1. Information
    majorVersion:3 minorVersion:0 projectID:local projectVersionID:undef fileName:/home/ikeda/eclipse/workspace/macrophage/csml/ok/csml/12106783.csml convertedTime:2009.07.01.10:40

  2. Original Literature
  3. Model OverView
  4. Model Abstracts
  5. Model Detail
  6. Download
Original Literature Model OverView
Publication
Title Toll receptors, CD14, and macrophage activation and deactivation by LPS.
Authors Dobrovolskaia MA, Vogel SN.
Affiliation Department of Microbiology and Immunology, Uniformed Services University ofHealth Sciences, 4301 Jones Bridge Road, Bethesda, MD 20814, USA.
Abstract This review will focus on the molecular mechanisms of macrophage activation anddesensitization by bacterial lipopolysaccharide (LPS). The most recent advancesin the understanding of the function of the LPS receptor complex and its role inthe development of the septic shock syndrome and endotoxin tolerance will bediscussed.
PMID 12106783
Model Abstract

Entity

e1: e10: e11:LPS:CD14 e12:CD14 e13:LPS:CD14 e14:TLR4 e15:MD2 e16:TLR4:MD2 e17:LPS:CD14:TLR4:MD2 e18:CD11b:CD18 e19:LPS:CD11b:CD18 e2: e20:CD11c:CD18 e21:LPS:CD11c:CD18 e22:LPS e23:Nod1 e24:LPS:Nod1 e25:CXCR4:GDF5:HSP90:HSP70 e26:LPS:CXCXR4:GDF5:HSP90:HSP70 e27:TNF-alpha e28:ERK2 e29:ERK2{active} e3: e30:NF-kappaB: e31:NF-kappaB{active} e32:AP-1 e33:AP-1{active} e34:NF-kappaB{active} e35:IL-12p40 e36:MCP-5 e37:IFN-gamma e38:TLR2 e39:LAM e4: e40:LAM:TLR2 e41:STF e42:STF:TLR2 e43:IL-8 e44:p19/IL-13 e45:LPS:TLR2 e46:cox2 e47:IL-12p35 e48:IP-10 e49:IRF-1 e5:LPS e50: e51: e52: e53: e54: e55: e56: e57: e58: e59: e6:CD14 e60: e61: e62: e63:ICSBP e64:IKKalpha:IKKbeta:IKKgamma e65:IKKalpha:Ikkbeta:IKKgamma{active} e66:Ikappa-B:NF-kappaB e67:Ikappa-B{p}:NF-kappaB e68:Ikappa-B{ub}{NF-kappaB e69:protein remnants e7: e70:I-kappaB e71:ERK1 e72:ERK1{active} e73:p38 e74:p38{active} e75:JNK1 e76:JNK1{active} e77:JNK2 e78:JNK2{active} e8: e9:

Process

p1 p10 p11 p12 p13 p14 p15 p16 p17 p18 p19 p2 p20 p21 p22 p23 p24 p25 p26 p27 p28 p29 p3 p30 p31 p32 p33 p34 p35 p36 p37 p38 p39 p4 p40 p41 p42 p43 p44 p45 p46 p47 p48 p49 p5 p6 p7 p8 p9
Model Detail
229.39804417430258, 70.4019845119413
1050.1492969697163, 1637.7182340855984

--

e1

cso30:c:EntityBiologicalCompartment

cso30:i:CC_PlasmaMembrane

--

--

--

true true true true

csml-variable:Double

m1

0

false

infinite

0

unit false true false

--

Go back
223.69758625973355, 70.90525492299312
1033.3984638839977, 1561.3369227249038

--

e10

cso30:c:EntityBiologicalCompartment

cso30:i:CC_Cytosol

--

--

--

true true true true

csml-variable:Double

m10

0

false

infinite

0

unit false true false

--

Go back
1214.0, 310.0
48.03314917127071, 53.370165745856355

LPS:CD14

--

e11

cso30:c:Complex

cso30:i:CC_PlasmaMembrane_ExternalSideOfPlasmaMembrane_

--

p1

p4

true true true true

csml-variable:Double

m11

0

false

infinite

0

unit false false false

--

Go back
1363.0, 120.5
54.373113302475346, 33.53008653652647

CD14

--

e12

cso30:c:Protein

cso30:i:CC_Extracellular

--

--

p2

true true true true

csml-variable:Double

m12

0

false

infinite

0

unit false false false

--

Go back
1547.5, 118.0
36.97250458256956, 45.27245459090152

LPS:CD14

--

e13

cso30:c:Complex

cso30:i:CC_Extracellular

--

p2

--

true true true true

csml-variable:Double

m13

0

false

infinite

0

unit false false false

--

Go back
1226.5, 439.0
39.0, 60.0

TLR4

--

e14

cso30:c:Protein

cso30:i:CC_PlasmaMembrane_IntegralToPlasmaMembrane_

--

--

p3

true true true true

csml-variable:Double

m14

0

false

infinite

0

unit false false false

--

Go back
1278.0, 498.5
47.671563694908436, 29.397464278526872

MD2

--

e15

cso30:c:Protein

cso30:i:CC_Extracellular

--

--

p3

true true true true

csml-variable:Double

m15

0

false

infinite

0

unit false false false

--

Go back
1232.5, 579.0
35.37711028283271, 68.47182635386976

TLR4:MD2

--

e16

cso30:c:Complex

cso30:i:CC_PlasmaMembrane_IntegralToPlasmaMembrane_

--

p3

p4

true true true true

csml-variable:Double

m16

0

false

infinite

0

unit false false false

--

Go back
1230.0, 679.0
40.235294117647065, 67.05882352941177

LPS:CD14:TLR4:MD2

--

e17

cso30:c:Complex

cso30:i:CC_PlasmaMembrane_IntegralToPlasmaMembrane_

--

true true true true

csml-variable:Double

m17

0

false

infinite

0

unit false false false

--

Go back
1220.0, 793.0
43.856353591160236, 48.7292817679558

CD11b:CD18

--

e18

cso30:c:Complex

cso30:i:CC_PlasmaMembrane_IntegralToPlasmaMembrane_

--

--

p5

true true true true

csml-variable:Double

m18

0

false

infinite

0

unit false false false

--

Go back
1228.5, 879.0
43.0, 60.0

LPS:CD11b:CD18

--

e19

cso30:c:Complex

cso30:i:CC_PlasmaMembrane_IntegralToPlasmaMembrane_

--

true true true true

csml-variable:Double

m19

0

false

infinite

0

unit false false false

--

Go back
229.39804417430258, 70.4019845119413
1050.1492969697163, 1637.7182340855984

--

e2

cso30:c:EntityBiologicalCompartment

cso30:i:CC_PlasmaMembrane_ExternalSideOfPlasmaMembrane_

--

--

--

true true true true

csml-variable:Double

m2

0

false

infinite

0

unit false true false

--

Go back
1235.0, 971.0
46.143646408839764, 51.2707182320442

CD11c:CD18

--

e20

cso30:c:Complex

cso30:i:CC_PlasmaMembrane_IntegralToPlasmaMembrane_

--

--

p6

true true true true

csml-variable:Double

m20

0

false

infinite

0

unit false false false

--

Go back
1228.5, 1071.0
43.0, 60.0

LPS:CD11c:CD18

--

e21

cso30:c:Complex

cso30:i:CC_PlasmaMembrane_ExternalSideOfPlasmaMembrane_

--

true true true true

csml-variable:Double

m21

0

false

infinite

0

unit false false false

--

Go back
788.0, 252.0
60.0, 34.0

LPS

--

e22

cso30:c:SmallMolecule

cso30:i:CC_Cytosol

--

p8

p9

true true true true

csml-variable:Double

m22

0

false

infinite

0

unit false false false

--

Go back
613.5, 242.0
33.28436305091568, 53.974642785268664

Nod1

--

e23

cso30:c:Protein

cso30:i:CC_Cytosol

--

--

p9

true true true true

csml-variable:Double

m23

0

false

infinite

0

unit false false false

--

Go back
698.5, 329.0
39.02199633394433, 47.782036327278796

LPS:Nod1

--

e24

cso30:c:Complex

cso30:i:CC_Cytosol

--

true true true true

csml-variable:Double

m24

0

false

infinite

0

unit false false false

--

Go back
1234.0, 1161.0
48.1764705882353, 80.2941176470588

CXCR4:GDF5:HSP90:HSP70

--

e25

cso30:c:Complex

cso30:i:CC_PlasmaMembrane_IntegralToPlasmaMembrane_

--

--

p10

true true true true

csml-variable:Double

m25

0

false

infinite

0

unit false false false

--

Go back
1231.0, 1302.0
46.49999999999999, 77.5

LPS:CXCXR4:GDF5:HSP90:HSP70

--

e26

cso30:c:Complex

cso30:i:CC_PlasmaMembrane_IntegralToPlasmaMembrane_

--

true true true true

csml-variable:Double

m26

0

false

infinite

0

unit false false false

--

Go back
545.0, 1238.0
57.61245674740484, 30.72664359861592

TNF-alpha

--

e27

cso30:c:mRNA

cso30:i:CC_Nucleoplasm

--

true true true true

csml-variable:Double

m27

0

false

infinite

0

unit false false false

--

Go back
866.0, 474.0
23.65294667913938, 54.58372310570626

ERK2

--

e28

cso30:c:Protein

cso30:i:CC_Cytosol

--

--

p12 p37

true true true true

csml-variable:Double

m28

0

false

infinite

0

unit false false false

--

Go back
884.0, 681.0
23.811038353601493, 54.94855004677268

ERK2{active}

--

e29

cso30:c:Protein

cso30:i:CC_Cytosol

--

true true true true

csml-variable:Double

m29

0

false

infinite

0

unit false false false

--

Go back
250.40103011369695, 92.96008690981454
1008.1433250909263, 1592.6020292898534

--

e3

cso30:c:EntityBiologicalCompartment

cso30:i:CC_PlasmaMembrane_IntegralToPlasmaMembrane_

--

--

--

true true true true

csml-variable:Double

m3

0

false

infinite

0

unit false true false

--

Go back
528.0, 702.5
60.21734755484, 37.13403099215134

NF-kappaB:

--

e30

cso30:c:Protein

cso30:i:CC_Cytosol

--

--

p7 p48 p49

true true true true

csml-variable:Double

m30

0

false

infinite

0

unit false false false

--

Go back
611.0, 804.5
53.92634332863755, 33.25457838599316

NF-kappaB{active}

--

e31

cso30:c:Protein

cso30:i:CC_Cytosol

--

true true true true

csml-variable:Double

m31

0

false

infinite

0

unit false false false

--

Go back
747.0, 766.5
57.76615013081103, 35.622459247333474

AP-1

--

e32

cso30:c:Protein

cso30:i:CC_Cytosol

--

--

p13 p45 p46

true true true true

csml-variable:Double

m32

0

false

infinite

0

unit false false false

--

Go back
1023.0, 728.5
50.67820487019521, 31.251559669953714

AP-1{active}

--

e33

cso30:c:Protein

cso30:i:CC_Cytosol

--

p13 p45 p46

--

true true true true

csml-variable:Double

m33

0

false

infinite

0

unit false false false

--

Go back
612.0, 1040.5
52.356610988126384, 32.28657677601127

NF-kappaB{active}

--

e34

cso30:c:Protein

cso30:i:CC_Nucleoplasm

--

true true true true

csml-variable:Double

m34

0

false

infinite

0

unit false false false

--

Go back
610.0, 1132.0
48.32179930795848, 25.771626297577853

IL-12p40

--

e35

cso30:c:mRNA

cso30:i:CC_Nucleoplasm

--

p15

--

true true true true

csml-variable:Double

m35

0

false

infinite

0

unit false false false

--

Go back
728.0, 1203.0
48.99653979238755, 26.131487889273355

MCP-5

--

e36

cso30:c:mRNA

cso30:i:CC_Nucleoplasm

--

p16

--

true true true true

csml-variable:Double

m36

0

false

infinite

0

unit false false false

--

Go back
737.0, 1333.0
54.91349480968858, 29.28719723183391

IFN-gamma

--

e37

cso30:c:mRNA

cso30:i:CC_Nucleoplasm

--

p17

--

true true true true

csml-variable:Double

m37

0

false

infinite

0

unit false false false

--

Go back
514.5, 83.0
39.0, 60.0

TLR2

--

e38

cso30:c:Protein

cso30:i:CC_PlasmaMembrane_IntegralToPlasmaMembrane_

--

--

p18 p19 p22

true true true true

csml-variable:Double

m38

0

false

infinite

0

unit false false false

--

Go back
508.0, 32.0
60.0, 34.0

LAM

--

e39

cso30:c:SmallMolecule

cso30:i:CC_Extracellular

--

--

p18

true true true true

csml-variable:Double

m39

0

false

infinite

0

unit false false false

--

Go back
289.2565541015765, 132.4367661060927
930.4322771151685, 1513.6486708972961

--

e4

cso30:c:EntityBiologicalCompartment

cso30:i:CC_PlasmaMembrane_InternalSideOfPlasmaMembrane_

--

--

--

true true true true

csml-variable:Double

m4

0

false

infinite

0

unit false true false

--

Go back
679.5, 69.0
36.68888401666302, 71.01074325805745

LAM:TLR2

--

e40

cso30:c:Complex

cso30:i:CC_PlasmaMembrane_IntegralToPlasmaMembrane_

--

true true true true

csml-variable:Double

m40

0

false

infinite

0

unit false false false

--

Go back
128.0, 65.5
51.04, 38.279999999999994

STF

--

e41

cso30:c:Protein

cso30:i:CC_Extracellular

--

--

p19

true true true true

csml-variable:Double

m41

0

false

infinite

0

unit false false false

--

Go back
308.5, 71.0
35.03047577285683, 67.80092085069063

STF:TLR2

--

e42

cso30:c:Complex

cso30:i:CC_PlasmaMembrane_IntegralToPlasmaMembrane_

--

true true true true

csml-variable:Double

m42

0

false

infinite

0

unit false false false

--

Go back
512.0, 1407.0
52.16262975778547, 27.820069204152247

IL-8

--

e43

cso30:c:mRNA

cso30:i:CC_Nucleoplasm

--

p20

--

true true true true

csml-variable:Double

m43

0

false

infinite

0

unit false false false

--

Go back
512.0, 1189.0
60.0, 32.0

p19/IL-13

--

e44

cso30:c:mRNA

cso30:i:CC_Nucleoplasm

--

p21

--

true true true true

csml-variable:Double

m44

0

false

infinite

0

unit false false false

--

Go back
850.5, 87.0
31.0, 60.0

LPS:TLR2

--

e45

cso30:c:Complex

cso30:i:CC_PlasmaMembrane_IntegralToPlasmaMembrane_

--

p22

--

true true true true

csml-variable:Double

m45

0

false

infinite

0

unit false false false

--

Go back
650.0, 1374.0
56.73010380622837, 30.2560553633218

cox2

--

e46

cso30:c:mRNA

cso30:i:CC_Nucleoplasm

--

p23

--

true true true true

csml-variable:Double

m46

0

false

infinite

0

unit false false false

--

Go back
890.0, 1288.0
60.0, 32.0

IL-12p35

--

e47

cso30:c:mRNA

cso30:i:CC_Nucleoplasm

--

p24

--

true true true true

csml-variable:Double

m47

0

false

infinite

0

unit false false false

--

Go back
832.0, 1345.0
55.432525951557096, 29.56401384083045

IP-10

--

e48

cso30:c:mRNA

cso30:i:CC_Nucleoplasm

--

p25

--

true true true true

csml-variable:Double

m48

0

false

infinite

0

unit false false false

--

Go back
688.0, 1081.0
60.0, 32.0

IRF-1

--

e49

cso30:c:mRNA

cso30:i:CC_Nucleoplasm

--

p26

--

true true true true

csml-variable:Double

m49

0

false

infinite

0

unit false false false

--

Go back
1445.0, 248.0
73.59966358284272, 41.70647603027754

LPS

--

e5

cso30:c:SmallMolecule

cso30:i:CC_Extracellular

--

--

p1 p2 p5 p6 p8 p10 p22

true true true true

csml-variable:Double

m5

0

false

infinite

0

unit false false false

--

Go back
439.09850148490034, 1004.3280140453828
579.7771760847082, 564.7253876598842

--

e50

cso30:c:EntityBiologicalCompartment

cso30:i:CC_NuclearEnvelopeLumen

--

--

--

true true true true

csml-variable:Double

m50

0

false

infinite

0

unit false true false

--

Go back
501.71875514023185, 1017.7111847513427
339.01309737541584, 547.3313818798057

--

e51

cso30:c:EntityBiologicalCompartment

cso30:i:CC_NuclearPore

--

--

--

true true true true

csml-variable:Double

m51

0

false

infinite

0

unit false true false

--

Go back
446.6561183053715, 1011.8654165500838
564.6619424437667, 549.6505826504826

--

e52

cso30:c:EntityBiologicalCompartment

cso30:i:CC_NuclearInnerMembrane

--

--

--

true true true true

csml-variable:Double

m52

0

false

infinite

0

unit false true false

--

Go back
447.7357778511531, 1013.0250169354214
562.5026233522029, 547.3313818798057

--

e53

cso30:c:EntityBiologicalCompartment

cso30:i:CC_NuclearLumen

--

--

--

true true true true

csml-variable:Double

m53

0

false

infinite

0

unit false true false

--

Go back
439.09850148490034, 1004.3280140453828
579.7771760847082, 564.7253876598842

--

e54

cso30:c:EntityBiologicalCompartment

cso30:i:CC_NuclearOuterMembrane

--

--

--

true true true true

csml-variable:Double

m54

0

false

infinite

0

unit false true false

--

Go back
439.09850148490034, 1004.3280140453828
579.7771760847082, 564.7253876598842

--

e55

cso30:c:EntityBiologicalCompartment

cso30:i:CC_Nucleus

--

--

--

true true true true

csml-variable:Double

m55

0

false

infinite

0

unit false true false

--

Go back
447.7357778511531, 1013.0250169354214
562.5026233522029, 547.3313818798057

--

e56

cso30:c:EntityBiologicalCompartment

cso30:i:CC_Nucleoplasm

--

--

--

true true true true

csml-variable:Double

m56

0

false

infinite

0

unit false true false

--

Go back
862.3250434312793, 1236.248091113097
36.2212923737166, 35.21764487995496

--

e57

cso30:c:EntityBiologicalCompartment

cso30:i:CC_NuclearBody

--

--

--

true true true true

csml-variable:Double

m57

0

false

infinite

0

unit false true false

--

Go back
767.3150034024999, 1398.592145060497
102.56765684925, 99.72563313911733

--

e58

cso30:c:EntityBiologicalCompartment

cso30:i:CC_Nucleolus

--

--

--

true true true true

csml-variable:Double

m58

0

false

infinite

0

unit false true false

--

Go back
439.09850148490034, 1004.3280140453828
579.7771760847082, 564.7253876598842

--

e59

cso30:c:EntityBiologicalCompartment

cso30:i:CC_NuclearEnvelope

--

--

--

true true true true

csml-variable:Double

m59

0

false

infinite

0

unit false true false

--

Go back
1246.5, 200.0
30.603743207888904, 49.62769168846851

CD14

--

e6

cso30:c:Protein

cso30:i:CC_Extracellular

--

--

p1

true true true true

csml-variable:Double

m6

0

false

infinite

0

unit false false false

--

Go back
575.7487197064373, 1255.2873099571407
18.360691273528598, 9.494894388242674

--

e60

cso30:c:EntityBiologicalCompartment

cso30:i:CC_Chromatin

--

--

--

true true true true

csml-variable:Double

m60

0

false

infinite

0

unit false true false

--

Go back
575.1356042533794, 1226.971288030388
62.84433393841835, 121.49548942990717

--

e61

cso30:c:EntityBiologicalCompartment

cso30:i:CC_NuclearChromosome

--

--

--

true true true true

csml-variable:Double

m61

0

false

infinite

0

unit false true false

--

Go back
601.499568734863, 1305.9927445701649
9.809847248923816, 10.536194205303598

--

e62

cso30:c:EntityBiologicalCompartment

cso30:i:CC_NuclearCentromere

--

--

--

true true true true

csml-variable:Double

m62

0

false

infinite

0

unit false true false

--

Go back
844.0, 1427.0
52.31833910034602, 27.903114186851212

ICSBP

--

e63

cso30:c:mRNA

cso30:i:CC_Nucleolus

--

p27

--

true true true true

csml-variable:Double

m63

0

false

infinite

0

unit false false false

--

Go back
316.5, 435.0
43.0, 60.0

IKKalpha:IKKbeta:IKKgamma

--

e64

cso30:c:Complex

cso30:i:CC_Cytosol

--

--

p28

true true true true

csml-variable:Double

m64

0

false

infinite

0

unit false false false

--

Go back
320.5, 539.0
43.0, 60.0

IKKalpha:Ikkbeta:IKKgamma{active}

--

e65

cso30:c:Complex

cso30:i:CC_Cytosol

--

true true true true

csml-variable:Double

m65

0

false

infinite

0

unit false false false

--

Go back
305.0, 654.0
41.76795580110496, 46.40883977900553

Ikappa-B:NF-kappaB

--

e66

cso30:c:Complex

cso30:i:CC_Cytosol

--

--

p30

true true true true

csml-variable:Double

m66

0

false

infinite

0

unit false false false

--

Go back
500.0, 613.0
60.0, 48.0

Ikappa-B{p}:NF-kappaB

--

e67

cso30:c:Protein

cso30:i:CC_Cytosol

--

true true true true

csml-variable:Double

m67

0

false

infinite

0

unit false false false

--

Go back
434.0, 782.0
48.390482855143446, 37.09937018894332

Ikappa-B{ub}{NF-kappaB

--

e68

cso30:c:Protein

cso30:i:CC_Cytosol

--

true true true true

csml-variable:Double

m68

0

false

infinite

0

unit false false false

--

Go back
433.0, 941.0
42.25157955198163, 40.843193566915566

protein remnants

--

e69

cso30:c:EntityBiological

cso30:i:CC_Cytosol

--

p32

--

true true true true

csml-variable:Double

m69

0

false

infinite

0

unit false false false

--

Go back
227.43286224629716, 52.18330846495089
1045.5333015160165, 1591.1873803789738

--

e7

cso30:c:EntityBiologicalCompartment

cso30:i:CC_Cell

--

--

--

true true true true

csml-variable:Double

m7

0

false

infinite

0

unit false true false

--

Go back
506.0, 1140.0
48.892733564013845, 26.07612456747405

I-kappaB

--

e70

cso30:c:mRNA

cso30:i:CC_Nucleoplasm

--

p33

--

true true true true

csml-variable:Double

m70

0

false

infinite

0

unit false false false

--

Go back
981.0, 307.0
26.0, 60.0

ERK1

--

e71

cso30:c:Protein

cso30:i:CC_Cytosol

--

--

p34

true true true true

csml-variable:Double

m71

0

false

infinite

0

unit false false false

--

Go back
929.0, 391.0
26.0, 60.0

ERK1{active}

--

e72

cso30:c:Protein

cso30:i:CC_Cytosol

--

true true true true

csml-variable:Double

m72

0

false

infinite

0

unit false false false

--

Go back
1081.0, 347.0
26.0, 60.0

p38

--

e73

cso30:c:Protein

cso30:i:CC_Cytosol

--

--

p35

true true true true

csml-variable:Double

m73

0

false

infinite

0

unit false false false

--

Go back
1169.0, 459.0
26.0, 60.0

p38{active}

--

e74

cso30:c:Protein

cso30:i:CC_Cytosol

--

true true true true

csml-variable:Double

m74

0

false

infinite

0

unit false false false

--

Go back
1041.0, 1327.0
26.0, 60.0

JNK1

--

e75

cso30:c:Protein

cso30:i:CC_Cytosol

--

--

p29

true true true true

csml-variable:Double

m75

0

false

infinite

0

unit false false false

--

Go back
993.0, 1427.0
26.0, 60.0

JNK1{active}

--

e76

cso30:c:Protein

cso30:i:CC_Cytosol

--

true true true true

csml-variable:Double

m76

0

false

infinite

0

unit false false false

--

Go back
1113.0, 1359.0
26.0, 60.0

JNK2

--

e77

cso30:c:Protein

cso30:i:CC_Cytosol

--

--

p36

true true true true

csml-variable:Double

m77

0

false

infinite

0

unit false false false

--

Go back
1069.0, 1535.0
26.0, 60.0

JNK2{active}

--

e78

cso30:c:Protein

cso30:i:CC_Cytosol

--

true true true true

csml-variable:Double

m78

0

false

infinite

0

unit false false false

--

Go back
231.16813823286077, 80.26622815201415
1002.9925544790516, 1564.1768269162656

--

e8

cso30:c:EntityBiologicalCompartment

cso30:i:CC_Cell_WithoutCellWall_

--

--

--

true true true true

csml-variable:Double

m8

0

false

infinite

0

unit false true false

--

Go back
241.12887419703026, 108.34914783907738
998.4133432919417, 1543.6630397785082

--

e9

cso30:c:EntityBiologicalCompartment

cso30:i:CC_Cytoplasm

--

--

--

true true true true

csml-variable:Double

m9

0

false

infinite

0

unit false true false

--

Go back
1314.0, 221.0
23.0, 23.0

p1

p1

cso30:i:ME_Binding

cso30:i:CC_Extracellular

--

true true true true

--

and

mass

coefficient1:0.1
coefficient2:1.0
stoichiometry:c1 : 1
stoichiometry:c2 : 1
stoichiometry:c3 : 1

m6*m5*0.1

nodelay

--

true

0

false

PMID: 12106783 LPS is bound by CD14 and/or CD11/18 at the cell surface and facilitates an interaction with the TLR4-MD2 complex.

Go back
1444.0, 1187.0
27.0, 27.0

p10

p10

cso30:i:ME_Binding

cso30:i:CC_Extracellular

--

true true true true

--

and

mass

coefficient1:0.1
coefficient2:1.0
stoichiometry:c26 : 1
stoichiometry:c27 : 1
stoichiometry:c28 : 1

m25*m5*0.1

nodelay

--

true

0

false

PMID: 12106783 The CD14-independent cluster able to bind to LPS and represented by Hsp70, Hsp-90, CXCR4, and GDF5 may also contribute to LPS-induced TNF-¦Á production by as yet unknown mechanism(s).

Go back
716.0, 1296.0
23.0, 23.0

p11

p11

cso30:i:ME_GeneExpression

cso30:i:CC_Nucleoplasm

--

true true true true

--

and

mass

coefficient1:0.1
coefficient2:1.0
stoichiometry:c64 : 1
stoichiometry:c29 : 1

m17*0.1

nodelay

--

true

0

false

PMID: 12106783 Induction of a panel of inflammatory genes including COX-2, IL-12 p35, IL-12 p40, TNF-¦Á, IP-10, IRF-1, and ICSBP by low concentrations of LPS required both CD14 and TLR4.

Go back
885.0, 605.0
21.0, 21.0

p12

p12

cso30:i:ME_UnknownActivation

cso30:i:CC_Cytosol

--

true true true true

--

and

mass

coefficient1:0.1
coefficient2:1.0
stoichiometry:c31 : 1
stoichiometry:c54 : 1
stoichiometry:c32 : 1

m28*m42*0.1

nodelay

--

true

0

false

PMID: 12106783 E. coli LPS and the TLR2 agonists, lipoarabinomannan (LAM) and soluble tuberculosis factor (STF), rapidly activated mitogen activated (MAP) kinases, as well as NF-¦ÊB and AP-1 transactivation.

Go back
859.0, 811.0
25.0, 25.0

p13

p13

cso30:i:ME_UnknownActivation

cso30:i:CC_Cytosol

--

true true true true

--

and

mass

coefficient1:0.1
coefficient2:1.0
stoichiometry:c35 : 1
stoichiometry:c37 : 1
stoichiometry:c36 : 1

m32*m17*0.1

nodelay

--

true

0

false

PMID: 12106783 E. coli LPS and the TLR2 agonists, lipoarabinomannan (LAM) and soluble tuberculosis factor (STF), rapidly activated mitogen activated (MAP) kinases, as well as NF-¦ÊB and AP-1 transactivation.

Go back
624.0, 915.0
27.0, 27.0

p14

p14

cso30:i:ME_Translocation

cso30:i:CC_Cytosol

--

true true true true

--

and

mass

coefficient1:0.1
coefficient2:1.0
stoichiometry:c38 : 1
stoichiometry:c41 : 1
stoichiometry:c39 : 1

m31*m21*0.1

nodelay

--

true

0

false

PMID: 12106783, 9200483, 7535339, 9820516 CD18 in complex with CD11b or CD11c, activates signaling cascades leading to NF-¦ÊB translocation.

Go back
695.0, 1134.0
21.0, 21.0

p15

p15

cso30:i:ME_GeneExpression

cso30:i:CC_Nucleoplasm

--

true true true true

--

and

mass

coefficient1:0.1
coefficient2:1.0
stoichiometry:c43 : 1
stoichiometry:c42 : 1

m17*0.1

nodelay

--

true

0

false

PMID: 12106783 IFN-¦Ã, IL-12 p40, and MCP-5 were induced only by E. coli LPS. Induction of a panel of inflammatory genes including COX-2, IL-12 p35, IL-12 p40, TNF-¦Á, IP-10, IRF-1, and ICSBP by low concentrations of LPS required both CD14 and TLR4.

Go back
806.0, 1173.0
23.0, 23.0

p16

p16

cso30:i:ME_GeneExpression

cso30:i:CC_Nucleoplasm

--

true true true true

--

and

mass

coefficient1:0.1
coefficient2:1.0
stoichiometry:c45 : 1
stoichiometry:c44 : 1

m17*0.1

nodelay

--

true

0

false

PMID: 12106783 IFN-¦Ã, IL-12 p40, and MCP-5 were induced only by E. coli LPS.

Go back
787.0, 1294.0
21.0, 21.0

p17

p17

cso30:i:ME_GeneExpression

cso30:i:CC_Nucleoplasm

--

true true true true

--

and

mass

coefficient1:0.1
coefficient2:1.0
stoichiometry:c47 : 1
stoichiometry:c46 : 1

m17*0.1

nodelay

--

true

0

false

PMID: 12106783 IFN-¦Ã, IL-12 p40, and MCP-5 were induced only by E. coli LPS

Go back
345.0, 32.0
25.0, 25.0

p18

p18

cso30:i:ME_Binding

cso30:i:CC_Extracellular

--

true true true true

--

and

mass

coefficient1:0.1
coefficient2:1.0
stoichiometry:c48 : 1
stoichiometry:c49 : 1
stoichiometry:c50 : 1

m38*m39*0.1

nodelay

--

true

0

false

PMID: 12106783 E. coli LPS and the TLR2 agonists, lipoarabinomannan (LAM) and soluble tuberculosis factor (STF), rapidly activated mitogen activated (MAP) kinases, as well as NF-¦ÊB and AP-1 transactivation.

Go back
168.0, 31.0
27.0, 27.0

p19

p19

cso30:i:ME_Binding

cso30:i:CC_Extracellular

--

true true true true

--

and

mass

coefficient1:0.1
coefficient2:1.0
stoichiometry:c51 : 1
stoichiometry:c52 : 1
stoichiometry:c53 : 1

m41*m38*0.1

nodelay

--

true

0

false

PMID: 12106783 E. coli LPS and the TLR2 agonists, lipoarabinomannan (LAM) and soluble tuberculosis factor (STF), rapidly activated mitogen activated (MAP) kinases, as well as NF-¦ÊB and AP-1 transactivation.

Go back
1466.0, 129.0
23.0, 23.0

p2

p2

cso30:i:ME_Binding

cso30:i:CC_Extracellular

--

true true true true

--

and

mass

coefficient1:0.1
coefficient2:1.0
stoichiometry:c4 : 1
stoichiometry:c5 : 1
stoichiometry:c6 : 1

m5*m12*0.1

nodelay

--

true

0

false

PMID: 12106783, 1698311, 7534290, 7534291 soluble form (sCD14) or a glycosylphosphatidylinositol (GPI)-linked form (mCD14) on myeloid lineage cells bound enterobacterial LPS with high affinity.

Go back
465.0, 1340.0
25.0, 25.0

p20

p20

cso30:i:ME_GeneExpression

cso30:i:CC_Nucleoplasm

--

true true true true

--

and

mass

coefficient1:0.1
coefficient2:1.0
stoichiometry:c61 : 1
stoichiometry:c60 : 1

m42*0.1

nodelay

--

true

0

false

PMID: 12106783 Activation of DC through TLR2 also led to preferential induction of IL-8 and p19/IL-23.

Go back
481.0, 1264.0
25.0, 25.0

p21

p21

cso30:i:ME_GeneExpression

cso30:i:CC_Nucleoplasm

--

true true true true

--

and

mass

coefficient1:0.1
coefficient2:1.0
stoichiometry:c63 : 1
stoichiometry:c62 : 1

m42*0.1

nodelay

--

true

0

false

PMID: 12106783 Activation of DC through TLR2 also led to preferential induction of IL-8 and p19/IL-23.

Go back
799.0, 30.0
21.0, 21.0

p22

p22

cso30:i:ME_Binding

cso30:i:CC_Extracellular

--

true true true true

--

and

mass

coefficient1:0.1
coefficient2:1.0
stoichiometry:c65 : 1
stoichiometry:c66 : 1
stoichiometry:c67 : 1

m38*m5*0.1

nodelay

--

true

0

false

PMID: 12106783, 9751057 LPS binding ability of TLRs revealed that 3H-labeled LPS bound TLR2. However, the kinetics of association was slow and the Kd low (500?700 nM).

Go back
763.0, 1374.0
29.0, 29.0

p23

p23

cso30:i:ME_GeneExpression

cso30:i:CC_Nucleoplasm

--

true true true true

--

and

mass

coefficient1:0.1
coefficient2:1.0
stoichiometry:c70 : 1
stoichiometry:c69 : 1

m17*0.1

nodelay

--

true

0

false

PMID: 12106783 Induction of a panel of inflammatory genes including COX-2, IL-12 p35, IL-12 p40, TNF-¦Á, IP-10, IRF-1, and ICSBP by low concentrations of LPS required both CD14 and TLR4.

Go back
921.0, 1232.0
25.0, 25.0

p24

p24

cso30:i:ME_GeneExpression

cso30:i:CC_Nucleoplasm

--

true true true true

--

and

mass

coefficient1:0.1
coefficient2:1.0
stoichiometry:c71 : 1
stoichiometry:c72 : 1

m17*0.1

nodelay

--

true

0

false

PMID: 12106783 Induction of a panel of inflammatory genes including COX-2, IL-12 p35, IL-12 p40, TNF-¦Á, IP-10, IRF-1, and ICSBP by low concentrations of LPS required both CD14 and TLR4.

Go back
939.0, 1342.0
30.0, 30.0

p25

p25

cso30:i:ME_GeneExpression

cso30:i:CC_Nucleoplasm

--

true true true true

--

and

mass

coefficient1:0.1
coefficient2:1.0
stoichiometry:c74 : 1
stoichiometry:c73 : 1

m17*0.1

nodelay

--

true

0

false

PMID: 12106783 Induction of a panel of inflammatory genes including COX-2, IL-12 p35, IL-12 p40, TNF-¦Á, IP-10, IRF-1, and ICSBP by low concentrations of LPS required both CD14 and TLR4.

Go back
767.0, 1034.0
30.0, 30.0

p26

p26

cso30:i:ME_GeneExpression

cso30:i:CC_Nucleoplasm

--

true true true true

--

and

mass

coefficient1:0.1
coefficient2:1.0
stoichiometry:c76 : 1
stoichiometry:c75 : 1

m17*0.1

nodelay

--

true

0

false

PMID: 12106783 Induction of a panel of inflammatory genes including COX-2, IL-12 p35, IL-12 p40, TNF-¦Á, IP-10, IRF-1, and ICSBP by low concentrations of LPS required both CD14 and TLR4.

Go back
925.0, 1401.0
30.0, 30.0

p27

p27

cso30:i:ME_GeneExpression

cso30:i:CC_Nucleoplasm

--

true true true true

--

and

mass

coefficient1:0.1
coefficient2:1.0
stoichiometry:c78 : 1
stoichiometry:c77 : 1

m17*0.1

nodelay

--

true

0

false

PMID: 12106783 Induction of a panel of inflammatory genes including COX-2, IL-12 p35, IL-12 p40, TNF-¦Á, IP-10, IRF-1, and ICSBP by low concentrations of LPS required both CD14 and TLR4.

Go back
416.0, 515.0
27.0, 27.0

p28

p28

cso30:i:ME_UnknownActivation

cso30:i:CC_Cytosol

--

true true true true

--

and

mass

coefficient1:0.1
coefficient2:1.0
stoichiometry:c81 : 1
stoichiometry:c34 : 1
stoichiometry:c80 : 1

m17*m64*0.1

nodelay

--

true

0

false

PMID: 12106783 Stimulation of cells with LPS or other inflammatory stimuli leads to the activation of the I¦ÊB kinase complex (IKK).

Go back
1065.0, 1412.0
25.0, 25.0

p29

p29

cso30:i:ME_UnknownActivation

cso30:i:CC_Cytosol

--

true true true true

--

and

mass

coefficient1:0.1
coefficient2:1.0
stoichiometry:c100 : 1
stoichiometry:c102 : 1
stoichiometry:c101 : 1

m75*m17*0.1

nodelay

--

true

0

false

PMID: 12106783 In addition to NF-¦ÊB, LPS also activates MAP kinases, including JNK-1/2, ERK-1/2, and p38, in macrophages.

Go back
1388.0, 455.0
27.0, 27.0

p3

p3

cso30:i:ME_Binding

cso30:i:CC_Extracellular

--

true true true true

--

and

mass

coefficient1:0.1
coefficient2:1.0
stoichiometry:c7 : 1
stoichiometry:c8 : 1
stoichiometry:c9 : 1

m14*m15*0.1

nodelay

--

true

0

false

PMID: 12106783 LPS is bound by CD14 and/or CD11/18 at the cell surface and facilitates an interaction with the TLR4-MD2 complex.

Go back
411.0, 662.0
25.0, 25.0

p30

p30

cso30:i:ME_Phosphorylation

cso30:i:CC_Cytosol

--

true true true true

--

and

mass

coefficient1:0.1
coefficient2:1.0
stoichiometry:c82 : 1
stoichiometry:c84 : 1
stoichiometry:c83 : 1

m66*m65*0.1

nodelay

--

true

0

false

PMID: 12106783 Stimulation of cells with LPS or other inflammatory stimuli leads to the activation of the I¦ÊB kinase complex (IKK), which phosphorylates I¦ÊB on two N-terminal serine residues.

Go back
473.0, 720.0
25.0, 25.0

p31

p31

cso30:i:ME_Ubiquitination

cso30:i:CC_Cytosol

--

true true true true

--

and

mass

coefficient1:0.1
coefficient2:1.0
stoichiometry:c85 : 1
stoichiometry:c86 : 1

m67*0.1

nodelay

--

true

0

false

PMID: 12106783 Phosphorylated I¦ÊB becomes a substrate for ubiquitin ligase and finally undergoes degradation by the 26S proteasome.

Go back
439.0, 870.0
30.0, 30.0

p32

p32

cso30:i:ME_ProteasomeDegradation

cso30:i:CC_Cytosol

--

true true true true

--

and

mass

coefficient1:0.1
coefficient2:1.0
stoichiometry:c87 : 1
stoichiometry:c88 : 1
stoichiometry:c89 : 1

m68*0.1

nodelay

--

true

0

false

PMID: 12106783 Phosphorylated I¦ÊB becomes a substrate for ubiquitin ligase and finally undergoes degradation by the 26S proteasome.

Go back
563.0, 1082.0
29.0, 29.0

p33

p33

cso30:i:ME_GeneExpression

cso30:i:CC_Nucleoplasm

--

true true true true

--

and

mass

coefficient1:0.1
coefficient2:1.0
stoichiometry:c90 : 1
stoichiometry:c91 : 1

m34*0.1

nodelay

--

true

0

false

PMID: 12106783 Released NF-¦ÊB then moves to the nucleus, where it activates the transcription of many ¦ÊB-dependent genes, including TNF-¦Á and I¦ÊB¦Á.

Go back
985.0, 408.0
25.0, 25.0

p34

p34

cso30:i:ME_UnknownActivation

cso30:i:CC_Cytosol

--

true true true true

--

and

mass

coefficient1:0.1
coefficient2:1.0
stoichiometry:c92 : 1
stoichiometry:c94 : 1
stoichiometry:c93 : 1

m71*m17*0.1

nodelay

--

true

0

false

PMID: 12106783 In addition to NF-¦ÊB, LPS also activates MAP kinases, including JNK-1/2, ERK-1/2, and p38, in macrophages.

Go back
1082.0, 477.0
23.0, 23.0

p35

p35

cso30:i:ME_UnknownActivation

cso30:i:CC_Cytosol

--

true true true true

--

and

mass

coefficient1:0.1
coefficient2:1.0
stoichiometry:c55 : 1
stoichiometry:c96 : 1
stoichiometry:c95 : 1

m73*m17*0.1

nodelay

--

true

0

false

PMID: 12106783 In addition to NF-¦ÊB, LPS also activates MAP kinases, including JNK-1/2, ERK-1/2, and p38, in macrophages.

Go back
1148.0, 1447.0
27.0, 27.0

p36

p36

cso30:i:ME_UnknownActivation

cso30:i:CC_Cytosol

--

true true true true

--

and

mass

coefficient1:0.1
coefficient2:1.0
stoichiometry:c104 : 1
stoichiometry:c106 : 1
stoichiometry:c105 : 1

m77*m17*0.1

nodelay

--

true

0

false

PMID: 12106783 In addition to NF-¦ÊB, LPS also activates MAP kinases, including JNK-1/2, ERK-1/2, and p38, in macrophages.

Go back
921.0, 605.0
21.0, 21.0

p12

p37

cso30:i:ME_UnknownActivation

cso30:i:CC_Cytosol

--

true true true true

--

and

mass

coefficient1:0.1
coefficient2:1.0
stoichiometry:c108 : 1
stoichiometry:c19 : 1
stoichiometry:c109 : 1

m28*m17*0.1

nodelay

--

true

0

false

PMID: 12106783 In addition to NF-¦ÊB, LPS also activates MAP kinases, including JNK-1/2, ERK-1/2, and p38, in macrophages.

Go back
560.0, 1452.0
23.0, 23.0

p11

p38

cso30:i:ME_GeneExpression

cso30:i:CC_Nucleoplasm

--

true true true true

--

and

mass

coefficient1:0.1
coefficient2:1.0
stoichiometry:c111 : 1
stoichiometry:c110 : 1

m26*0.1

nodelay

--

true

0

false

PMID: 12106783 The CD14-independent cluster able to bind to LPS and represented by Hsp70, Hsp-90, CXCR4, and GDF5 may also contribute to LPS-induced TNF-¦Á production by as yet unknown mechanism(s). Induction of a panel of inflammatory genes including COX-2, IL-12 p35, IL-12 p40, TNF-¦Á, IP-10, IRF-1, and ICSBP by low concentrations of LPS required both CD14 and TLR4. Released NF-¦ÊB then moves to the nucleus, where it activates the transcription of many ¦ÊB-dependent genes, including TNF-¦Á and I¦ÊB¦Á. MAP kinases have been shown to be important for both TNF-¦Á and IL-1 synthesis

Go back
596.0, 1184.0
23.0, 23.0

p11

p39

cso30:i:ME_GeneExpression

cso30:i:CC_Nucleoplasm

--

true true true true

--

and

mass

coefficient1:0.1
coefficient2:1.0
stoichiometry:c112 : 1
stoichiometry:c30 : 1

m34*0.1

nodelay

--

true

0

false

PMID: 12106783 Released NF-¦ÊB then moves to the nucleus, where it activates the transcription of many ¦ÊB-dependent genes, including TNF-¦Á and I¦ÊB¦Á.

Go back
1388.0, 315.0
27.0, 27.0

p4

p4

cso30:i:ME_Binding

cso30:i:CC_Extracellular

--

true true true true

--

and

mass

coefficient1:0.1
coefficient2:1.0
stoichiometry:c10 : 1
stoichiometry:c11 : 1
stoichiometry:c12 : 1

m11*m16*0.1

nodelay

--

true

0

false

PMID: 12106783 LPS is bound by CD14 and/or CD11/18 at the cell surface and facilitates an interaction with the TLR4-MD2 complex.

Go back
580.0, 1392.0
23.0, 23.0

p11

p40

cso30:i:ME_GeneExpression

cso30:i:CC_Nucleoplasm

--

true true true true

--

and

mass

coefficient1:0.1
coefficient2:1.0
stoichiometry:c113 : 1
stoichiometry:c79 : 1

m78*0.1

nodelay

--

true

0

false

PMID: 12106783 Induction of a panel of inflammatory genes including COX-2, IL-12 p35, IL-12 p40, TNF-¦Á, IP-10, IRF-1, and ICSBP by low concentrations of LPS required both CD14 and TLR4. MAP kinases have been shown to be important for both TNF-¦Á and IL-1 synthesis

Go back
600.0, 1344.0
23.0, 23.0

p11

p41

cso30:i:ME_GeneExpression

cso30:i:CC_Nucleoplasm

--

true true true true

--

and

mass

coefficient1:0.1
coefficient2:1.0
stoichiometry:c114 : 1
stoichiometry:c107 : 1

m76*0.1

nodelay

--

true

0

false

PMID: 12106783 Induction of a panel of inflammatory genes including COX-2, IL-12 p35, IL-12 p40, TNF-¦Á, IP-10, IRF-1, and ICSBP by low concentrations of LPS required both CD14 and TLR4. MAP kinases have been shown to be important for both TNF-¦Á and IL-1 synthesis

Go back
628.0, 1208.0
23.0, 23.0

p11

p42

cso30:i:ME_GeneExpression

cso30:i:CC_Nucleoplasm

--

true true true true

--

and

mass

coefficient1:0.1
coefficient2:1.0
stoichiometry:c117 : 1
stoichiometry:c103 : 1

m72*0.1

nodelay

--

true

0

false

PMID: 12106783 Induction of a panel of inflammatory genes including COX-2, IL-12 p35, IL-12 p40, TNF-¦Á, IP-10, IRF-1, and ICSBP by low concentrations of LPS required both CD14 and TLR4. MAP kinases have been shown to be important for both TNF-¦Á and IL-1 synthesis

Go back
664.0, 1220.0
23.0, 23.0

p11

p43

cso30:i:ME_GeneExpression

cso30:i:CC_Nucleoplasm

--

true true true true

--

and

mass

coefficient1:0.1
coefficient2:1.0
stoichiometry:c116 : 1
stoichiometry:c115 : 1

m29*0.1

nodelay

--

true

0

false

PMID: 12106783 Induction of a panel of inflammatory genes including COX-2, IL-12 p35, IL-12 p40, TNF-¦Á, IP-10, IRF-1, and ICSBP by low concentrations of LPS required both CD14 and TLR4. MAP kinases have been shown to be important for both TNF-¦Á and IL-1 synthesis

Go back
660.0, 1252.0
23.0, 23.0

p11

p44

cso30:i:ME_GeneExpression

cso30:i:CC_Nucleoplasm

--

true true true true

--

and

mass

coefficient1:0.1
coefficient2:1.0
stoichiometry:c98 : 1
stoichiometry:c97 : 1

m74*0.1

nodelay

--

true

0

false

PMID: 12106783 Induction of a panel of inflammatory genes including COX-2, IL-12 p35, IL-12 p40, TNF-¦Á, IP-10, IRF-1, and ICSBP by low concentrations of LPS required both CD14 and TLR4. MAP kinases have been shown to be important for both TNF-¦Á and IL-1 synthesis

Go back
891.0, 771.0
25.0, 25.0

p13

p45

cso30:i:ME_UnknownActivation

cso30:i:CC_Cytosol

--

true true true true

--

and

mass

coefficient1:0.1
coefficient2:1.0
stoichiometry:c99 : 1
stoichiometry:c122 : 1
stoichiometry:c118 : 1

m32*m42*0.1

nodelay

--

true

0

false

PMID: 12106783 E. coli LPS and the TLR2 agonists, lipoarabinomannan (LAM) and soluble tuberculosis factor (STF), rapidly activated mitogen activated (MAP) kinases, as well as NF-¦ÊB and AP-1 transactivation.

Go back
919.0, 735.0
25.0, 25.0

p13

p46

cso30:i:ME_UnknownActivation

cso30:i:CC_Cytosol

--

true true true true

--

and

mass

coefficient1:0.1
coefficient2:1.0
stoichiometry:c119 : 1
stoichiometry:c121 : 1
stoichiometry:c120 : 1

m32*m40*0.1

nodelay

--

true

0

false

PMID: 12106783 E. coli LPS and the TLR2 agonists, lipoarabinomannan (LAM) and soluble tuberculosis factor (STF), rapidly activated mitogen activated (MAP) kinases, as well as NF-¦ÊB and AP-1 transactivation.

Go back
674.0, 890.0
27.0, 27.0

p14

p47

cso30:i:ME_Translocation

cso30:i:CC_Cytosol

--

true true true true

--

and

mass

coefficient1:0.1
coefficient2:1.0
stoichiometry:c58 : 1
stoichiometry:c123 : 1
stoichiometry:c59 : 1

m31*m19*0.1

nodelay

--

true

0

false

PMID: 12106783, 9200483, 7535339, 9820516 CD18 in complex with CD11b or CD11c, activates signaling cascades leading to NF-¦ÊB translocation.

Go back
656.0, 728.0
23.0, 23.0

p7

p48

cso30:i:ME_UnknownActivation

cso30:i:CC_Cytosol

--

true true true true

--

and

mass

coefficient1:0.1
coefficient2:1.0
stoichiometry:c40 : 1
stoichiometry:c127 : 1
stoichiometry:c124 : 1

m30*m40*0.1

nodelay

--

true

0

false

PMID: 12106783 E. coli LPS and the TLR2 agonists, lipoarabinomannan (LAM) and soluble tuberculosis factor (STF), rapidly activated mitogen activated (MAP) kinases, as well as NF-¦ÊB and AP-1 transactivation.

Go back
684.0, 752.0
23.0, 23.0

p7

p49

cso30:i:ME_UnknownActivation

cso30:i:CC_Cytosol

--

true true true true

--

and

mass

coefficient1:0.1
coefficient2:1.0
stoichiometry:c125 : 1
stoichiometry:c128 : 1
stoichiometry:c126 : 1

m30*m24*0.1

nodelay

--

true

0

false

PMID: 12106783 Nod 1 binds to 3H?LPS and activates NF-¦ÊB in a TLR4-independent fashion.

Go back
1325.0, 804.0
25.0, 25.0

p5

p5

cso30:i:ME_Binding

cso30:i:CC_Extracellular

--

true true true true

--

and

mass

coefficient1:0.1
coefficient2:1.0
stoichiometry:c13 : 1
stoichiometry:c14 : 1
stoichiometry:c15 : 1

m18*m5*0.1

nodelay

--

true

0

false

PMID: 12106783, 2462607 CD11b/CD18 (Mac-1) and CD11c/CD18, obligate heterodimers share a common molecule, CD18, which was shown to be necessary for LPS binding on the surface of cells expressing integrins.

Go back
1352.0, 983.0
27.0, 27.0

p6

p6

cso30:i:ME_Binding

cso30:i:CC_Extracellular

--

true true true true

--

and

mass

coefficient1:0.1
coefficient2:1.0
stoichiometry:c16 : 1
stoichiometry:c17 : 1
stoichiometry:c18 : 1

m5*m20*0.1

nodelay

--

true

0

false

PMID: 12106783, 2462607 CD11b/CD18 (Mac-1) and CD11c/CD18, obligate heterodimers share a common molecule, CD18, which was shown to be necessary for LPS binding on the surface of cells expressing integrins.

Go back
626.0, 709.0
23.0, 23.0

p7

p7

cso30:i:ME_UnknownActivation

cso30:i:CC_Cytosol

--

true true true true

--

and

mass

coefficient1:0.1
coefficient2:1.0
stoichiometry:c20 : 1
stoichiometry:c56 : 1
stoichiometry:c33 : 1

m30*m42*0.1

nodelay

--

true

0

false

PMID: 12106783 E. coli LPS and the TLR2 agonists, lipoarabinomannan (LAM) and soluble tuberculosis factor (STF), rapidly activated mitogen activated (MAP) kinases, as well as NF-¦ÊB and AP-1 transactivation.

Go back
1152.0, 255.0
27.0, 27.0

p8

p8

cso30:i:ME_Internalization

cso30:i:CC_Extracellular

--

true true true true

--

and

mass

coefficient1:0.1
coefficient2:1.0
stoichiometry:c21 : 1
stoichiometry:c22 : 1

m5*0.1

nodelay

--

true

0

false

PMID: 12106783 LPS can also be internalized through an as yet unknown mechanism.

Go back
700.0, 255.0
27.0, 27.0

p9

p9

cso30:i:ME_Binding

cso30:i:CC_Cytosol

--

true true true true

--

and

mass

coefficient1:0.1
coefficient2:1.0
stoichiometry:c23 : 1
stoichiometry:c24 : 1
stoichiometry:c25 : 1

m23*m22*0.1

nodelay

--

true

0

false

PMID: 12106783 LPS can also be internalized through an as yet unknown mechanism, and may bind to intracellular Nod1.

Go back
1277.0, 227.0

c1

c1

cso30:c:InputProcess

--

true true true true

cso30:c:InputProcess

threshold

--

0

1,

--

Go back
1262.0, 330.3805211953236

c10

c10

cso30:c:InputProcess

--

true true true true

cso30:c:InputProcess

threshold

--

0

1,

--

Go back
1064.0, 1387.0

c100

c100

cso30:c:InputProcess

--

true true true true

cso30:c:InputProcess

threshold

--

0

1,

--

Go back
1026.336560450026, 1431.0

c101

c101

cso30:c:OutputProcess

--

true true true true

cso30:c:OutputProcess

threshold

--

0

1,

--

Go back
1082.8797872632472, 746.0

c102

c102

cso30:c:InputAssociation

--

true true true true

cso30:c:InputAssociation

threshold

--

0

1,

--

Go back
610.0977344098768, 1226.0

c103

c103

cso30:c:OutputProcess

--

true true true true

cso30:c:OutputProcess

threshold

--

0

1,

--

Go back
1139.0, 1415.0

c104

c104

cso30:c:InputProcess

--

true true true true

cso30:c:InputProcess

threshold

--

0

1,

--

Go back
1099.8818240754583, 1474.0

c105

c105

cso30:c:OutputProcess

--

true true true true

cso30:c:OutputProcess

threshold

--

0

1,

--

Go back
1164.9294684872323, 746.0

c106

c106

cso30:c:InputAssociation

--

true true true true

cso30:c:InputAssociation

threshold

--

0

1,

--

Go back
582.7980333239857, 1276.4947321178188

c107

c107

cso30:c:OutputProcess

--

true true true true

cso30:c:OutputProcess

threshold

--

0

1,

--

Go back
890.0, 526.0

c108

c108

cso30:c:InputProcess

--

true true true true

cso30:c:InputProcess

threshold

--

0

1,

--

Go back
909.853612525057, 626.0

c109

c109

cso30:c:OutputProcess

--

true true true true

cso30:c:OutputProcess

threshold

--

0

1,

--

Go back
1268.0, 349.05800244886257

c11

c11

cso30:c:InputProcess

--

true true true true

cso30:c:InputProcess

threshold

--

0

1,

--

Go back
572.0, 1276.9995222739753

c110

c110

cso30:c:OutputProcess

--

true true true true

cso30:c:OutputProcess

threshold

--

0

1,

--

Go back
590.8727028887965, 1345.0

c111

c111

cso30:c:InputAssociation

--

true true true true

cso30:c:InputAssociation

threshold

--

0

1,

--

Go back
612.6906623402203, 1073.0

c112

c112

cso30:c:InputAssociation

--

true true true true

cso30:c:InputAssociation

threshold

--

0

1,

--

Go back
610.6008066108304, 1410.49554380141

c113

c113

cso30:c:InputAssociation

--

true true true true

cso30:c:InputAssociation

threshold

--

0

1,

--

Go back
630.7486645491788, 1360.9895219788432

c114

c114

cso30:c:InputAssociation

--

true true true true

cso30:c:InputAssociation

threshold

--

0

1,

--

Go back
610.8242914870974, 1234.0

c115

c115

cso30:c:OutputProcess

--

true true true true

cso30:c:OutputProcess

threshold

--

0

1,

--

Go back
684.0942315626645, 736.0

c116

c116

cso30:c:InputAssociation

--

true true true true

cso30:c:InputAssociation

threshold

--

0

1,

--

Go back
647.8273968003826, 451.0

c117

c117

cso30:c:InputAssociation

--

true true true true

cso30:c:InputAssociation

threshold

--

0

1,

--

Go back
916.0, 753.1597095385993

c118

c118

cso30:c:OutputProcess

--

true true true true

cso30:c:OutputProcess

threshold

--

0

1,

--

Go back
805.0, 752.7788826941525

c119

c119

cso30:c:InputProcess

--

true true true true

cso30:c:InputProcess

threshold

--

0

1,

--

Go back
1265.9559060753172, 342.0

c12

c12

cso30:c:OutputProcess

--

true true true true

cso30:c:OutputProcess

threshold

--

0

1,

--

Go back
944.0, 745.3035786553762

c120

c120

cso30:c:OutputProcess

--

true true true true

cso30:c:OutputProcess

threshold

--

0

1,

--

Go back
711.0, 140.0

c121

c121

cso30:c:InputAssociation

--

true true true true

cso30:c:InputAssociation

threshold

--

0

1,

--

Go back
344.0, 126.0

c122

c122

cso30:c:InputAssociation

--

true true true true

cso30:c:InputAssociation

threshold

--

0

1,

--

Go back
708.9996413234803, 904.0757541791996

c123

c123

cso30:c:InputAssociation

--

true true true true

cso30:c:InputAssociation

threshold

--

0

1,

--

Go back
646.7785148465888, 751.0

c124

c124

cso30:c:OutputProcess

--

true true true true

cso30:c:OutputProcess

threshold

--

0

1,

--

Go back
588.0, 730.0

c125

c125

cso30:c:InputProcess

--

true true true true

cso30:c:InputProcess

threshold

--

0

1,

--

Go back
660.6568542494924, 775.0

c126

c126

cso30:c:OutputProcess

--

true true true true

cso30:c:OutputProcess

threshold

--

0

1,

--

Go back
669.3669602752672, 140.0

c127

c127

cso30:c:InputAssociation

--

true true true true

cso30:c:InputAssociation

threshold

--

0

1,

--

Go back
697.4260611433292, 377.0

c128

c128

cso30:c:InputAssociation

--

true true true true

cso30:c:InputAssociation

threshold

--

0

1,

--

Go back
1264.0, 817.0

c13

c13

cso30:c:InputProcess

--

true true true true

cso30:c:InputProcess

threshold

--

0

1,

--

Go back
1343.046313343359, 290.0

c14

c14

cso30:c:InputProcess

--

true true true true

cso30:c:InputProcess

threshold

--

0

1,

--

Go back
1277.5047326640743, 829.0

c15

c15

cso30:c:OutputProcess

--

true true true true

cso30:c:OutputProcess

threshold

--

0

1,

--

Go back
1369.2652576941896, 290.0

c16

c16

cso30:c:InputProcess

--

true true true true

cso30:c:InputProcess

threshold

--

0

1,

--

Go back
1281.0, 997.0

c17

c17

cso30:c:InputProcess

--

true true true true

cso30:c:InputProcess

threshold

--

0

1,

--

Go back
1277.9463531699773, 1010.0

c18

c18

cso30:c:OutputProcess

--

true true true true

cso30:c:OutputProcess

threshold

--

0

1,

--

Go back
949.6508125684107, 621.3377482847922

c19

c19

cso30:c:InputAssociation

--

true true true true

cso30:c:InputAssociation

threshold

--

0

1,

--

Go back
1344.7939115054407, 236.80414618181499

c2

c2

cso30:c:InputProcess

--

true true true true

cso30:c:InputProcess

threshold

--

0

1,

--

Go back
588.0, 721.0

c20

c20

cso30:c:InputProcess

--

true true true true

cso30:c:InputProcess

threshold

--

0

1,

--

Go back
1187.0, 269.0

c21

c21

cso30:c:InputProcess

--

true true true true

cso30:c:InputProcess

threshold

--

0

1,

--

Go back
856.0, 269.0

c22

c22

cso30:c:OutputProcess

--

true true true true

cso30:c:OutputProcess

threshold

--

0

1,

--

Go back
647.0, 269.0

c23

c23

cso30:c:InputProcess

--

true true true true

cso30:c:InputProcess

threshold

--

0

1,

--

Go back
735.0, 269.0

c24

c24

cso30:c:InputProcess

--

true true true true

cso30:c:InputProcess

threshold

--

0

1,

--

Go back
715.0, 282.0

c25

c25

cso30:c:OutputProcess

--

true true true true

cso30:c:OutputProcess

threshold

--

0

1,

--

Go back
1282.0, 1201.0

c26

c26

cso30:c:InputProcess

--

true true true true

cso30:c:InputProcess

threshold

--

0

1,

--

Go back
1458.2050608063405, 290.0

c27

c27

cso30:c:InputProcess

--

true true true true

cso30:c:InputProcess

threshold

--

0

1,

--

Go back
1284.594652807391, 1211.0

c28

c28

cso30:c:OutputProcess

--

true true true true

cso30:c:OutputProcess

threshold

--

0

1,

--

Go back
610.5202885905017, 1265.7286002850492

c29

c29

cso30:c:OutputProcess

--

true true true true

cso30:c:OutputProcess

threshold

--

0

1,

--

Go back
1266.1758195855607, 244.0

c3

c3

cso30:c:OutputProcess

--

true true true true

cso30:c:OutputProcess

threshold

--

0

1,

--

Go back
587.017084139092, 1207.0

c30

c30

cso30:c:OutputProcess

--

true true true true

cso30:c:OutputProcess

threshold

--

0

1,

--

Go back
882.0, 529.0

c31

c31

cso30:c:InputProcess

--

true true true true

cso30:c:InputProcess

threshold

--

0

1,

--

Go back
896.0, 626.0

c32

c32

cso30:c:OutputProcess

--

true true true true

cso30:c:OutputProcess

threshold

--

0

1,

--

Go back
638.0, 732.0

c33

c33

cso30:c:OutputProcess

--

true true true true

cso30:c:OutputProcess

threshold

--

0

1,

--

Go back
360.0, 480.0

c34

c34

cso30:c:InputProcess

--

true true true true

cso30:c:InputProcess

threshold

--

0

1,

--

Go back
805.0, 796.0

c35

c35

cso30:c:InputProcess

--

true true true true

cso30:c:InputProcess

threshold

--

0

1,

--

Go back
884.0, 758.3458335601264

c36

c36

cso30:c:OutputProcess

--

true true true true

cso30:c:OutputProcess

threshold

--

0

1,

--

Go back
891.6795026407199, 719.0

c37

c37

cso30:c:InputAssociation

--

true true true true

cso30:c:InputAssociation

threshold

--

0

1,

--

Go back
638.0, 838.0

c38

c38

cso30:c:InputProcess

--

true true true true

cso30:c:InputProcess

threshold

--

0

1,

--

Go back
638.0, 942.0

c39

c39

cso30:c:OutputProcess

--

true true true true

cso30:c:OutputProcess

threshold

--

0

1,

--

Go back
1478.2498780190217, 159.99609660869663

c4

c4

cso30:c:InputProcess

--

true true true true

cso30:c:InputProcess

threshold

--

0

1,

--

Go back
588.0, 726.0

c40

c40

cso30:c:InputProcess

--

true true true true

cso30:c:InputProcess

threshold

--

0

1,

--

Go back
658.7031582490886, 935.1590166718898

c41

c41

cso30:c:InputAssociation

--

true true true true

cso30:c:InputAssociation

threshold

--

0

1,

--

Go back
666.0, 1145.0

c42

c42

cso30:c:OutputProcess

--

true true true true

cso30:c:OutputProcess

threshold

--

0

1,

--

Go back
722.2659343155875, 729.0

c43

c43

cso30:c:InputAssociation

--

true true true true

cso30:c:InputAssociation

threshold

--

0

1,

--

Go back
784.3000745961197, 1191.0

c44

c44

cso30:c:OutputProcess

--

true true true true

cso30:c:OutputProcess

threshold

--

0

1,

--

Go back
834.402135762231, 735.0

c45

c45

cso30:c:InputAssociation

--

true true true true

cso30:c:InputAssociation

threshold

--

0

1,

--

Go back
780.9115249081194, 1315.0

c46

c46

cso30:c:OutputProcess

--

true true true true

cso30:c:OutputProcess

threshold

--

0

1,

--

Go back
810.8566242097829, 739.0

c47

c47

cso30:c:InputAssociation

--

true true true true

cso30:c:InputAssociation

threshold

--

0

1,

--

Go back
377.4627782401814, 52.88217642379419

c48

c48

cso30:c:InputProcess

--

true true true true

cso30:c:InputProcess

threshold

--

0

1,

--

Go back
377.99811031059136, 45.173871963273726

c49

c49

cso30:c:InputProcess

--

true true true true

cso30:c:InputProcess

threshold

--

0

1,

--

Go back
1417.0, 138.0

c5

c5

cso30:c:InputProcess

--

true true true true

cso30:c:InputProcess

threshold

--

0

1,

--

Go back
370.0, 47.0

c50

c50

cso30:c:OutputProcess

--

true true true true

cso30:c:OutputProcess

threshold

--

0

1,

--

Go back
168.0, 64.7839864320407

c51

c51

cso30:c:InputProcess

--

true true true true

cso30:c:InputProcess

threshold

--

0

1,

--

Go back
202.85394324732545, 48.5217015041693

c52

c52

cso30:c:InputProcess

--

true true true true

cso30:c:InputProcess

threshold

--

0

1,

--

Go back
195.0, 50.0

c53

c53

cso30:c:OutputProcess

--

true true true true

cso30:c:OutputProcess

threshold

--

0

1,

--

Go back
344.0, 121.0

c54

c54

cso30:c:InputAssociation

--

true true true true

cso30:c:InputAssociation

threshold

--

0

1,

--

Go back
1094.0, 407.0

c55

c55

cso30:c:InputProcess

--

true true true true

cso30:c:InputProcess

threshold

--

0

1,

--

Go back
343.0, 139.0

c56

c56

cso30:c:InputAssociation

--

true true true true

cso30:c:InputAssociation

threshold

--

0

1,

--

Go back
648.0, 838.0

c58

c58

cso30:c:InputProcess

--

true true true true

cso30:c:InputProcess

threshold

--

0

1,

--

Go back
645.5114383342795, 917.0

c59

c59

cso30:c:OutputProcess

--

true true true true

cso30:c:OutputProcess

threshold

--

0

1,

--

Go back
1489.0, 141.0

c6

c6

cso30:c:OutputProcess

--

true true true true

cso30:c:OutputProcess

threshold

--

0

1,

--

Go back
489.0, 1365.0

c60

c60

cso30:c:OutputProcess

--

true true true true

cso30:c:OutputProcess

threshold

--

0

1,

--

Go back
330.0, 139.0

c61

c61

cso30:c:InputAssociation

--

true true true true

cso30:c:InputAssociation

threshold

--

0

1,

--

Go back
503.0, 1227.70398467766

c62

c62

cso30:c:OutputProcess

--

true true true true

cso30:c:OutputProcess

threshold

--

0

1,

--

Go back
331.0, 139.0

c63

c63

cso30:c:InputAssociation

--

true true true true

cso30:c:InputAssociation

threshold

--

0

1,

--

Go back
744.2741179025875, 736.0

c64

c64

cso30:c:InputAssociation

--

true true true true

cso30:c:InputAssociation

threshold

--

0

1,

--

Go back
554.0, 46.0219472330829

c65

c65

cso30:c:InputProcess

--

true true true true

cso30:c:InputProcess

threshold

--

0

1,

--

Go back
827.5760271591145, 46.569788412371636

c66

c66

cso30:c:InputProcess

--

true true true true

cso30:c:InputProcess

threshold

--

0

1,

--

Go back
817.0, 51.0

c67

c67

cso30:c:OutputProcess

--

true true true true

cso30:c:OutputProcess

threshold

--

0

1,

--

Go back
715.0, 1389.0

c69

c69

cso30:c:OutputProcess

--

true true true true

cso30:c:OutputProcess

threshold

--

0

1,

--

Go back
1266.0, 469.0

c7

c7

cso30:c:InputProcess

--

true true true true

cso30:c:InputProcess

threshold

--

0

1,

--

Go back
792.5849136138712, 742.0

c70

c70

cso30:c:InputAssociation

--

true true true true

cso30:c:InputAssociation

threshold

--

0

1,

--

Go back
946.0784191224138, 746.0

c71

c71

cso30:c:InputAssociation

--

true true true true

cso30:c:InputAssociation

threshold

--

0

1,

--

Go back
925.7620869714772, 1257.0

c72

c72

cso30:c:OutputProcess

--

true true true true

cso30:c:OutputProcess

threshold

--

0

1,

--

Go back
894.9940893970505, 1357.0

c73

c73

cso30:c:OutputProcess

--

true true true true

cso30:c:OutputProcess

threshold

--

0

1,

--

Go back
964.3416342528462, 746.0

c74

c74

cso30:c:InputAssociation

--

true true true true

cso30:c:InputAssociation

threshold

--

0

1,

--

Go back
745.4, 1060.0

c75

c75

cso30:c:OutputProcess

--

true true true true

cso30:c:OutputProcess

threshold

--

0

1,

--

Go back
803.497678306137, 727.0

c76

c76

cso30:c:InputAssociation

--

true true true true

cso30:c:InputAssociation

threshold

--

0

1,

--

Go back
903.5629838530102, 1422.0

c77

c77

cso30:c:OutputProcess

--

true true true true

cso30:c:OutputProcess

threshold

--

0

1,

--

Go back
950.2200353706148, 746.0

c78

c78

cso30:c:InputAssociation

--

true true true true

cso30:c:InputAssociation

threshold

--

0

1,

--

Go back
576.9684350024883, 1276.9411670204042

c79

c79

cso30:c:OutputProcess

--

true true true true

cso30:c:OutputProcess

threshold

--

0

1,

--

Go back
1326.0, 478.292693779412

c8

c8

cso30:c:InputProcess

--

true true true true

cso30:c:InputProcess

threshold

--

0

1,

--

Go back
371.2636750760036, 535.0

c80

c80

cso30:c:OutputProcess

--

true true true true

cso30:c:OutputProcess

threshold

--

0

1,

--

Go back
450.8050373095282, 533.7553895854975

c81

c81

cso30:c:InputAssociation

--

true true true true

cso30:c:InputAssociation

threshold

--

0

1,

--

Go back
347.0, 675.1249847440043

c82

c82

cso30:c:InputProcess

--

true true true true

cso30:c:InputProcess

threshold

--

0

1,

--

Go back
436.0, 650.7055898093053

c83

c83

cso30:c:OutputProcess

--

true true true true

cso30:c:OutputProcess

threshold

--

0

1,

--

Go back
364.0, 597.0

c84

c84

cso30:c:InputAssociation

--

true true true true

cso30:c:InputAssociation

threshold

--

0

1,

--

Go back
495.3289916300825, 661.0

c85

c85

cso30:c:InputProcess

--

true true true true

cso30:c:InputProcess

threshold

--

0

1,

--

Go back
469.00564086991375, 745.0

c86

c86

cso30:c:OutputProcess

--

true true true true

cso30:c:OutputProcess

threshold

--

0

1,

--

Go back
455.3134845335628, 819.0

c87

c87

cso30:c:InputProcess

--

true true true true

cso30:c:InputProcess

threshold

--

0

1,

--

Go back
454.0, 900.0

c88

c88

cso30:c:OutputProcess

--

true true true true

cso30:c:OutputProcess

threshold

--

0

1,

--

Go back
469.0, 832.6570009553913

c89

c89

cso30:c:OutputProcess

--

true true true true

cso30:c:OutputProcess

threshold

--

0

1,

--

Go back
1273.7999954687552, 482.0

c9

c9

cso30:c:OutputProcess

--

true true true true

cso30:c:OutputProcess

threshold

--

0

1,

--

Go back
598.7008847747089, 1073.0

c90

c90

cso30:c:InputAssociation

--

true true true true

cso30:c:InputAssociation

threshold

--

0

1,

--

Go back
546.2235169765557, 1111.0

c91

c91

cso30:c:OutputProcess

--

true true true true

cso30:c:OutputProcess

threshold

--

0

1,

--

Go back
995.0, 367.0

c92

c92

cso30:c:InputProcess

--

true true true true

cso30:c:InputProcess

threshold

--

0

1,

--

Go back
963.0, 421.0

c93

c93

cso30:c:OutputProcess

--

true true true true

cso30:c:OutputProcess

threshold

--

0

1,

--

Go back
1013.2295722446968, 439.05405435534715

c94

c94

cso30:c:InputAssociation

--

true true true true

cso30:c:InputAssociation

threshold

--

0

1,

--

Go back
1105.0, 489.0

c95

c95

cso30:c:OutputProcess

--

true true true true

cso30:c:OutputProcess

threshold

--

0

1,

--

Go back
1106.5685159055888, 506.5672416142839

c96

c96

cso30:c:InputAssociation

--

true true true true

cso30:c:InputAssociation

threshold

--

0

1,

--

Go back
610.9403476422132, 1256.9751304122017

c97

c97

cso30:c:OutputProcess

--

true true true true

cso30:c:OutputProcess

threshold

--

0

1,

--

Go back
684.3980882611821, 509.0

c98

c98

cso30:c:InputAssociation

--

true true true true

cso30:c:InputAssociation

threshold

--

0

1,

--

Go back
805.0, 784.0

c99

c99

cso30:c:InputProcess

--

true true true true

cso30:c:InputProcess

threshold

--

0

1,

--

Go back