

true true true true

cso30:c:InputProcess

threshold

--

0

1,

--

Go back
618.0, 1183.0

c88

c88

cso30:c:InputProcess

--

true true true true

cso30:c:InputProcess

threshold

--

0

1,

--

Go back
566.0, 1220.0

c89

c89

cso30:c:InputProcess

--

true true true true

cso30:c:InputProcess

threshold

--

0

1,

--

Go back
848.0, 83.0

c9

c9

cso30:c:InputProcess

--

true true true true

cso30:c:InputProcess

threshold

--

0

1,

--

Go back
620.0, 1235.0

c90

c90

cso30:c:OutputProcess

--

true true true true

cso30:c:OutputProcess

threshold

--

0

1,

--

Go back
806.8311266610432, 892.6350704017563

c91

c91

cso30:c:InputAssociation

--

true true true true

cso30:c:InputAssociation

threshold

--

0

1,

--

Go back
747.0, 888.0

c92

c92

cso30:c:OutputProcess

--

true true true true

cso30:c:OutputProcess

threshold

--

0

1,

--

Go back
806.4390355750693, 856.9429151725549

c93

c93

cso30:c:InputAssociation

--

true true true true

cso30:c:InputAssociation

threshold

--

0

1,

--

Go back
788.0, 818.6234062401061

c94

c94

cso30:c:OutputProcess

--

true true true true

cso30:c:OutputProcess

threshold

--

0

1,

--

Go back
819.0, 793.0

c95

c95

cso30:c:InputAssociation

--

true true true true

cso30:c:InputAssociation

threshold

--

0

1,

--

Go back
719.0, 743.7360294541049

c96

c96

cso30:c:InputAssociation

--

true true true true

cso30:c:InputAssociation

threshold

--

0

1,

--

Go back
875.0, 736.0

c97

c97

cso30:c:OutputProcess

--

true true true true

cso30:c:OutputProcess

threshold

--

0

1,

--

Go back
891.0, 796.0

c98

c98

cso30:c:OutputProcess

--

true true true true

cso30:c:OutputProcess

threshold

--

0

1,

--

Go back
503.0, 794.0

c99

c99

cso30:c:OutputProcess

--

true true true true

cso30:c:OutputProcess

threshold

--

0

1,

--

Go back