Original Literature | Model OverView |
---|---|
Publication
Title
The interferon in TLR signaling: more than just antiviral.
Affiliation
Centre for Functional Genomics and Human Disease, Monash Institute ofReproduction and Development, Monash University, Clayton, Victoria 3168,Australia. paul.hertzog@med.monash.edu.au
Abstract
The Toll-like receptor (TLR) system is responsible for the recognition ofinfectious agents leading to initiation of the primary innate, and lateradaptive, immune response. Genetic technologies have enabled the discovery ofnew factors involved in these systems, their genetic manipulation and the globalanalyses of their effects on gene expression. Furthermore, this increasedunderstanding has resulted in the need to reassess our preconceptions about thefunctions of well-known molecules. For example, type I interferons (IFNs), whichwere discovered as antiviral proteins, are now known to be produced in responseto TLR activation by many pathogens, including bacteria. Should we be surprised?Has the inflammatory response unexpectedly highjacked the body's antiviralsystem? Or are we too easily blinkered by preconceptions from how a compound wasdiscovered?
PMID
14552837
|
Entity
IRF-3
--
MO000007694
cso30:c:Protein
cso30:i:CC_CellComponent
--
csml-variable:Double
m977
10
infinite
0
InterPro | IPR008984 |
TRANSPATH | MO000007694 |
--
IFNbeta
--
MO000016660
cso30:c:Protein
cso30:i:CC_CellComponent
--
csml-variable:Double
m1636
10
infinite
0
InterPro | IPR000471 |
TRANSPATH | MO000016660 |
--
SOCS/CIS family
--
MO000017115
cso30:c:Protein
cso30:i:CC_CellComponent
--
csml-variable:Double
m2002
10
infinite
0
TRANSPATH | MO000017115 |
--
--
e1
cso30:c:EntityBiologicalCompartment
cso30:i:CC_PlasmaMembrane
--
--
--
csml-variable:Double
m1
0
infinite
0
--
--
e10
cso30:c:EntityBiologicalCompartment
cso30:i:CC_Cytosol
--
--
--
csml-variable:Double
m10
0
infinite
0
--
NO
--
e11
cso30:c:SmallMolecule
cso30:i:CC_Cytosol
--
--
csml-variable:Double
m11
0
infinite
0
--
LPS: TLR4: MyD88: MAL
--
e12
cso30:c:Complex
cso30:i:CC_PlasmaMembrane_InternalSideOfPlasmaMembrane_
--
csml-variable:Double
m12
0
infinite
0
--
LPS: TLR4: MyD88: MAL: IRAK
--
e13
cso30:c:Complex
cso30:i:CC_PlasmaMembrane_IntegralToPlasmaMembrane_
--
csml-variable:Double
m13
0
infinite
0
--
IRAK {activated} : TRAF6
--
e14
cso30:c:Complex
cso30:i:CC_PlasmaMembrane_IntegralToPlasmaMembrane_
--
csml-variable:Double
m14
0
infinite
0
--
LPS: TLR4: MyD88: MAL: IRAK {activated}
--
e16
cso30:c:Complex
cso30:i:CC_PlasmaMembrane_IntegralToPlasmaMembrane_
--
csml-variable:Double
m16
0
infinite
0
--
IRAK {activated} : TRAF6 {activated}
--
e18
cso30:c:Complex
cso30:i:CC_PlasmaMembrane_IntegralToPlasmaMembrane_
--
csml-variable:Double
m18
0
infinite
0
--
--
e2
cso30:c:EntityBiologicalCompartment
cso30:i:CC_PlasmaMembrane_ExternalSideOfPlasmaMembrane_
--
--
--
csml-variable:Double
m2
0
infinite
0
--
NF-kappaB {activated}
--
e20
cso30:c:Protein
cso30:i:CC_CellComponent
--
csml-variable:Double
m21
10
infinite
0
TRANSPATH | MO000000058 |
--
IkappaB {activated}
--
e21
cso30:c:Protein
cso30:i:CC_CellComponent
--
csml-variable:Double
m22
10
infinite
0
TRANSPATH | MO000000215 |
--
dsRNA: TLR3
--
e22
cso30:c:Complex
cso30:i:CC_PlasmaMembrane_IntegralToPlasmaMembrane_
--
csml-variable:Double
m19
0
infinite
0
--
dsRNA: TLR3: TRIF
--
e23
cso30:c:Complex
cso30:i:CC_PlasmaMembrane_IntegralToPlasmaMembrane_
--
csml-variable:Double
m23
0
infinite
0
--
IRF-3 {activated}
--
e24
cso30:c:Protein
cso30:i:CC_CellComponent
--
csml-variable:Double
m24
10
infinite
0
InterPro | IPR008984 |
TRANSPATH | MO000007694 |
--
csml-variable:Double
m25
0
infinite
0
--
IFNalpha-4
--
e26
cso30:c:Protein
cso30:i:CC_Cytosol
--
--
csml-variable:Double
m26
0
infinite
0
--
IFNbeta: IFNAR1
--
e27
cso30:c:Complex
cso30:i:CC_PlasmaMembrane_IntegralToPlasmaMembrane_
--
csml-variable:Double
m27
0
infinite
0
--
IFNbeta: IFNAR2
--
e28
cso30:c:Complex
cso30:i:CC_PlasmaMembrane_IntegralToPlasmaMembrane_
--
csml-variable:Double
m28
0
infinite
0
--
STAT1 {activated}
--
e29
cso30:c:Protein
cso30:i:CC_CellComponent
--
csml-variable:Double
m29
10
infinite
0
InterPro | IPR008967 |
TRANSPATH | MO000013119 |
--
--
e3
cso30:c:EntityBiologicalCompartment
cso30:i:CC_PlasmaMembrane_IntegralToPlasmaMembrane_
--
--
--
csml-variable:Double
m3
0
infinite
0
--
csml-variable:Double
m30
10
infinite
0
Ensembl | ENSG00000147877 |
HGNC | IFNA7 |
OMIM | 147567 |
Proteome | HumanPSD/IFNA7 |
RefSeq | NM_021057 |
TRANSFAC | G000306 |
Unigene | Hs.282274 |
--
IRF-7 {activated}
--
e31
cso30:c:Protein
cso30:i:CC_CellComponent
--
csml-variable:Double
m31
10
infinite
0
TRANSPATH | MO000007702 |
--
csml-variable:Double
m32
10
infinite
0
--
M-CSF: M-CSFR
--
e33
cso30:c:Complex
cso30:i:CC_PlasmaMembrane_IntegralToPlasmaMembrane_
--
csml-variable:Double
m33
0
infinite
0
--
IL-12: IL-12R
--
e35
cso30:c:Complex
cso30:i:CC_PlasmaMembrane_IntegralToPlasmaMembrane_
--
csml-variable:Double
m35
0
infinite
0
--
TLR ligand
--
e36
cso30:c:Protein
cso30:i:CC_Extracellular
--
--
csml-variable:Double
m36
0
infinite
0
--
TLR ligand : TLR
--
e37
cso30:c:Complex
cso30:i:CC_PlasmaMembrane_ExternalSideOfPlasmaMembrane_
--
csml-variable:Double
m37
0
infinite
0
--
IRAK: SOCS
--
e38
cso30:c:Complex
cso30:i:CC_Cytosol
--
--
csml-variable:Double
m38
0
infinite
0
--
--
e4
cso30:c:EntityBiologicalCompartment
cso30:i:CC_PlasmaMembrane_InternalSideOfPlasmaMembrane_
--
--
--
csml-variable:Double
m4
0
infinite
0
--
TLR9 ligand: TLR9
--
e40
cso30:c:Complex
cso30:i:CC_PlasmaMembrane_IntegralToPlasmaMembrane_
--
csml-variable:Double
m40
0
infinite
0
--
TLR9 ligand
--
e41
cso30:c:Protein
cso30:i:CC_Extracellular
--
--
csml-variable:Double
m41
0
infinite
0
--
LPS: TLR4
--
e5
cso30:c:Complex
cso30:i:CC_PlasmaMembrane_InternalSideOfPlasmaMembrane_
--
csml-variable:Double
m5
0
infinite
0
--
--
e50
cso30:c:EntityBiologicalCompartment
cso30:i:CC_NuclearEnvelopeLumen
--
--
--
csml-variable:Double
m50
0
infinite
0
--
--
e51
cso30:c:EntityBiologicalCompartment
cso30:i:CC_NuclearPore
--
--
--
csml-variable:Double
m51
0
infinite
0
--
--
e52
cso30:c:EntityBiologicalCompartment
cso30:i:CC_NuclearInnerMembrane
--
--
--
csml-variable:Double
m52
0
infinite
0
--
--
e53
cso30:c:EntityBiologicalCompartment
cso30:i:CC_NuclearLumen
--
--
--
csml-variable:Double
m53
0
infinite
0
--
--
e54
cso30:c:EntityBiologicalCompartment
cso30:i:CC_NuclearOuterMembrane
--
--
--
csml-variable:Double
m54
0
infinite
0
--
--
e55
cso30:c:EntityBiologicalCompartment
cso30:i:CC_Nucleus
--
--
--
csml-variable:Double
m55
0
infinite
0
--
--
e56
cso30:c:EntityBiologicalCompartment
cso30:i:CC_Nucleoplasm
--
--
--
csml-variable:Double
m56
0
infinite
0
--
--
e57
cso30:c:EntityBiologicalCompartment
cso30:i:CC_NuclearBody
--
--
--
csml-variable:Double
m57
0
infinite
0
--
--
e58
cso30:c:EntityBiologicalCompartment
cso30:i:CC_Nucleolus
--
--
--
csml-variable:Double
m58
0
infinite
0
--
--
e59
cso30:c:EntityBiologicalCompartment
cso30:i:CC_NuclearEnvelope
--
--
--
csml-variable:Double
m59
0
infinite
0
--
csml-variable:Double
m6
10
infinite
0
Affymetrix | 104420_at |
Ensembl | ENSMUSG00000020826 |
MGD | Nos2 |
Proteome | HumanPSD/Nos2 |
RefSeq | NM_010927 |
TRANSFAC | G001073 |
Unigene | Mm.2893 |
--
--
e60
cso30:c:EntityBiologicalCompartment
cso30:i:CC_Chromatin
--
--
--
csml-variable:Double
m60
0
infinite
0
--
--
e61
cso30:c:EntityBiologicalCompartment
cso30:i:CC_NuclearChromosome
--
--
--
csml-variable:Double
m61
0
infinite
0
--
--
e62
cso30:c:EntityBiologicalCompartment
cso30:i:CC_NuclearCentromere
--
--
--
csml-variable:Double
m62
0
infinite
0
--
--
e7
cso30:c:EntityBiologicalCompartment
cso30:i:CC_Cell
--
--
--
csml-variable:Double
m7
0
infinite
0
--
--
e8
cso30:c:EntityBiologicalCompartment
cso30:i:CC_Cell_WithoutCellWall_
--
--
--
csml-variable:Double
m8
0
infinite
0
--
--
e9
cso30:c:EntityBiologicalCompartment
cso30:i:CC_Cytoplasm
--
--
--
csml-variable:Double
m9
0
infinite
0
--
p1
p1
cso30:i:CE_CellProliferation
cso30:i:CC_CellComponent
--
--
--
and
mass
coefficient1:0.1
coefficient2:1.0
stoichiometry:c87 : 1
stoichiometry:c88 : 1
m33*0.1
nodelay
--
0
PMID: 14552837 Consistent with this, the proliferative response of bone-marrow-derived macrophages (BMMs) to colony-stimulating factor 1 [CSF1 or macrophage colony-stimulating factor (M-CSF)] was increased in IFNAR1¡Ý/¡Ý cells, as expected from the removal of an inhibitor of proliferation.
--
and
mass
coefficient1:0.1
coefficient2:1.0
stoichiometry:c19 : 1
stoichiometry:c22 : 1
stoichiometry:c17 : 1
m183*m17*0.1
nodelay
--
0
PMID: 14552837 This is followed by the recruitment and activation of IRAK and TRAF6.
--
and
mass
coefficient1:0.1
coefficient2:1.0
stoichiometry:c14 : 1
stoichiometry:c15 : 1
m13*0.1
nodelay
--
0
PMID: 14552837 This is followed by the recruitment and activation of IRAK and TRAF6.
--
and
mass
coefficient1:0.1
coefficient2:1.0
stoichiometry:c16 : 1
stoichiometry:c20 : 1
stoichiometry:c21 : 1
m16*0.1
nodelay
--
0
PMID: 14552837 This is followed by the recruitment and activation of IRAK and TRAF6.
--
and
mass
coefficient1:0.1
coefficient2:1.0
stoichiometry:c23 : 1
stoichiometry:c24 : 1
m14*0.1
nodelay
--
0
PMID: 14552837 This is followed by the recruitment and activation of IRAK and TRAF6.
p14
p14
cso30:i:ME_UnknownActivation
cso30:i:CC_Cytosol
--
--
and
mass
coefficient1:0.1
coefficient2:1.0
stoichiometry:c27 : 1
stoichiometry:c30 : 1
stoichiometry:c28 : 1
m69*m18*0.1
nodelay
--
0
PMID: 14552837 This results in the activation of both the MAP kinases and NF-kappaB.
p15
p15
cso30:i:ME_Binding
cso30:i:CC_Extracellular
--
--
and
mass
coefficient1:0.1
coefficient2:1.0
stoichiometry:c26 : 1
stoichiometry:c40 : 1
stoichiometry:c41 : 1
m119368*m3965*0.1
nodelay
--
0
PMID: 14552837, 12471095, 12539043 Although previous studies would lead us to interpret data from overexpression or dominant-negative experiments with caution, the data on TLR3 activation of IFN-beta by TRIF/TICAM, but not by MyD88 or Mal/TIRAP, is consistent between these studies.
p16
p16
cso30:i:ME_UnknownActivation
cso30:i:CC_Cytosol
--
--
and
mass
coefficient1:0.1
coefficient2:1.0
stoichiometry:c29 : 1
stoichiometry:c39 : 1
stoichiometry:c38 : 1
m186*m18*0.1
nodelay
--
0
PMID: 14552837 This results in the activation of both the MAP kinases and NF-kappaB. PMID: 14552837 Recent studies demonstrated that IKbeta kinases, previously known to be involved in NF-kappaB activation, are essential for activation of IRF3 and 7.
p17
p17
cso30:i:ME_Translation
cso30:i:CC_Cytosol
--
--
and
mass
coefficient1:0.1
coefficient2:1.0
stoichiometry:c36 : 1
stoichiometry:c32 : 1
stoichiometry:c34 : 1
m93248*m21*0.1
nodelay
--
0
PMID: 14552837, 11257452 LPS effects are mediated by the products of TLR response genes (TRGs), such as inducible nitric oxide synthase (NOS2), which generates microbicidal nitric oxide (NO) and cytokines such as interleukin-6 (IL-6), tumor necrosis factor-greek small letter alpha (TNF-alpha), interferons (IFNs) and chemokines.
p18
p18
cso30:i:ME_Translation
cso30:i:CC_Cytosol
--
--
and
mass
coefficient1:0.1
coefficient2:1.0
stoichiometry:c37 : 1
stoichiometry:c33 : 1
stoichiometry:c31 : 1
m93309*m21*0.1
nodelay
--
0
PMID: 14552837, 11257452 LPS effects are mediated by the products of TLR response genes (TRGs), such as inducible nitric oxide synthase (NOS2), which generates microbicidal nitric oxide (NO) and cytokines such as interleukin-6 (IL-6), tumor necrosis factor-greek small letter alpha (TNF-alpha), interferons (IFNs) and chemokines.
--
and
mass
coefficient1:0.1
coefficient2:1.0
stoichiometry:c42 : 1
stoichiometry:c43 : 1
stoichiometry:c44 : 1
m18998*m19*0.1
nodelay
--
0
PMID: 14552837, 12471095, 12539043 Although previous studies would lead us to interpret data from overexpression or dominant-negative experiments with caution, the data on TLR3 activation of IFN-beta by TRIF/TICAM, but not by MyD88 or Mal/TIRAP, is consistent between these studies.
PMID: 14552837, 8783497 Furthermore, IFN-beta itself can regulate the differentiation or activation of almost all effector cells of the immune system, including B cells and DCs.
p20
p20
cso30:i:ME_UnknownActivation
cso30:i:CC_Cytosol
--
--
and
mass
coefficient1:0.1
coefficient2:1.0
stoichiometry:c45 : 1
stoichiometry:c47 : 1
stoichiometry:c46 : 1
m977*m23*0.1
nodelay
--
0
PMID: 14552837, 12471095, 12539043 Although previous studies would lead us to interpret data from overexpression or dominant-negative experiments with caution, the data on TLR3 activation of IFN-beta by TRIF/TICAM, but not by MyD88 or Mal/TIRAP, is consistent between these studies. PMID: 14552837 However, in response to double-stranded RNA (poly I:C) activation of a related TLR3 receptor, the TRIF?TIR-containing adaptor molecule (TICAM) leads to IRF3 activation.
p21
p21
cso30:i:ME_Translation
cso30:i:CC_Cytosol
--
--
and
mass
coefficient1:0.1
coefficient2:1.0
stoichiometry:c48 : 1
stoichiometry:c50 : 1
stoichiometry:c49 : 1
m93217*m24*0.1
nodelay
--
0
PMID: 14552837, 12471095, 12539043 Although previous studies would lead us to interpret data from overexpression or dominant-negative experiments with caution, the data on TLR3 activation of IFN-beta by TRIF/TICAM, but not by MyD88 or Mal/TIRAP, is consistent between these studies. PMID: 14552837 First, activation of IRF3 generated IFN-beta and -alpha4. PMID: 14552837, 11698465 Recent analyses of TLR signaling have identified the LPS induction of additional IFN response genes (IRGs), including IFN-gamma-inducible protein 10 (IP-10), monocyte chemotactic protein 5 (MCP-5), RANTES and IFN-stimulated gene 15 (ISG15), as well as IFN-beta through a so-called MyD88-independent pathway.
--
and
mass
coefficient1:0.1
coefficient2:1.0
stoichiometry:c52 : 1
stoichiometry:c53 : 1
stoichiometry:c51 : 1
m25*m24*0.1
nodelay
--
0
PMID: 14552837 First, activation of IRF3 generated IFN-beta and -alpha4.
p23
p23
cso30:i:ME_Binding
cso30:i:CC_PlasmaMembrane_IntegralToPlasmaMembrane_
--
--
and
mass
coefficient1:0.1
coefficient2:1.0
stoichiometry:c54 : 1
stoichiometry:c55 : 1
stoichiometry:c56 : 1
m1636*m898*0.1
nodelay
--
0
PMID: 14552837 These acted through their cognate receptors, IFNAR1 and IFNAR2, to activate STAT1 to induce IRF7.
p24
p24
cso30:i:ME_Binding
cso30:i:CC_Extracellular
--
--
and
mass
coefficient1:0.1
coefficient2:1.0
stoichiometry:c57 : 1
stoichiometry:c58 : 1
stoichiometry:c59 : 1
m1636*m901*0.1
nodelay
--
0
PMID: 14552837 These acted through their cognate receptors, IFNAR1 and IFNAR2, to activate STAT1 to induce IRF7.
p25
p25
cso30:i:ME_UnknownActivation
cso30:i:CC_Nucleoplasm
--
--
and
mass
coefficient1:0.1
coefficient2:1.0
stoichiometry:c60 : 1
stoichiometry:c62 : 1
stoichiometry:c63 : 1
m27*m1357*0.1
nodelay
--
0
PMID: 14552837 These acted through their cognate receptors, IFNAR1 and IFNAR2, to activate STAT1 to induce IRF7.
p26
p26
cso30:i:ME_UnknownActivation
cso30:i:CC_Nucleoplasm
--
--
and
mass
coefficient1:0.1
coefficient2:1.0
stoichiometry:c61 : 1
stoichiometry:c64 : 1
stoichiometry:c65 : 1
m28*m1357*0.1
nodelay
--
0
PMID: 14552837 These acted through their cognate receptors, IFNAR1 and IFNAR2, to activate STAT1 to induce IRF7.
--
and
mass
coefficient1:0.1
coefficient2:1.0
stoichiometry:c67 : 1
stoichiometry:c66 : 1
m29*0.1
nodelay
--
0
PMID: 14552837 These acted through their cognate receptors, IFNAR1 and IFNAR2, to activate STAT1 to induce IRF7.
--
and
mass
coefficient1:0.1
coefficient2:1.0
stoichiometry:c125 : 1
stoichiometry:c69 : 1
m31*0.1
nodelay
--
0
PMID: 14552837 Activation of IRF7 then induced the remaining IFN-alpha subtype.
p29
p29
cso30:i:ME_UnknownActivation
cso30:i:CC_Cytosol
--
--
and
mass
coefficient1:0.1
coefficient2:1.0
stoichiometry:c70 : 1
stoichiometry:c71 : 1
stoichiometry:c72 : 1
m22*m980*0.1
nodelay
--
0
PMID: 14552837 Recent studies demonstrated that IKbeta kinases, previously known to be involved in NF-kappaB activation, are essential for activation of IRF3 and 7.
--
and
mass
coefficient1:0.1
coefficient2:1.0
stoichiometry:c124 : 1
stoichiometry:c123 : 1
m93631*0.1
nodelay
--
0
PMID: 14552837 Activation of IRF7 then induced the remaining IFN-alpha subtype.
p30
p30
cso30:i:ME_UnknownActivation
cso30:i:CC_Cytosol
--
--
and
mass
coefficient1:0.1
coefficient2:1.0
stoichiometry:c73 : 1
stoichiometry:c75 : 1
stoichiometry:c74 : 1
m977*m22*0.1
nodelay
--
0
PMID: 14552837 Recent studies demonstrated that IKbeta kinases, previously known to be involved in NF-kappaB activation, are essential for activation of IRF3 and 7.
p31
p31
cso30:i:ME_UnknownActivation
cso30:i:CC_Cytosol
--
--
and
mass
coefficient1:0.1
coefficient2:1.0
stoichiometry:c78 : 1
stoichiometry:c80 : 1
stoichiometry:c81 : 1
stoichiometry:c79 : 1
m977*m5*m43675*0.1
nodelay
--
0
PMID: 14552837, 12062447 Similar studies indicated that Mal was necessary for the activation of IRF3 by LPS but not by poly I:C.
p32
p32
cso30:i:ME_Translation
cso30:i:CC_Cytosol
--
--
and
mass
coefficient1:0.1
coefficient2:1.0
stoichiometry:c83 : 1
stoichiometry:c94 : 1
stoichiometry:c97 : 1
m93487*m24*0.1
nodelay
--
0
PMID: 14552837, 11698465 Recent analyses of TLR signaling have identified the LPS induction of additional IFN response genes (IRGs), including IFN-gamma-inducible protein 10 (IP-10), monocyte chemotactic protein 5 (MCP-5), RANTES and IFN-stimulated gene 15 (ISG15), as well as IFN-beta through a so-called MyD88-independent pathway.
--
and
mass
coefficient1:0.1
coefficient2:1.0
stoichiometry:c90 : 1
stoichiometry:c91 : 1
stoichiometry:c89 : 1
m93519*m5*0.1
nodelay
--
0
PMID: 14552837, 11052814 We then demonstrated that LPS induction of NOS2 [22] and cyclin D2 [23] was also absent in IFNAR1¡Ý/¡Ý cells.
p34
p34
cso30:i:ME_Binding
cso30:i:CC_PlasmaMembrane_ExternalSideOfPlasmaMembrane_
--
--
and
mass
coefficient1:0.1
coefficient2:1.0
stoichiometry:c84 : 1
stoichiometry:c85 : 1
stoichiometry:c86 : 1
m89*m76*0.1
nodelay
--
0
PMID: 14552837 Consistent with this, the proliferative response of bone-marrow-derived macrophages (BMMs) to colony-stimulating factor 1 [CSF1 or macrophage colony-stimulating factor (M-CSF)] was increased in IFNAR1¡Ý/¡Ý cells, as expected from the removal of an inhibitor of proliferation.
--
and
mass
coefficient1:0.1
coefficient2:1.0
stoichiometry:c82 : 1
stoichiometry:c93 : 1
stoichiometry:c98 : 1
m15*m24*0.1
nodelay
--
0
PMID: 14552837, 11698465 Recent analyses of TLR signaling have identified the LPS induction of additional IFN response genes (IRGs), including IFN-gamma-inducible protein 10 (IP-10), monocyte chemotactic protein 5 (MCP-5), RANTES and IFN-stimulated gene 15 (ISG15), as well as IFN-beta through a so-called MyD88-independent pathway.
--
and
mass
coefficient1:0.1
coefficient2:1.0
stoichiometry:c92 : 1
stoichiometry:c95 : 1
stoichiometry:c96 : 1
m32*m24*0.1
nodelay
--
0
PMID: 14552837, 11698465 Recent analyses of TLR signaling have identified the LPS induction of additional IFN response genes (IRGs), including IFN-gamma-inducible protein 10 (IP-10), monocyte chemotactic protein 5 (MCP-5), RANTES and IFN-stimulated gene 15 (ISG15), as well as IFN-beta through a so-called MyD88-independent pathway.
p37
p37
cso30:i:ME_Binding
cso30:i:CC_Extracellular
--
--
and
mass
coefficient1:0.1
coefficient2:1.0
stoichiometry:c99 : 1
stoichiometry:c100 : 1
stoichiometry:c101 : 1
m2121*m12340*0.1
nodelay
--
0
PMID: 14552837 IFN-gamma is produced predominantly by T cells, natural killer (NK) cells and NKT cells in response to mitogens or cytokines (e.g. IL-12).
p38
p38
cso30:i:ME_Translation
cso30:i:CC_Cytosol
--
--
and
mass
coefficient1:0.1
coefficient2:1.0
stoichiometry:c103 : 1
stoichiometry:c104 : 1
stoichiometry:c102 : 1
m93423*m35*0.1
nodelay
--
0
PMID: 14552837 IFN-gamma is produced predominantly by T cells, natural killer (NK) cells and NKT cells in response to mitogens or cytokines (e.g. IL-12).
p39
p39
cso30:i:ME_Translation
cso30:i:CC_Cytosol
--
--
and
mass
coefficient1:0.1
coefficient2:1.0
stoichiometry:c109 : 1
stoichiometry:c110 : 1
stoichiometry:c105 : 1
m37*m93589*0.1
nodelay
--
0
PMID: 14552837, 11477402 Not only is the TLR response the cornerstone of innate immunity but the products of TLR signaling (e.g. IFNs, IL-12) also shape the adaptive immune response.
p4
p4
cso30:i:CE_Apoptosis_InhibitionOfCellSurvival_
cso30:i:CC_Cytosol
--
--
PMID: 14552837, 8783497, 8658169, 10871875 It can polarize the immune response towards a T helper 1 (Th1) response [27], promote survival of memory T cells [28] and prevent T-cell apoptosis (which could be responsible for persistent T-cell infiltrates in chronic inflammation, such as rheumatoid arthritis).
--
and
mass
coefficient1:0.1
coefficient2:1.0
stoichiometry:c106 : 1
stoichiometry:c107 : 1
stoichiometry:c108 : 1
m36*m3962*0.1
nodelay
--
0
PMID: 14552837, 11477402 Not only is the TLR response the cornerstone of innate immunity but the products of TLR signaling (e.g. IFNs, IL-12) also shape the adaptive immune response.
p41
p41
cso30:i:ME_Binding
cso30:i:CC_Cytosol
--
--
and
mass
coefficient1:0.1
coefficient2:1.0
stoichiometry:c111 : 1
stoichiometry:c114 : 1
stoichiometry:c112 : 1
m184*m2002*0.1
nodelay
--
0
PMID: 14552837 Although the rapidity of the effect of SOCS in vitro and the association with IRAK suggested that there was a direct effect of SOCS on TLR signaling.
--
and
mass
coefficient1:0.1
coefficient2:1.0
stoichiometry:c115 : 1
stoichiometry:c116 : 1
stoichiometry:c113 : 1
m39*m5*0.1
nodelay
--
0
PMID: 14552837, 12433365, 12433373, 10453004 SOCS are induced after activation of TLR4 [51 and 52] and TLR9[50].
--
and
mass
coefficient1:0.1
coefficient2:1.0
stoichiometry:c118 : 1
stoichiometry:c122 : 1
stoichiometry:c117 : 1
m39*m40*0.1
nodelay
--
0
PMID: 14552837, 12433365, 12433373, 10453004 SOCS are induced after activation of TLR4 [51 and 52] and TLR9[50].
--
and
mass
coefficient1:0.1
coefficient2:1.0
stoichiometry:c119 : 1
stoichiometry:c120 : 1
stoichiometry:c121 : 1
m41*m19828*0.1
nodelay
--
0
p16
p45
cso30:i:ME_UnknownActivation
cso30:i:CC_Cytosol
--
--
and
mass
coefficient1:0.1
coefficient2:1.0
stoichiometry:c68 : 1
stoichiometry:c127 : 1
stoichiometry:c126 : 1
m42*m22*0.1
nodelay
--
0
PMID: 14552837 This results in the activation of both the MAP kinases and NF-kappaB. PMID: 14552837 Recent studies demonstrated that IKbeta kinases, previously known to be involved in NF-kappaB activation, are essential for activation of IRF3 and 7.
p5
p5
cso30:i:ME_Binding
cso30:i:CC_Extracellular
--
--
and
mass
coefficient1:0.1
coefficient2:1.0
stoichiometry:c1 : 1
stoichiometry:c2 : 1
stoichiometry:c3 : 1
m155666*m3961*0.1
nodelay
--
0
PMID: 14552837, 9851930, 10201887 The prototype PAMP is lipopolysaccharide (LPS), a surface component of Gram-negative bacteria, which activates TLR4.
--
and
mass
coefficient1:0.1
coefficient2:1.0
stoichiometry:c4 : 1
stoichiometry:c35 : 1
stoichiometry:c5 : 1
m6*m21*0.1
nodelay
--
0
PMID: 14552837, 11257452 LPS effects are mediated by the products of TLR response genes (TRGs), such as inducible nitric oxide synthase (NOS2), which generates microbicidal nitric oxide (NO) and cytokines such as interleukin-6 (IL-6), tumor necrosis factor-greek small letter alpha (TNF-alpha), interferons (IFNs) and chemokines.
p7
p7
cso30:i:ME_ChangeInMaterialConcentration
cso30:i:CC_Cytosol
--
--
and
mass
coefficient1:0.1
coefficient2:1.0
stoichiometry:c6 : 1
stoichiometry:c7 : 1
m5576*0.1
nodelay
--
0
PMID: 14552837, 11257452 LPS effects are mediated by the products of TLR response genes (TRGs), such as inducible nitric oxide synthase (NOS2), which generates microbicidal nitric oxide (NO) and cytokines such as interleukin-6 (IL-6), tumor necrosis factor-greek small letter alpha (TNF-alpha), interferons (IFNs) and chemokines.
p8
p8
cso30:i:ME_Binding
cso30:i:CC_Cytosol
--
--
and
mass
coefficient1:0.1
coefficient2:1.0
stoichiometry:c8 : 1
stoichiometry:c10 : 1
stoichiometry:c18 : 1
stoichiometry:c9 : 1
m5*m1572*m43675*0.1
nodelay
--
0
PMID: 14552837, 11477402, 12072368 LPS activation of TLR4 signaling triggers the recruitment of the adaptor molecule MyD88 through their Toll?IL-1 receptor (TIR) domains. PMID: 14552837, 11544529, 11526399 The MyD88 adaptor-like (Mal) protein [38], also known as TIR-containing adaptor protein (TIRAP) [39], was discovered as a TIR-domain-containing adaptor that, unlike MyD88, does not have a death domain.
--
and
mass
coefficient1:0.1
coefficient2:1.0
stoichiometry:c11 : 1
stoichiometry:c13 : 1
stoichiometry:c12 : 1
m184*m12*0.1
nodelay
--
0
PMID: 14552837 This is followed by the recruitment and activation of IRAK and TRAF6.
cso30:c:InputProcess
threshold
--
0
1,
--
cso30:c:InputProcess
threshold
--
0
1,
--
cso30:c:OutputProcess
threshold
--
0
1,
--
cso30:c:InputAssociation
threshold
--
0
1,
--
cso30:c:InputAssociation
threshold
--
0
1,
--
cso30:c:OutputProcess
threshold
--
0
1,
--
cso30:c:InputProcess
threshold
--
0
1,
--
cso30:c:InputAssociation
threshold
--
0
1,
--
cso30:c:InputProcess
threshold
--
0
1,
--
cso30:c:InputAssociation
threshold
--
0
1,
--
cso30:c:InputProcess
threshold
--
0
1,
--
cso30:c:OutputProcess
threshold
--
0
1,
--
cso30:c:InputProcess
threshold
--
0
1,
--
cso30:c:InputAssociation
threshold
--
0
1,
--
cso30:c:InputAssociation
threshold
--
0
1,
--
cso30:c:OutputProcess
threshold
--
0
1,
--
cso30:c:InputAssociation
threshold
--
0
1,
--
cso30:c:InputProcess
threshold
--
0
1,
--
cso30:c:InputAssociation
threshold
--
0
1,
--
cso30:c:OutputProcess
threshold
--
0
1,
--
cso30:c:InputAssociation
threshold
--
0
1,
--
cso30:c:InputAssociation
threshold
--
0
1,
--
cso30:c:OutputProcess
threshold
--
0
1,
--
cso30:c:InputAssociation
threshold
--
0
1,
--
cso30:c:InputProcess
threshold
--
0
1,
--
cso30:c:InputProcess
threshold
--
0
1,
--
cso30:c:InputProcess
threshold
--
0
1,
--
cso30:c:OutputProcess
threshold
--
0
1,
--
cso30:c:InputProcess
threshold
--
0
1,
--
cso30:c:OutputProcess
threshold
--
0
1,
--
cso30:c:OutputProcess
threshold
--
0
1,
--
cso30:c:InputProcess
threshold
--
0
1,
--
cso30:c:InputAssociation
threshold
--
0
1,
--
cso30:c:InputAssociation
threshold
--
0
1,
--
cso30:c:InputAssociation
threshold
--
0
1,
--
cso30:c:InputAssociation
threshold
--
0
1,
--
cso30:c:InputAssociation
threshold
--
0
1,
--
cso30:c:InputAssociation
threshold
--
0
1,
--
cso30:c:InputAssociation
threshold
--
0
1,
--
cso30:c:InputProcess
threshold
--
0
1,
--
cso30:c:InputProcess
threshold
--
0
1,
--
cso30:c:OutputProcess
threshold
--
0
1,
--
cso30:c:InputProcess
threshold
--
0
1,
--
cso30:c:InputAssociation
threshold
--
0
1,
--
cso30:c:InputAssociation
threshold
--
0
1,
--
cso30:c:InputAssociation
threshold
--
0
1,
--
cso30:c:OutputProcess
threshold
--
0
1,
--
cso30:c:InputAssociation
threshold
--
0
1,
--
cso30:c:InputAssociation
threshold
--
0
1,
--
cso30:c:InputProcess
threshold
--
0
1,
--
cso30:c:InputProcess
threshold
--
0
1,
--
cso30:c:InputAssociation
threshold
--
0
1,
--
cso30:c:InputAssociation
threshold
--
0
1,
--
cso30:c:InputAssociation
threshold
--
0
1,
--
cso30:c:InputProcess
threshold
--
0
1,
--
cso30:c:InputProcess
threshold
--
0
1,
--
cso30:c:InputAssociation
threshold
--
0
1,
--
cso30:c:InputAssociation
threshold
--
0
1,
--
cso30:c:OutputProcess
threshold
--
0
1,
--
cso30:c:InputAssociation
threshold
--
0
1,
--
cso30:c:InputAssociation
threshold
--
0
1,
--
cso30:c:OutputProcess
threshold
--
0
1,
--
cso30:c:InputProcess
threshold
--
0
1,
--
cso30:c:InputAssociation
threshold
--
0
1,
--
cso30:c:InputAssociation
threshold
--
0
1,
--
cso30:c:InputAssociation
threshold
--
0
1,
--
cso30:c:InputAssociation
threshold
--
0
1,
--
cso30:c:InputProcess
threshold
--
0
1,
--
cso30:c:InputAssociation
threshold
--
0
1,
--
cso30:c:InputInhibitor
threshold
--
0
1,
--
cso30:c:OutputProcess
threshold
--
0
1,
--
cso30:c:InputAssociation
threshold
--
0
1,
--
cso30:c:InputAssociation
threshold
--
0
1,
--
cso30:c:InputAssociation
threshold
--
0
1,
--
cso30:c:InputAssociation
threshold
--
0
1,
--
cso30:c:InputAssociation
threshold
--
0
1,
--
cso30:c:InputAssociation
threshold
--
0
1,
--
cso30:c:OutputProcess
threshold
--
0
1,
--
cso30:c:OutputProcess
threshold
--
0
1,
--