1. Information
    majorVersion:3 minorVersion:0 projectID:local projectVersionID:undef fileName:/home/ikeda/eclipse/workspace/macrophage/csml/ok/csml/16785490.csml convertedTime:2009.07.01.10:56

  2. Original Literature
  3. Model OverView
  4. Model Abstracts
  5. Model Detail
  6. Download
Original Literature Model OverView
Publication
Title Intracellular TLR signaling: a structural perspective on human disease.
Authors Lasker MV, Nair SK.
Affiliation Department of Biochemistry, University of Illinois at Urbana-Champaign, 600South Mathews Avenue, Urbana, IL 61801, USA. lasker@uiuc.edu
Abstract TLRs are crucial sensors of microbial infection. Maintaining structuralintegrity of TLR signaling components is essential for subsequent immunologicalprotection. Alterations to the structure of these signaling molecules are oftenassociated with profound clinical outcomes and susceptibility to variousinfectious diseases. These changes in structure are sometimes the result of asingle nucleotide polymorphism (SNP). Numerous SNPs have been found incomponents of the TLR signaling pathway. Recently, the medical consequences andeffects on TLR signaling of several of these SNPs have been elucidated. Inaddition, there have been numerous structures solved that are important to ourunderstanding of the TLR signaling pathway at the molecular level. The scope ofthis review is to tie together current structural, biochemical, and geneticinformation of TLR signaling.
PMID 16785490
Model Abstract

Entity

MO000000058:NF-kappaB MO000000077:MAPKs MO000000213:IRAK-1 MO000016573:MyD88 MO000016642:pelle(d) MO000019387:cytokines MO000019394:TLR4 MO000019396:TLR1 MO000019397:TLR2 MO000039077:IRAK-4 MO000041132:TRAM MO000042032:PGN MO000068831:MAL MO000091902:Myd88(d) e1: e10: e11:NF-kappaB{activated} e12:Ligand: TLR: MyD88 e13:PGN: TLR2: TLR1: MAL e14:Ligand: TLR: MyD88: IRAK-1{p}: IRAK-4 e15:Ligand: TLR: MyD88: IRAK-1{p}: IRAK-4 e16:A46R e17:PGN: TLR2: TLR1 e18:TLR2: TLR1 e19:A46R: MyD88 e2: e20:MAPKs{activated} e21:A46R: TLR4 e22:drocomycin e23:cytokine e24:Tube e25:Tube: pelle(d) e26:MyD88s e27:ligand: Toll receptor: MyD88(d) e28:ligand: Toll receptor e29:ligand: Toll receptor: MyD88(d): Tube: pelle(d) e3: e30:pelle: pelle(d) e31:pelle: pelle(d){p} e32:PGN: TLR2: TLR1: MAL: MyD88 e33:LPS: TLR4 e34:LPS: TLR4: MAL e35:LPS: TLR4: MAL: MyD88 e4: e5:Ligand: TLR: MyD88: IRAK-1: IRAK-4 e50: e51: e52: e53: e54: e55: e56: e57: e58: e59: e6:Ligand: TLR e60: e61: e62: e7: e8: e9:

Process

p1 p10 p11 p12 p13 p14 p15 p16 p17 p18 p19 p2 p20 p21 p3 p4 p5 p6 p7 p8 p9
Model Detail
650.0, 399.0
27.0, 27.0

NF-kappaB

--

MO000000058

cso30:c:Protein

cso30:i:CC_CellComponent

--

--

p7

true true true true

csml-variable:Double

m24

10

false

infinite

0

unit false false false
TRANSPATHMO000000058

--

Go back
653.0, 298.0
29.0, 29.0

MAPKs

--

MO000000077

cso30:c:Protein

cso30:i:CC_CellComponent

--

--

p11

true true true true

csml-variable:Double

m69

10

false

infinite

0

unit false false false
TRANSPATHMO000000077

--

Go back
618.0, 207.0
28.0, 28.0

IRAK-1

--

MO000000213

cso30:c:Protein

cso30:i:CC_CellComponent

--

--

p2

true true true true

csml-variable:Double

m184

10

false

infinite

0

unit false false false
InterProIPR000719
TRANSPATHMO000000213

--

Go back
545.0, 146.0
30.0, 30.0

MyD88

--

MO000016573

cso30:c:Protein

cso30:i:CC_CellComponent

--

--

p1 p10 p19 p21

true true true true

csml-variable:Double

m1572

10

false

infinite

0

unit false false false
InterProIPR000157
TRANSPATHMO000016573

--

Go back
468.0, 385.0
23.0, 23.0

pelle(d)

--

MO000016642

cso30:c:Protein

cso30:i:CC_CellComponent

--

--

p14 p17

true true true true

csml-variable:Double

m1626

10

false

infinite

0

unit false false false
BRENDA2.7.1.37
flybaseFBgn0010441
InterProIPR000719
TRANSPATHMO000016642
UniProtQ05652

--

Go back
714.0, 603.0
28.5, 28.5

cytokines

--

MO000019387

cso30:c:Protein

cso30:i:CC_CellComponent

--

p8

--

true true true true

csml-variable:Double

m3957

10

false

infinite

0

unit false false false
TRANSPATHMO000019387

--

Go back
439.0, 60.0
26.0, 26.0

TLR4

--

MO000019394

cso30:c:Protein

cso30:i:CC_CellComponent

--

--

p12

true true true true

csml-variable:Double

m3961

10

false

infinite

0

unit false false false

--

Go back
237.0, 106.0
22.0, 22.0

TLR1

--

MO000019396

cso30:c:Protein

cso30:i:CC_CellComponent

--

--

p3

true true true true

csml-variable:Double

m3963

10

false

infinite

0

unit false false false

--

Go back
240.0, 141.0
24.0, 24.0

TLR2

--

MO000019397

cso30:c:Protein

cso30:i:CC_CellComponent

--

--

p3

true true true true

csml-variable:Double

m3964

10

false

infinite

0

unit false false false

--

Go back
650.0, 247.0
27.0, 27.0

IRAK-4

--

MO000039077

cso30:c:Protein

cso30:i:CC_CellComponent

--

--

p2

true true true true

csml-variable:Double

m17258

10

false

infinite

0

unit false false false
TRANSPATHMO000039077

--

Go back
410.0, 218.0
28.0, 28.0

TRAM

--

MO000041132

cso30:c:Protein

cso30:i:CC_CellComponent

--

--

--

true true true true

csml-variable:Double

m19005

10

false

infinite

0

unit false false false
TRANSPATHMO000041132

--

Go back
155.0, 232.0
25.0, 25.0

PGN

--

MO000042032

cso30:c:Protein

cso30:i:CC_CellComponent

--

--

p4

true true true true

csml-variable:Double

m155701

10

false

infinite

0

unit false false false
TRANSPATHMO000042032

--

Go back
353.0, 257.0
30.5, 30.5

MAL

--

MO000068831

cso30:c:Protein

cso30:i:CC_CellComponent

--

--

p9 p20

true true true true

csml-variable:Double

m43675

10

false

infinite

0

unit false false false
TRANSPATHMO000068831

--

Go back
349.0, 371.0
28.0, 28.0

Myd88(d)

--

MO000091902

cso30:c:Protein

cso30:i:CC_CellComponent

--

--

p16

true true true true

csml-variable:Double

m313521

10

false

infinite

0

unit false false false
TRANSPATHMO000091902

--

Go back
229.80177656919807, 60.5939028237197
562.9470742801101, 817.3991518547189

--

e1

cso30:c:EntityBiologicalCompartment

cso30:i:CC_PlasmaMembrane

--

--

--

true true true true

csml-variable:Double

m1

0

false

infinite

0

unit false true false

--

Go back
235.22573243317015, 73.08747036766482
545.668104278904, 767.6015892691856

--

e10

cso30:c:EntityBiologicalCompartment

cso30:i:CC_Cytosol

--

--

--

true true true true

csml-variable:Double

m10

0

false

infinite

0

unit false true false

--

Go back
650.0, 441.0
27.0, 27.0

NF-kappaB{activated}

--

e11

cso30:c:Protein

cso30:i:CC_CellComponent

--

p7

p8

true true true true

csml-variable:Double

m11

10

false

infinite

0

unit false false false
TRANSPATHMO000000058

--

Go back
596.875, 71.5
30.695402826206646, 42.830794641218574

Ligand: TLR: MyD88

--

e12

cso30:c:Complex

cso30:i:CC_PlasmaMembrane_IntegralToPlasmaMembrane_

--

p1

p2

true true true true

csml-variable:Double

m12

0

false

infinite

0

unit false false false

--

Go back
237.875, 252.5
28.935630390897412, 40.37529821985685

PGN: TLR2: TLR1: MAL

--

e13

cso30:c:Complex

cso30:i:CC_PlasmaMembrane_IntegralToPlasmaMembrane_

--

true true true true

csml-variable:Double

m13

0

false

infinite

0

unit false false false

--

Go back
707.875, 46.5
32.25, 45.0

Ligand: TLR: MyD88: IRAK-1{p}: IRAK-4

--

e14

cso30:c:Complex

cso30:i:CC_PlasmaMembrane_IntegralToPlasmaMembrane_

--

p5

p6

true true true true

csml-variable:Double

m14

0

false

infinite

0

unit false false false

--

Go back
755.875, 194.5
32.25, 45.0

Ligand: TLR: MyD88: IRAK-1{p}: IRAK-4

--

e15

cso30:c:Complex

cso30:i:CC_PlasmaMembrane_IntegralToPlasmaMembrane_

--

true true true true

csml-variable:Double

m15

0

false

infinite

0

unit false false false

--

Go back
477.0, 152.5
30.24000000000001, 22.679999999999993

A46R

--

e16

cso30:c:Protein

cso30:i:CC_Extracellular

--

--

p10 p12

true true true true

csml-variable:Double

m16

0

false

infinite

0

unit false false false

--

Go back
237.625, 207.5
29.13993501083153, 35.68155307448758

PGN: TLR2: TLR1

--

e17

cso30:c:Complex

cso30:i:CC_PlasmaMembrane_InternalSideOfPlasmaMembrane_

--

p4

p9

true true true true

csml-variable:Double

m17

0

false

infinite

0

unit false false false

--

Go back
228.5, 171.125
38.12, 28.59

TLR2: TLR1

--

e18

cso30:c:Protein

cso30:i:CC_PlasmaMembrane_IntegralToPlasmaMembrane_

--

p3

p4

true true true true

csml-variable:Double

m18

0

false

infinite

0

unit false false false

--

Go back
596.5, 263.0
30.089151808032, 36.843859356773876

A46R: MyD88

--

e19

cso30:c:Complex

cso30:i:CC_Cytosol

--

true true true true

csml-variable:Double

m19

0

false

infinite

0

unit false false false

--

Go back
229.80177656919807, 60.5939028237197
562.9470742801101, 817.3991518547189

--

e2

cso30:c:EntityBiologicalCompartment

cso30:i:CC_PlasmaMembrane_ExternalSideOfPlasmaMembrane_

--

--

--

true true true true

csml-variable:Double

m2

0

false

infinite

0

unit false true false

--

Go back
653.0, 330.0
29.0, 29.0

MAPKs{activated}

--

e20

cso30:c:Protein

cso30:i:CC_CellComponent

--

p11

--

true true true true

csml-variable:Double

m20

10

false

infinite

0

unit false false false
TRANSPATHMO000000077

--

Go back
403.625, 68.5
25.310406598900183, 30.992334610898183

A46R: TLR4

--

e21

cso30:c:Complex

cso30:i:CC_Cytosol

--

p12

--

true true true true

csml-variable:Double

m21

0

false

infinite

0

unit false false false

--

Go back
474.5, 584.0
45.0, 24.0

drocomycin

--

e22

cso30:c:mRNA

cso30:i:CC_Nucleoplasm

--

p13

--

true true true true

csml-variable:Double

m22

0

false

infinite

0

unit false false false

--

Go back
569.5, 610.0
37.214532871972324, 19.847750865051903

cytokine

--

e23

cso30:c:mRNA

cso30:i:CC_Nucleoplasm

--

--

p8

true true true true

csml-variable:Double

m23

0

false

infinite

0

unit false false false

--

Go back
460.5, 345.125
31.240000000000002, 23.429999999999993

Tube

--

e24

cso30:c:Protein

cso30:i:CC_Cytosol

--

--

p14

true true true true

csml-variable:Double

m25

0

false

infinite

0

unit false false false

--

Go back
409.625, 416.5
27.759998333611065, 33.99183469421762

Tube: pelle(d)

--

e25

cso30:c:Complex

cso30:i:CC_Cytosol

--

true true true true

csml-variable:Double

m26

0

false

infinite

0

unit false false false

--

Go back
708.5, 217.125
31.080000000000002, 23.309999999999995

MyD88s

--

e26

cso30:c:Protein

cso30:i:CC_Cytosol

--

--

p2 p5 p6 p7

true true true true

csml-variable:Double

m27

0

false

infinite

0

unit false false false

--

Go back
235.875, 412.5
29.74054872453661, 41.498440080748765

ligand: Toll receptor: MyD88(d)

--

e27

cso30:c:Complex

cso30:i:CC_PlasmaMembrane_IntegralToPlasmaMembrane_

--

true true true true

csml-variable:Double

m28

0

false

infinite

0

unit false false false

--

Go back
239.375, 362.5
23.25, 45.0

ligand: Toll receptor

--

e28

cso30:c:Complex

cso30:i:CC_PlasmaMembrane_IntegralToPlasmaMembrane_

--

--

p16

true true true true

csml-variable:Double

m29

0

false

infinite

0

unit false false false

--

Go back
234.875, 466.5
32.25, 45.0

ligand: Toll receptor: MyD88(d): Tube: pelle(d)

--

e29

cso30:c:Complex

cso30:i:CC_PlasmaMembrane_IntegralToPlasmaMembrane_

--

true true true true

csml-variable:Double

m30

0

false

infinite

0

unit false false false

--

Go back
241.06071805480025, 71.85284430932188
540.4291913089057, 794.8812688835148

--

e3

cso30:c:EntityBiologicalCompartment

cso30:i:CC_PlasmaMembrane_IntegralToPlasmaMembrane_

--

--

--

true true true true

csml-variable:Double

m3

0

false

infinite

0

unit false true false

--

Go back
467.625, 489.5
25.220588235294116, 30.882352941176467

pelle: pelle(d)

--

e30

cso30:c:Complex

cso30:i:CC_Cytosol

--

true true true true

csml-variable:Double

m31

0

false

infinite

0

unit false false false

--

Go back
361.625, 487.5
29.090943176137316, 35.621563072821196

pelle: pelle(d){p}

--

e31

cso30:c:Complex

cso30:i:CC_Cytosol

--

true true true true

csml-variable:Double

m32

0

false

infinite

0

unit false false false

--

Go back
237.875, 304.5
29.140805652413288, 40.66158928243715

PGN: TLR2: TLR1: MAL: MyD88

--

e32

cso30:c:Complex

cso30:i:CC_PlasmaMembrane_IntegralToPlasmaMembrane_

--

p19

--

true true true true

csml-variable:Double

m33

0

false

infinite

0

unit false false false

--

Go back
353.625, 38.5
28.821488085319118, 35.29161806365605

LPS: TLR4

--

e33

cso30:c:Complex

cso30:i:CC_PlasmaMembrane_IntegralToPlasmaMembrane_

--

--

p20

true true true true

csml-variable:Double

m34

0

false

infinite

0

unit false false false

--

Go back
309.875, 48.5
27.91764543953019, 38.95485410167003

LPS: TLR4: MAL

--

e34

cso30:c:Complex

cso30:i:CC_PlasmaMembrane_IntegralToPlasmaMembrane_

--

true true true true

csml-variable:Double

m35

0

false

infinite

0

unit false false false

--

Go back
239.875, 57.5
32.25, 45.0

LPS: TLR4: MAL: MyD88

--

e35

cso30:c:Complex

cso30:i:CC_PlasmaMembrane_IntegralToPlasmaMembrane_

--

p21

--

true true true true

csml-variable:Double

m36

0

false

infinite

0

unit false false false

--

Go back
261.88975980316445, 91.55599190912562
498.77110781217766, 755.4749736839068

--

e4

cso30:c:EntityBiologicalCompartment

cso30:i:CC_PlasmaMembrane_InternalSideOfPlasmaMembrane_

--

--

--

true true true true

csml-variable:Double

m4

0

false

infinite

0

unit false true false

--

Go back
647.875, 58.5
32.25, 45.0

Ligand: TLR: MyD88: IRAK-1: IRAK-4

--

e5

cso30:c:Complex

cso30:i:CC_PlasmaMembrane_InternalSideOfPlasmaMembrane_

--

p2

p5

true true true true

csml-variable:Double

m5

0

false

infinite

0

unit false false false

--

Go back
348.96444327767534, 531.9870089194832
306.141264608878, 277.63649136782817

--

e50

cso30:c:EntityBiologicalCompartment

cso30:i:CC_NuclearEnvelopeLumen

--

--

--

true true true true

csml-variable:Double

m50

0

false

infinite

0

unit false true false

--

Go back
382.0299802372933, 538.5665901449286
179.00997595379474, 269.0850593955129

--

e51

cso30:c:EntityBiologicalCompartment

cso30:i:CC_NuclearPore

--

--

--

true true true true

csml-variable:Double

m51

0

false

infinite

0

unit false true false

--

Go back
352.95511153142235, 535.6926294408194
298.1599281013842, 270.22525032515506

--

e52

cso30:c:EntityBiologicalCompartment

cso30:i:CC_NuclearInnerMembrane

--

--

--

true true true true

csml-variable:Double

m52

0

false

infinite

0

unit false true false

--

Go back
353.52520699624336, 536.2627249056404
297.0197371717421, 269.0850593955129

--

e53

cso30:c:EntityBiologicalCompartment

cso30:i:CC_NuclearLumen

--

--

--

true true true true

csml-variable:Double

m53

0

false

infinite

0

unit false true false

--

Go back
348.96444327767534, 531.9870089194832
306.141264608878, 277.63649136782817

--

e54

cso30:c:EntityBiologicalCompartment

cso30:i:CC_NuclearOuterMembrane

--

--

--

true true true true

csml-variable:Double

m54

0

false

infinite

0

unit false true false

--

Go back
348.96444327767534, 531.9870089194832
306.141264608878, 277.63649136782817

--

e55

cso30:c:EntityBiologicalCompartment

cso30:i:CC_Nucleus

--

--

--

true true true true

csml-variable:Double

m55

0

false

infinite

0

unit false true false

--

Go back
353.52520699624336, 536.2627249056404
297.0197371717421, 269.0850593955129

--

e56

cso30:c:EntityBiologicalCompartment

cso30:i:CC_Nucleoplasm

--

--

--

true true true true

csml-variable:Double

m56

0

false

infinite

0

unit false true false

--

Go back
572.4418654875077, 646.0061018836835
19.12602411833712, 17.314084991336784

--

e57

cso30:c:EntityBiologicalCompartment

cso30:i:CC_NuclearBody

--

--

--

true true true true

csml-variable:Double

m57

0

false

infinite

0

unit false true false

--

Go back
522.2734645832597, 725.819466958624
54.15906915799519, 49.028209974606234

--

e58

cso30:c:EntityBiologicalCompartment

cso30:i:CC_Nucleolus

--

--

--

true true true true

csml-variable:Double

m58

0

false

infinite

0

unit false true false

--

Go back
348.96444327767534, 531.9870089194832
306.141264608878, 277.63649136782817

--

e59

cso30:c:EntityBiologicalCompartment

cso30:i:CC_NuclearEnvelope

--

--

--

true true true true

csml-variable:Double

m59

0

false

infinite

0

unit false true false

--

Go back
546.5, 80.0
27.949841693051166, 34.2242959506749

Ligand: TLR

--

e6

cso30:c:Complex

cso30:i:CC_Cytosol

--

--

p1

true true true true

csml-variable:Double

m6

0

false

infinite

0

unit false false false

--

Go back
421.120216807657, 655.3663715541315
9.69504402282643, 4.667984159138655

--

e60

cso30:c:EntityBiologicalCompartment

cso30:i:CC_Chromatin

--

--

--

true true true true

csml-variable:Double

m60

0

false

infinite

0

unit false true false

--

Go back
420.7964718451218, 641.4453381651153
33.18385865986399, 59.73094558775512

--

e61

cso30:c:EntityBiologicalCompartment

cso30:i:CC_NuclearChromosome

--

--

--

true true true true

csml-variable:Double

m61

0

false

infinite

0

unit false true false

--

Go back
434.7175052341382, 680.2947336693462
5.179919400564129, 5.179919400564127

--

e62

cso30:c:EntityBiologicalCompartment

cso30:i:CC_NuclearCentromere

--

--

--

true true true true

csml-variable:Double

m62

0

false

infinite

0

unit false true false

--

Go back
237.19808002006903, 63.8831816288031
552.0756944561814, 782.2769987866188

--

e7

cso30:c:EntityBiologicalCompartment

cso30:i:CC_Cell

--

--

--

true true true true

csml-variable:Double

m7

0

false

infinite

0

unit false true false

--

Go back
239.17042760696802, 77.68961473709567
529.612792099017, 768.9977741277729

--

e8

cso30:c:EntityBiologicalCompartment

cso30:i:CC_Cell_WithoutCellWall_

--

--

--

true true true true

csml-variable:Double

m8

0

false

infinite

0

unit false true false

--

Go back
244.4300211720318, 91.49604784538818
527.1948191922534, 758.9125610134944

--

e9

cso30:c:EntityBiologicalCompartment

cso30:i:CC_Cytoplasm

--

--

--

true true true true

csml-variable:Double

m9

0

false

infinite

0

unit false true false

--

Go back
599.0, 148.0
25.0, 25.0

p1

p1

cso30:i:ME_Binding

cso30:i:CC_Cytosol

--

true true true true

--

and

mass

coefficient1:0.1
coefficient2:1.0
stoichiometry:c1 : 1
stoichiometry:c2 : 1
stoichiometry:c33 : 1
stoichiometry:c3 : 1

m6*m1572*0.1

nodelay

--

true

0

false

PMID: 16785490, 12810098 The TIR domain of the TLR interacts with a set of TIR domain-containing adaptor proteins. PMID: 16785490, 11743586 Drosophila MyD88 (dMyD88) was found to associate directly with the cytoplasmic portion of the Toll receptor and required Tube and Pelle to activate the expression of the antifungal peptide Drosomycin.

Go back
479.0, 268.0
25.0, 25.0

p10

p10

cso30:i:ME_Binding

cso30:i:CC_Cytosol

--

true true true true

--

and

mass

coefficient1:0.1
coefficient2:1.0
stoichiometry:c27 : 1
stoichiometry:c28 : 1
stoichiometry:c29 : 1

m16*m1572*0.1

nodelay

--

true

0

false

PMID: 16785490 In this study, A46R was shown to directly associate with MyD88 and inhibit MyD88 dependent signaling by both IL-1R and TLRs, presumably by interacting via its TIR domain.

Go back
694.0, 267.0
27.0, 27.0

p11

p11

cso30:i:ME_UnknownActivation

cso30:i:CC_Cytosol

--

true true true true

--

and

mass

coefficient1:0.1
coefficient2:1.0
stoichiometry:c30 : 1
stoichiometry:c32 : 1
stoichiometry:c34 : 1
stoichiometry:c31 : 1

m69*m15*0.1

nodelay

--

true

0

false

PMID: 16785490 In fact, a vaccinia virus immune evasion strategy using a TIR domain-containing viral protein, A46R, targets MyD88, Tirap/Mal, Trif/Ticam, and TRAM and interferes with the downstream activation of MAP kinases and NF-kappaB.

Go back
405.0, 153.0
22.0, 22.0

p12

p12

cso30:i:ME_Binding

cso30:i:CC_Cytosol

--

true true true true

--

and

mass

coefficient1:0.1
coefficient2:1.0
stoichiometry:c36 : 1
stoichiometry:c37 : 1
stoichiometry:c38 : 1

m3961*m16*0.1

nodelay

--

true

0

false

PMID: 16785490 Interestingly, the A46R protein was also able to be immunoprecipitated with TLR4 itself suggesting that the TIR domain of TLR4 might also be a target.

Go back
424.0, 583.0
25.0, 25.0

p13

p13

cso30:i:ME_GeneExpression

cso30:i:CC_Nucleoplasm

--

true true true true

--

and

mass

coefficient1:0.1
coefficient2:1.0
stoichiometry:c42 : 1
stoichiometry:c40 : 1

m30*0.1

nodelay

--

true

0

false

PMID: 16785490, 11743586 Drosophila MyD88 (dMyD88) was found to associate directly with the cytoplasmic portion of the Toll receptor and required Tube and Pelle to activate the expression of the antifungal peptide Drosomycin.

Go back
411.0, 344.0
25.0, 25.0

p14

p14

cso30:i:ME_Binding

cso30:i:CC_Cytosol

--

true true true true

--

and

mass

coefficient1:0.1
coefficient2:1.0
stoichiometry:c44 : 1
stoichiometry:c41 : 1
stoichiometry:c54 : 1
stoichiometry:c45 : 1

m1626*m25*0.1

nodelay

--

true

0

false

PMID: 16785490, 10589682, 7527496 It is apparent that Tube does bind directly to Pelle both in vivo and in vitro. PMID: 1785490 Pelle is known to autophosphorylate, and this occurrence prevents association with Toll and Tube.

Go back
298.0, 420.0
25.0, 25.0

p15

p15

cso30:i:ME_Binding

cso30:i:CC_Cytosol

--

true true true true

--

and

mass

coefficient1:0.1
coefficient2:1.0
stoichiometry:c46 : 1
stoichiometry:c49 : 1
stoichiometry:c55 : 1
stoichiometry:c51 : 1

m26*m28*0.1

nodelay

--

true

0

false

PMID: 16785490 They went on to further show that the DD of Tube is sufficient to mediate the association of full-length dMyD88 and Pelle. PMID: 1785490 Pelle is known to autophosphorylate, and this occurrence prevents association with Toll and Tube.

Go back
302.0, 372.0
25.0, 25.0

p16

p16

cso30:i:ME_Binding

cso30:i:CC_Cytosol

--

true true true true

--

and

mass

coefficient1:0.1
coefficient2:1.0
stoichiometry:c48 : 1
stoichiometry:c47 : 1
stoichiometry:c50 : 1

m29*m313521*0.1

nodelay

--

true

0

false

PMID: 16785490, 11743586 Drosophila MyD88 (dMyD88) was found to associate directly with the cytoplasmic portion of the Toll receptor and required Tube and Pelle to activate the expression of the antifungal peptide Drosomycin.

Go back
467.0, 440.0
25.0, 25.0

p17

p17

cso30:i:ME_Dimerization

cso30:i:CC_Cytosol

--

true true true true

--

and

mass

coefficient1:0.1
coefficient2:1.0
stoichiometry:c39 : 1
stoichiometry:c43 : 1

m1626*0.1

nodelay

--

true

0

false

PMID: 16785490, 9806920 Autophosphorylation takes place at the Pelle DD and has been proposed to occur subsequent to Pelle dimerization.

Go back
414.0, 491.0
27.0, 27.0

p18

p18

cso30:i:ME_Autophosphorylation

cso30:i:CC_Cytosol

--

true true true true

--

and

mass

coefficient1:0.1
coefficient2:1.0
stoichiometry:c52 : 1
stoichiometry:c53 : 1

m31*0.1

nodelay

--

true

0

false

PMID: 16785490, 9806920 Autophosphorylation takes place at the Pelle DD and has been proposed to occur subsequent to Pelle dimerization.

Go back
295.0, 312.0
25.0, 25.0

p19

p19

cso30:i:ME_Binding

cso30:i:CC_Cytosol

--

true true true true

--

and

mass

coefficient1:0.1
coefficient2:1.0
stoichiometry:c60 : 1
stoichiometry:c61 : 1
stoichiometry:c62 : 1

m1572*m13*0.1

nodelay

--

true

0

false

PMID: 16785490 TLR2 and 4 are known to be able to associate with multiple adaptors, including MyD88 and Tirap/Mal.

Go back
652.0, 149.0
24.0, 24.0

p2

p2

cso30:i:ME_Binding

cso30:i:CC_Cytosol

--

true true true true

--

and

mass

coefficient1:0.1
coefficient2:1.0
stoichiometry:c4 : 1
stoichiometry:c5 : 1
stoichiometry:c7 : 1
stoichiometry:c56 : 1
stoichiometry:c6 : 1

m12*m184*m17258*0.1

nodelay

--

true

0

false

PMID: 16785490, 12538665 The universal adaptor protein, MyD88, serves to recruit a family of kinases known as the IL-1R-associated kinases (IRAKs) (2), eventually culminating in the activation of NF-kappaB and the production of proinflammatory cytokines. PMID: 16785490, 12538665 To mediate TLR/IL-1R signaling, IRAK-4 associates with the intermediate domain (ID) of the adaptor MyD88 presumably via its own DD. PMID: 16785490 IRAK-1, on the other hand, associates with the DD of MyD88 effectively poised for phosphorylation by IRAK-4. IRAK-1, on the other hand, associates with the DD of MyD88 effectively poised for phosphorylation by IRAK-4. PMID: 16785490, 12538665 A splice variant of MyD88 (MyD88s), missing the intermediate domain, has been shown to shut down IL-1/LPS-induced NF-kappaB activation by interfering with IRAK-4 association.

Go back
356.0, 152.0
23.0, 23.0

p20

p20

cso30:i:ME_Binding

cso30:i:CC_Cytosol

--

true true true true

--

and

mass

coefficient1:0.1
coefficient2:1.0
stoichiometry:c63 : 1
stoichiometry:c64 : 1
stoichiometry:c65 : 1

m43675*m34*0.1

nodelay

--

true

0

false

PMID: 16785490 TLR2 and 4 are known to be able to associate with multiple adaptors, including MyD88 and Tirap/Mal.

Go back
311.0, 119.0
25.0, 25.0

p21

p21

cso30:i:ME_Binding

cso30:i:CC_Cytosol

--

true true true true

--

and

mass

coefficient1:0.1
coefficient2:1.0
stoichiometry:c66 : 1
stoichiometry:c67 : 1
stoichiometry:c68 : 1

m35*m1572*0.1

nodelay

--

true

0

false

PMID: 16785490 TLR2 and 4 are known to be able to associate with multiple adaptors, including MyD88 and Tirap/Mal.

Go back
284.0, 141.0
23.0, 23.0

p3

p3

cso30:i:ME_Binding

cso30:i:CC_Cytosol

--

true true true true

--

and

mass

coefficient1:0.1
coefficient2:1.0
stoichiometry:c8 : 1
stoichiometry:c9 : 1
stoichiometry:c10 : 1

m3964*m3963*0.1

nodelay

--

true

0

false

PMID: 16785490, 12437972 In addition to the importance of maintaining the structural integrity of the bb and dd loops, it has also been proposed that dimerization of the TLR2 TIR domain is vital for downstream signaling to occur.

Go back
155.0, 172.0
25.0, 25.0

p4

p4

cso30:i:ME_Binding

cso30:i:CC_Extracellular

--

true true true true

--

and

mass

coefficient1:0.1
coefficient2:1.0
stoichiometry:c11 : 1
stoichiometry:c12 : 1
stoichiometry:c13 : 1

m18*m155701*0.1

nodelay

--

true

0

false

PMID: 16785490, 12437972 In addition to the importance of maintaining the structural integrity of the bb and dd loops, it has also been proposed that dimerization of the TLR2 TIR domain is vital for downstream signaling to occur.

Go back
710.0, 147.0
27.0, 27.0

p5

p5

cso30:i:ME_Phosphorylation

cso30:i:CC_Cytosol

--

true true true true

--

and

mass

coefficient1:0.1
coefficient2:1.0
stoichiometry:c14 : 1
stoichiometry:c58 : 1
stoichiometry:c15 : 1

m5*0.1

nodelay

--

true

0

false

PMID: 16785490 IRAK-4 is a unique member of the IRAK family in that it is the only member to have true kinase activity (i.e., phosphorylates substrates other than itself) and it is also the most homologous to Pelle. PMID: 16785490 IRAK-1, on the other hand, associates with the DD of MyD88 effectively poised for phosphorylation by IRAK-4. IRAK-1, on the other hand, associates with the DD of MyD88 effectively poised for phosphorylation by IRAK-4. PMID: 16785490 This phosphorylation most likely takes place on the activation loop of IRAK-1 (within the kinase domain) on residues T387 and S376. PMID: 16785490, 9261174 Also, in the presence of MyD88s, IRAK-1 is not phosphorylated or subsequently ubiquitinated as in the normal signaling cascade.

Go back
758.0, 131.0
27.0, 27.0

p6

p6

cso30:i:ME_Phosphorylation

cso30:i:CC_Cytosol

--

true true true true

--

and

mass

coefficient1:0.1
coefficient2:1.0
stoichiometry:c16 : 1
stoichiometry:c59 : 1
stoichiometry:c17 : 1

m14*0.1

nodelay

--

true

0

false

PMID: 16785490, 11960013, 11937546, 11287640 Once this phosphorylation event occurs, IRAK-1 kinase activity increases and it heavily autophosphorylates residues in its amino terminus. PMID: 16785490, 9261174 Also, in the presence of MyD88s, IRAK-1 is not phosphorylated or subsequently ubiquitinated as in the normal signaling cascade.

Go back
711.0, 400.0
26.0, 26.0

p7

p7

cso30:i:ME_UnknownActivation

cso30:i:CC_Cytosol

--

true true true true

--

and

mass

coefficient1:0.1
coefficient2:1.0
stoichiometry:c18 : 1
stoichiometry:c20 : 1
stoichiometry:c35 : 1
stoichiometry:c57 : 1
stoichiometry:c19 : 1

m24*m15*0.1

nodelay

--

true

0

false

PMID: 16785490, 12538665 The universal adaptor protein, MyD88, serves to recruit a family of kinases known as the IL-1R-associated kinases (IRAKs) (2), eventually culminating in the activation of NF-kappaB and the production of proinflammatory cytokines. PMID: 16785490 In fact, a vaccinia virus immune evasion strategy using a TIR domain-containing viral protein, A46R, targets MyD88, Tirap/Mal, Trif/Ticam, and TRAM and interferes with the downstream activation of MAP kinases and NF-kappaB. PMID: 16785490, 12538665 A splice variant of MyD88 (MyD88s), missing the intermediate domain, has been shown to shut down IL-1/LPS-induced NF-kappaB activation by interfering with IRAK-4 association.

Go back
658.0, 603.0
27.0, 27.0

p8

p8

cso30:i:ME_Translation

cso30:i:CC_Cytosol

--

true true true true

--

and

mass

coefficient1:0.1
coefficient2:1.0
stoichiometry:c22 : 1
stoichiometry:c26 : 1
stoichiometry:c21 : 1

m23*m11*0.1

nodelay

--

true

0

false

PMID: 16785490, 12538665 The universal adaptor protein, MyD88, serves to recruit a family of kinases known as the IL-1R-associated kinases (IRAKs) (2), eventually culminating in the activation of NF-kappaB and the production of proinflammatory cytokines.

Go back
295.0, 260.0
25.0, 25.0

p9

p9

cso30:i:ME_Binding

cso30:i:CC_Cytosol

--

true true true true

--

and

mass

coefficient1:0.1
coefficient2:1.0
stoichiometry:c23 : 1
stoichiometry:c24 : 1
stoichiometry:c25 : 1

m17*m43675*0.1

nodelay

--

true

0

false

PMID: 16785490 TLR2 and 4 are known to be able to associate with multiple adaptors, including MyD88 and Tirap/Mal.

Go back
574.0, 114.0

c1

c1

cso30:c:InputProcess

--

true true true true

cso30:c:InputProcess

threshold

--

0

1,

--

Go back
273.5357429061181, 161.0

c10

c10

cso30:c:OutputProcess

--

true true true true

cso30:c:OutputProcess

threshold

--

0

1,

--

Go back
188.0, 185.0

c11

c11

cso30:c:InputProcess

--

true true true true

cso30:c:InputProcess

threshold

--

0

1,

--

Go back
168.0, 205.0

c12

c12

cso30:c:InputProcess

--

true true true true

cso30:c:InputProcess

threshold

--

0

1,

--

Go back
180.0, 191.0

c13

c13

cso30:c:OutputProcess

--

true true true true

cso30:c:OutputProcess

threshold

--

0

1,

--

Go back
680.0, 103.0

c14

c14

cso30:c:InputProcess

--

true true true true

cso30:c:InputProcess

threshold

--

0

1,

--

Go back
724.0, 100.0

c15

c15

cso30:c:OutputProcess

--

true true true true

cso30:c:OutputProcess

threshold

--

0

1,

--

Go back
738.0, 92.0

c16

c16

cso30:c:InputProcess

--

true true true true

cso30:c:InputProcess

threshold

--

0

1,

--

Go back
772.0, 158.0

c17

c17

cso30:c:OutputProcess

--

true true true true

cso30:c:OutputProcess

threshold

--

0

1,

--

Go back
677.0, 413.0

c18

c18

cso30:c:InputProcess

--

true true true true

cso30:c:InputProcess

threshold

--

0

1,

--

Go back
683.5357429061181, 422.0

c19

c19

cso30:c:OutputProcess

--

true true true true

cso30:c:OutputProcess

threshold

--

0

1,

--

Go back
575.0, 161.0

c2

c2

cso30:c:InputProcess

--

true true true true

cso30:c:InputProcess

threshold

--

0

1,

--

Go back
728.8945311251241, 240.0

c20

c20

cso30:c:InputAssociation

--

true true true true

cso30:c:InputAssociation

threshold

--

0

1,

--

Go back
685.0, 617.0

c21

c21

cso30:c:OutputProcess

--

true true true true

cso30:c:OutputProcess

threshold

--

0

1,

--

Go back
607.0, 617.3134845335628

c22

c22

cso30:c:InputAssociation

--

true true true true

cso30:c:InputAssociation

threshold

--

0

1,

--

Go back
267.0, 238.0

c23

c23

cso30:c:InputProcess

--

true true true true

cso30:c:InputProcess

threshold

--

0

1,

--

Go back
327.99632943316306, 272.0

c24

c24

cso30:c:InputProcess

--

true true true true

cso30:c:InputProcess

threshold

--

0

1,

--

Go back
275.0, 273.0

c25

c25

cso30:c:OutputProcess

--

true true true true

cso30:c:OutputProcess

threshold

--

0

1,

--

Go back
665.0, 468.0

c26

c26

cso30:c:InputAssociation

--

true true true true

cso30:c:InputAssociation

threshold

--

0

1,

--

Go back
492.0, 175.0

c27

c27

cso30:c:InputProcess

--

true true true true

cso30:c:InputProcess

threshold

--

0

1,

--

Go back
502.9364580533432, 176.0

c28

c28

cso30:c:InputProcess

--

true true true true

cso30:c:InputProcess

threshold

--

0

1,

--

Go back
504.0, 281.0

c29

c29

cso30:c:OutputProcess

--

true true true true

cso30:c:OutputProcess

threshold

--

0

1,

--

Go back
612.0, 122.0

c3

c3

cso30:c:OutputProcess

--

true true true true

cso30:c:OutputProcess

threshold

--

0

1,

--

Go back
682.0, 298.1214751973158

c30

c30

cso30:c:InputProcess

--

true true true true

cso30:c:InputProcess

threshold

--

0

1,

--

Go back
681.3071142168176, 294.0

c31

c31

cso30:c:OutputProcess

--

true true true true

cso30:c:OutputProcess

threshold

--

0

1,

--

Go back
726.6568542494924, 233.0

c32

c32

cso30:c:InputAssociation

--

true true true true

cso30:c:InputAssociation

threshold

--

0

1,

--

Go back
612.0, 177.0

c33

c33

cso30:c:InputInhibitor

--

true true true true

cso30:c:InputInhibitor

threshold

--

0

1,

--

Go back
627.0, 281.0

c34

c34

cso30:c:InputInhibitor

--

true true true true

cso30:c:InputInhibitor

threshold

--

0

1,

--

Go back
627.0, 298.0

c35

c35

cso30:c:InputInhibitor

--

true true true true

cso30:c:InputInhibitor

threshold

--

0

1,

--

Go back
422.9902101668113, 86.0

c36

c36

cso30:c:InputProcess

--

true true true true

cso30:c:InputProcess

threshold

--

0

1,

--

Go back
435.0, 164.0

c37

c37

cso30:c:InputProcess

--

true true true true

cso30:c:InputProcess

threshold

--

0

1,

--

Go back
416.0, 107.0

c38

c38

cso30:c:OutputProcess

--

true true true true

cso30:c:OutputProcess

threshold

--

0

1,

--

Go back
480.0, 408.0

c39

c39

cso30:c:InputProcess

--

true true true true

cso30:c:InputProcess

threshold

--

0

1,

--

Go back
628.0, 113.0

c4

c4

cso30:c:InputProcess

--

true true true true

cso30:c:InputProcess

threshold

--

0

1,

--

Go back
449.0, 596.0

c40

c40

cso30:c:OutputProcess

--

true true true true

cso30:c:OutputProcess

threshold

--

0

1,

--

Go back
444.0, 357.0

c41

c41

cso30:c:InputProcess

--

true true true true

cso30:c:InputProcess

threshold

--

0

1,

--

Go back
267.0, 498.0

c42

c42

cso30:c:InputAssociation

--

true true true true

cso30:c:InputAssociation

threshold

--

0

1,

--

Go back
480.0, 465.0

c43

c43

cso30:c:OutputProcess

--

true true true true

cso30:c:OutputProcess

threshold

--

0

1,

--

Go back
442.4961229707417, 370.6690883852206

c44

c44

cso30:c:InputProcess

--

true true true true

cso30:c:InputProcess

threshold

--

0

1,

--

Go back
424.0, 369.0

c45

c45

cso30:c:OutputProcess

--

true true true true

cso30:c:OutputProcess

threshold

--

0

1,

--

Go back
331.0, 433.0

c46

c46

cso30:c:InputProcess

--

true true true true

cso30:c:InputProcess

threshold

--

0

1,

--

Go back
335.0, 385.0

c47

c47

cso30:c:InputProcess

--

true true true true

cso30:c:InputProcess

threshold

--

0

1,

--

Go back
263.0, 385.0

c48

c48

cso30:c:InputProcess

--

true true true true

cso30:c:InputProcess

threshold

--

0

1,

--

Go back
266.0, 433.0

c49

c49

cso30:c:InputProcess

--

true true true true

cso30:c:InputProcess

threshold

--

0

1,

--

Go back
640.0, 180.07030333077648

c5

c5

cso30:c:InputProcess

--

true true true true

cso30:c:InputProcess

threshold

--

0

1,

--

Go back
272.4, 395.0

c50

c50

cso30:c:OutputProcess

--

true true true true

cso30:c:OutputProcess

threshold

--

0

1,

--

Go back
272.84217130815114, 445.0

c51

c51

cso30:c:OutputProcess

--

true true true true

cso30:c:OutputProcess

threshold

--

0

1,

--

Go back
449.0, 505.0

c52

c52

cso30:c:InputProcess

--

true true true true

cso30:c:InputProcess

threshold

--

0

1,

--

Go back
399.0, 505.0

c53

c53

cso30:c:OutputProcess

--

true true true true

cso30:c:OutputProcess

threshold

--

0

1,

--

Go back
382.0, 372.8104394621336

c54

c54

cso30:c:InputInhibitor

--

true true true true

cso30:c:InputInhibitor

threshold

--

0

1,

--

Go back
324.69069117598525, 447.95976029358377

c55

c55

cso30:c:InputInhibitor

--

true true true true

cso30:c:InputInhibitor

threshold

--

0

1,

--

Go back
677.6532300572634, 175.99338775691257

c56

c56

cso30:c:InputInhibitor

--

true true true true

cso30:c:InputInhibitor

threshold

--

0

1,

--

Go back
724.0, 240.0

c57

c57

cso30:c:InputInhibitor

--

true true true true

cso30:c:InputInhibitor

threshold

--

0

1,

--

Go back
724.0, 178.0

c58

c58

cso30:c:InputInhibitor

--

true true true true

cso30:c:InputInhibitor

threshold

--

0

1,

--

Go back
731.0, 161.4657198598672

c59

c59

cso30:c:InputInhibitor

--

true true true true

cso30:c:InputInhibitor

threshold

--

0

1,

--

Go back
664.0, 112.0

c6

c6

cso30:c:OutputProcess

--

true true true true

cso30:c:OutputProcess

threshold

--

0

1,

--

Go back
327.9999837035076, 176.0

c60

c60

cso30:c:InputProcess

--

true true true true

cso30:c:InputProcess

threshold

--

0

1,

--

Go back
267.0, 287.0

c61

c61

cso30:c:InputProcess

--

true true true true

cso30:c:InputProcess

threshold

--

0

1,

--

Go back
275.0, 325.0

c62

c62

cso30:c:OutputProcess

--

true true true true

cso30:c:OutputProcess

threshold

--

0

1,

--

Go back
368.0, 183.0

c63

c63

cso30:c:InputProcess

--

true true true true

cso30:c:InputProcess

threshold

--

0

1,

--

Go back
368.0, 74.0

c64

c64

cso30:c:InputProcess

--

true true true true

cso30:c:InputProcess

threshold

--

0

1,

--

Go back
336.352465419694, 94.26367507600361

c65

c65

cso30:c:OutputProcess

--

true true true true

cso30:c:OutputProcess

threshold

--

0

1,

--

Go back
324.0, 87.0

c66

c66

cso30:c:InputProcess

--

true true true true

cso30:c:InputProcess

threshold

--

0

1,

--

Go back
343.99998064252867, 132.01759883992244

c67

c67

cso30:c:InputProcess

--

true true true true

cso30:c:InputProcess

threshold

--

0

1,

--

Go back
278.3409919128368, 96.87768608679754

c68

c68

cso30:c:OutputProcess

--

true true true true

cso30:c:OutputProcess

threshold

--

0

1,

--

Go back
664.0, 181.0

c7

c7

cso30:c:InputProcess

--

true true true true

cso30:c:InputProcess

threshold

--

0

1,

--

Go back
264.0, 153.0

c8

c8

cso30:c:InputProcess

--

true true true true

cso30:c:InputProcess

threshold

--

0

1,

--

Go back
259.0, 125.0

c9

c9

cso30:c:InputProcess

--

true true true true

cso30:c:InputProcess

threshold

--

0

1,

--

Go back