Original Literature | Model OverView |
---|---|
Publication
Title
Intracellular TLR signaling: a structural perspective on human disease.
Affiliation
Department of Biochemistry, University of Illinois at Urbana-Champaign, 600South Mathews Avenue, Urbana, IL 61801, USA. lasker@uiuc.edu
Abstract
TLRs are crucial sensors of microbial infection. Maintaining structuralintegrity of TLR signaling components is essential for subsequent immunologicalprotection. Alterations to the structure of these signaling molecules are oftenassociated with profound clinical outcomes and susceptibility to variousinfectious diseases. These changes in structure are sometimes the result of asingle nucleotide polymorphism (SNP). Numerous SNPs have been found incomponents of the TLR signaling pathway. Recently, the medical consequences andeffects on TLR signaling of several of these SNPs have been elucidated. Inaddition, there have been numerous structures solved that are important to ourunderstanding of the TLR signaling pathway at the molecular level. The scope ofthis review is to tie together current structural, biochemical, and geneticinformation of TLR signaling.
PMID
16785490
|
Entity
MyD88
--
MO000016573
cso30:c:Protein
cso30:i:CC_CellComponent
--
csml-variable:Double
m1572
10
infinite
0
InterPro | IPR000157 |
TRANSPATH | MO000016573 |
--
pelle(d)
--
MO000016642
cso30:c:Protein
cso30:i:CC_CellComponent
--
csml-variable:Double
m1626
10
infinite
0
BRENDA | 2.7.1.37 |
flybase | FBgn0010441 |
InterPro | IPR000719 |
TRANSPATH | MO000016642 |
UniProt | Q05652 |
--
csml-variable:Double
m3961
10
infinite
0
--
csml-variable:Double
m3963
10
infinite
0
--
csml-variable:Double
m3964
10
infinite
0
--
--
e1
cso30:c:EntityBiologicalCompartment
cso30:i:CC_PlasmaMembrane
--
--
--
csml-variable:Double
m1
0
infinite
0
--
--
e10
cso30:c:EntityBiologicalCompartment
cso30:i:CC_Cytosol
--
--
--
csml-variable:Double
m10
0
infinite
0
--
NF-kappaB{activated}
--
e11
cso30:c:Protein
cso30:i:CC_CellComponent
--
csml-variable:Double
m11
10
infinite
0
TRANSPATH | MO000000058 |
--
Ligand: TLR: MyD88
--
e12
cso30:c:Complex
cso30:i:CC_PlasmaMembrane_IntegralToPlasmaMembrane_
--
csml-variable:Double
m12
0
infinite
0
--
PGN: TLR2: TLR1: MAL
--
e13
cso30:c:Complex
cso30:i:CC_PlasmaMembrane_IntegralToPlasmaMembrane_
--
csml-variable:Double
m13
0
infinite
0
--
Ligand: TLR: MyD88: IRAK-1{p}: IRAK-4
--
e14
cso30:c:Complex
cso30:i:CC_PlasmaMembrane_IntegralToPlasmaMembrane_
--
csml-variable:Double
m14
0
infinite
0
--
Ligand: TLR: MyD88: IRAK-1{p}: IRAK-4
--
e15
cso30:c:Complex
cso30:i:CC_PlasmaMembrane_IntegralToPlasmaMembrane_
--
csml-variable:Double
m15
0
infinite
0
--
A46R
--
e16
cso30:c:Protein
cso30:i:CC_Extracellular
--
csml-variable:Double
m16
0
infinite
0
--
PGN: TLR2: TLR1
--
e17
cso30:c:Complex
cso30:i:CC_PlasmaMembrane_InternalSideOfPlasmaMembrane_
--
csml-variable:Double
m17
0
infinite
0
--
TLR2: TLR1
--
e18
cso30:c:Protein
cso30:i:CC_PlasmaMembrane_IntegralToPlasmaMembrane_
--
csml-variable:Double
m18
0
infinite
0
--
A46R: MyD88
--
e19
cso30:c:Complex
cso30:i:CC_Cytosol
--
csml-variable:Double
m19
0
infinite
0
--
--
e2
cso30:c:EntityBiologicalCompartment
cso30:i:CC_PlasmaMembrane_ExternalSideOfPlasmaMembrane_
--
--
--
csml-variable:Double
m2
0
infinite
0
--
A46R: TLR4
--
e21
cso30:c:Complex
cso30:i:CC_Cytosol
--
--
csml-variable:Double
m21
0
infinite
0
--
csml-variable:Double
m22
0
infinite
0
--
cytokine
--
e23
cso30:c:mRNA
cso30:i:CC_Nucleoplasm
--
--
csml-variable:Double
m23
0
infinite
0
--
Tube
--
e24
cso30:c:Protein
cso30:i:CC_Cytosol
--
--
csml-variable:Double
m25
0
infinite
0
--
Tube: pelle(d)
--
e25
cso30:c:Complex
cso30:i:CC_Cytosol
--
csml-variable:Double
m26
0
infinite
0
--
MyD88s
--
e26
cso30:c:Protein
cso30:i:CC_Cytosol
--
csml-variable:Double
m27
0
infinite
0
--
ligand: Toll receptor: MyD88(d)
--
e27
cso30:c:Complex
cso30:i:CC_PlasmaMembrane_IntegralToPlasmaMembrane_
--
csml-variable:Double
m28
0
infinite
0
--
ligand: Toll receptor
--
e28
cso30:c:Complex
cso30:i:CC_PlasmaMembrane_IntegralToPlasmaMembrane_
--
--
csml-variable:Double
m29
0
infinite
0
--
ligand: Toll receptor: MyD88(d): Tube: pelle(d)
--
e29
cso30:c:Complex
cso30:i:CC_PlasmaMembrane_IntegralToPlasmaMembrane_
--
csml-variable:Double
m30
0
infinite
0
--
--
e3
cso30:c:EntityBiologicalCompartment
cso30:i:CC_PlasmaMembrane_IntegralToPlasmaMembrane_
--
--
--
csml-variable:Double
m3
0
infinite
0
--
pelle: pelle(d)
--
e30
cso30:c:Complex
cso30:i:CC_Cytosol
--
csml-variable:Double
m31
0
infinite
0
--
pelle: pelle(d){p}
--
e31
cso30:c:Complex
cso30:i:CC_Cytosol
--
csml-variable:Double
m32
0
infinite
0
--
PGN: TLR2: TLR1: MAL: MyD88
--
e32
cso30:c:Complex
cso30:i:CC_PlasmaMembrane_IntegralToPlasmaMembrane_
--
--
csml-variable:Double
m33
0
infinite
0
--
LPS: TLR4
--
e33
cso30:c:Complex
cso30:i:CC_PlasmaMembrane_IntegralToPlasmaMembrane_
--
--
csml-variable:Double
m34
0
infinite
0
--
LPS: TLR4: MAL
--
e34
cso30:c:Complex
cso30:i:CC_PlasmaMembrane_IntegralToPlasmaMembrane_
--
csml-variable:Double
m35
0
infinite
0
--
LPS: TLR4: MAL: MyD88
--
e35
cso30:c:Complex
cso30:i:CC_PlasmaMembrane_IntegralToPlasmaMembrane_
--
--
csml-variable:Double
m36
0
infinite
0
--
--
e4
cso30:c:EntityBiologicalCompartment
cso30:i:CC_PlasmaMembrane_InternalSideOfPlasmaMembrane_
--
--
--
csml-variable:Double
m4
0
infinite
0
--
Ligand: TLR: MyD88: IRAK-1: IRAK-4
--
e5
cso30:c:Complex
cso30:i:CC_PlasmaMembrane_InternalSideOfPlasmaMembrane_
--
csml-variable:Double
m5
0
infinite
0
--
--
e50
cso30:c:EntityBiologicalCompartment
cso30:i:CC_NuclearEnvelopeLumen
--
--
--
csml-variable:Double
m50
0
infinite
0
--
--
e51
cso30:c:EntityBiologicalCompartment
cso30:i:CC_NuclearPore
--
--
--
csml-variable:Double
m51
0
infinite
0
--
--
e52
cso30:c:EntityBiologicalCompartment
cso30:i:CC_NuclearInnerMembrane
--
--
--
csml-variable:Double
m52
0
infinite
0
--
--
e53
cso30:c:EntityBiologicalCompartment
cso30:i:CC_NuclearLumen
--
--
--
csml-variable:Double
m53
0
infinite
0
--
--
e54
cso30:c:EntityBiologicalCompartment
cso30:i:CC_NuclearOuterMembrane
--
--
--
csml-variable:Double
m54
0
infinite
0
--
--
e55
cso30:c:EntityBiologicalCompartment
cso30:i:CC_Nucleus
--
--
--
csml-variable:Double
m55
0
infinite
0
--
--
e56
cso30:c:EntityBiologicalCompartment
cso30:i:CC_Nucleoplasm
--
--
--
csml-variable:Double
m56
0
infinite
0
--
--
e57
cso30:c:EntityBiologicalCompartment
cso30:i:CC_NuclearBody
--
--
--
csml-variable:Double
m57
0
infinite
0
--
--
e58
cso30:c:EntityBiologicalCompartment
cso30:i:CC_Nucleolus
--
--
--
csml-variable:Double
m58
0
infinite
0
--
--
e59
cso30:c:EntityBiologicalCompartment
cso30:i:CC_NuclearEnvelope
--
--
--
csml-variable:Double
m59
0
infinite
0
--
Ligand: TLR
--
e6
cso30:c:Complex
cso30:i:CC_Cytosol
--
--
csml-variable:Double
m6
0
infinite
0
--
--
e60
cso30:c:EntityBiologicalCompartment
cso30:i:CC_Chromatin
--
--
--
csml-variable:Double
m60
0
infinite
0
--
--
e61
cso30:c:EntityBiologicalCompartment
cso30:i:CC_NuclearChromosome
--
--
--
csml-variable:Double
m61
0
infinite
0
--
--
e62
cso30:c:EntityBiologicalCompartment
cso30:i:CC_NuclearCentromere
--
--
--
csml-variable:Double
m62
0
infinite
0
--
--
e7
cso30:c:EntityBiologicalCompartment
cso30:i:CC_Cell
--
--
--
csml-variable:Double
m7
0
infinite
0
--
--
e8
cso30:c:EntityBiologicalCompartment
cso30:i:CC_Cell_WithoutCellWall_
--
--
--
csml-variable:Double
m8
0
infinite
0
--
--
e9
cso30:c:EntityBiologicalCompartment
cso30:i:CC_Cytoplasm
--
--
--
csml-variable:Double
m9
0
infinite
0
--
--
and
mass
coefficient1:0.1
coefficient2:1.0
stoichiometry:c1 : 1
stoichiometry:c2 : 1
stoichiometry:c33 : 1
stoichiometry:c3 : 1
m6*m1572*0.1
nodelay
--
0
PMID: 16785490, 12810098 The TIR domain of the TLR interacts with a set of TIR domain-containing adaptor proteins. PMID: 16785490, 11743586 Drosophila MyD88 (dMyD88) was found to associate directly with the cytoplasmic portion of the Toll receptor and required Tube and Pelle to activate the expression of the antifungal peptide Drosomycin.
--
and
mass
coefficient1:0.1
coefficient2:1.0
stoichiometry:c27 : 1
stoichiometry:c28 : 1
stoichiometry:c29 : 1
m16*m1572*0.1
nodelay
--
0
PMID: 16785490 In this study, A46R was shown to directly associate with MyD88 and inhibit MyD88 dependent signaling by both IL-1R and TLRs, presumably by interacting via its TIR domain.
p11
p11
cso30:i:ME_UnknownActivation
cso30:i:CC_Cytosol
--
--
and
mass
coefficient1:0.1
coefficient2:1.0
stoichiometry:c30 : 1
stoichiometry:c32 : 1
stoichiometry:c34 : 1
stoichiometry:c31 : 1
m69*m15*0.1
nodelay
--
0
PMID: 16785490 In fact, a vaccinia virus immune evasion strategy using a TIR domain-containing viral protein, A46R, targets MyD88, Tirap/Mal, Trif/Ticam, and TRAM and interferes with the downstream activation of MAP kinases and NF-kappaB.
--
and
mass
coefficient1:0.1
coefficient2:1.0
stoichiometry:c36 : 1
stoichiometry:c37 : 1
stoichiometry:c38 : 1
m3961*m16*0.1
nodelay
--
0
PMID: 16785490 Interestingly, the A46R protein was also able to be immunoprecipitated with TLR4 itself suggesting that the TIR domain of TLR4 might also be a target.
--
and
mass
coefficient1:0.1
coefficient2:1.0
stoichiometry:c42 : 1
stoichiometry:c40 : 1
m30*0.1
nodelay
--
0
PMID: 16785490, 11743586 Drosophila MyD88 (dMyD88) was found to associate directly with the cytoplasmic portion of the Toll receptor and required Tube and Pelle to activate the expression of the antifungal peptide Drosomycin.
--
and
mass
coefficient1:0.1
coefficient2:1.0
stoichiometry:c44 : 1
stoichiometry:c41 : 1
stoichiometry:c54 : 1
stoichiometry:c45 : 1
m1626*m25*0.1
nodelay
--
0
PMID: 16785490, 10589682, 7527496 It is apparent that Tube does bind directly to Pelle both in vivo and in vitro. PMID: 1785490 Pelle is known to autophosphorylate, and this occurrence prevents association with Toll and Tube.
--
and
mass
coefficient1:0.1
coefficient2:1.0
stoichiometry:c46 : 1
stoichiometry:c49 : 1
stoichiometry:c55 : 1
stoichiometry:c51 : 1
m26*m28*0.1
nodelay
--
0
PMID: 16785490 They went on to further show that the DD of Tube is sufficient to mediate the association of full-length dMyD88 and Pelle. PMID: 1785490 Pelle is known to autophosphorylate, and this occurrence prevents association with Toll and Tube.
--
and
mass
coefficient1:0.1
coefficient2:1.0
stoichiometry:c48 : 1
stoichiometry:c47 : 1
stoichiometry:c50 : 1
m29*m313521*0.1
nodelay
--
0
PMID: 16785490, 11743586 Drosophila MyD88 (dMyD88) was found to associate directly with the cytoplasmic portion of the Toll receptor and required Tube and Pelle to activate the expression of the antifungal peptide Drosomycin.
--
and
mass
coefficient1:0.1
coefficient2:1.0
stoichiometry:c39 : 1
stoichiometry:c43 : 1
m1626*0.1
nodelay
--
0
PMID: 16785490, 9806920 Autophosphorylation takes place at the Pelle DD and has been proposed to occur subsequent to Pelle dimerization.
--
and
mass
coefficient1:0.1
coefficient2:1.0
stoichiometry:c52 : 1
stoichiometry:c53 : 1
m31*0.1
nodelay
--
0
PMID: 16785490, 9806920 Autophosphorylation takes place at the Pelle DD and has been proposed to occur subsequent to Pelle dimerization.
--
and
mass
coefficient1:0.1
coefficient2:1.0
stoichiometry:c60 : 1
stoichiometry:c61 : 1
stoichiometry:c62 : 1
m1572*m13*0.1
nodelay
--
0
PMID: 16785490 TLR2 and 4 are known to be able to associate with multiple adaptors, including MyD88 and Tirap/Mal.
p2
p2
cso30:i:ME_Binding
cso30:i:CC_Cytosol
--
--
and
mass
coefficient1:0.1
coefficient2:1.0
stoichiometry:c4 : 1
stoichiometry:c5 : 1
stoichiometry:c7 : 1
stoichiometry:c56 : 1
stoichiometry:c6 : 1
m12*m184*m17258*0.1
nodelay
--
0
PMID: 16785490, 12538665 The universal adaptor protein, MyD88, serves to recruit a family of kinases known as the IL-1R-associated kinases (IRAKs) (2), eventually culminating in the activation of NF-kappaB and the production of proinflammatory cytokines. PMID: 16785490, 12538665 To mediate TLR/IL-1R signaling, IRAK-4 associates with the intermediate domain (ID) of the adaptor MyD88 presumably via its own DD. PMID: 16785490 IRAK-1, on the other hand, associates with the DD of MyD88 effectively poised for phosphorylation by IRAK-4. IRAK-1, on the other hand, associates with the DD of MyD88 effectively poised for phosphorylation by IRAK-4. PMID: 16785490, 12538665 A splice variant of MyD88 (MyD88s), missing the intermediate domain, has been shown to shut down IL-1/LPS-induced NF-kappaB activation by interfering with IRAK-4 association.
--
and
mass
coefficient1:0.1
coefficient2:1.0
stoichiometry:c63 : 1
stoichiometry:c64 : 1
stoichiometry:c65 : 1
m43675*m34*0.1
nodelay
--
0
PMID: 16785490 TLR2 and 4 are known to be able to associate with multiple adaptors, including MyD88 and Tirap/Mal.
--
and
mass
coefficient1:0.1
coefficient2:1.0
stoichiometry:c66 : 1
stoichiometry:c67 : 1
stoichiometry:c68 : 1
m35*m1572*0.1
nodelay
--
0
PMID: 16785490 TLR2 and 4 are known to be able to associate with multiple adaptors, including MyD88 and Tirap/Mal.
--
and
mass
coefficient1:0.1
coefficient2:1.0
stoichiometry:c8 : 1
stoichiometry:c9 : 1
stoichiometry:c10 : 1
m3964*m3963*0.1
nodelay
--
0
PMID: 16785490, 12437972 In addition to the importance of maintaining the structural integrity of the bb and dd loops, it has also been proposed that dimerization of the TLR2 TIR domain is vital for downstream signaling to occur.
--
and
mass
coefficient1:0.1
coefficient2:1.0
stoichiometry:c11 : 1
stoichiometry:c12 : 1
stoichiometry:c13 : 1
m18*m155701*0.1
nodelay
--
0
PMID: 16785490, 12437972 In addition to the importance of maintaining the structural integrity of the bb and dd loops, it has also been proposed that dimerization of the TLR2 TIR domain is vital for downstream signaling to occur.
--
and
mass
coefficient1:0.1
coefficient2:1.0
stoichiometry:c14 : 1
stoichiometry:c58 : 1
stoichiometry:c15 : 1
m5*0.1
nodelay
--
0
PMID: 16785490 IRAK-4 is a unique member of the IRAK family in that it is the only member to have true kinase activity (i.e., phosphorylates substrates other than itself) and it is also the most homologous to Pelle. PMID: 16785490 IRAK-1, on the other hand, associates with the DD of MyD88 effectively poised for phosphorylation by IRAK-4. IRAK-1, on the other hand, associates with the DD of MyD88 effectively poised for phosphorylation by IRAK-4. PMID: 16785490 This phosphorylation most likely takes place on the activation loop of IRAK-1 (within the kinase domain) on residues T387 and S376. PMID: 16785490, 9261174 Also, in the presence of MyD88s, IRAK-1 is not phosphorylated or subsequently ubiquitinated as in the normal signaling cascade.
--
and
mass
coefficient1:0.1
coefficient2:1.0
stoichiometry:c16 : 1
stoichiometry:c59 : 1
stoichiometry:c17 : 1
m14*0.1
nodelay
--
0
PMID: 16785490, 11960013, 11937546, 11287640 Once this phosphorylation event occurs, IRAK-1 kinase activity increases and it heavily autophosphorylates residues in its amino terminus. PMID: 16785490, 9261174 Also, in the presence of MyD88s, IRAK-1 is not phosphorylated or subsequently ubiquitinated as in the normal signaling cascade.
p7
p7
cso30:i:ME_UnknownActivation
cso30:i:CC_Cytosol
--
--
and
mass
coefficient1:0.1
coefficient2:1.0
stoichiometry:c18 : 1
stoichiometry:c20 : 1
stoichiometry:c35 : 1
stoichiometry:c57 : 1
stoichiometry:c19 : 1
m24*m15*0.1
nodelay
--
0
PMID: 16785490, 12538665 The universal adaptor protein, MyD88, serves to recruit a family of kinases known as the IL-1R-associated kinases (IRAKs) (2), eventually culminating in the activation of NF-kappaB and the production of proinflammatory cytokines. PMID: 16785490 In fact, a vaccinia virus immune evasion strategy using a TIR domain-containing viral protein, A46R, targets MyD88, Tirap/Mal, Trif/Ticam, and TRAM and interferes with the downstream activation of MAP kinases and NF-kappaB. PMID: 16785490, 12538665 A splice variant of MyD88 (MyD88s), missing the intermediate domain, has been shown to shut down IL-1/LPS-induced NF-kappaB activation by interfering with IRAK-4 association.
--
and
mass
coefficient1:0.1
coefficient2:1.0
stoichiometry:c22 : 1
stoichiometry:c26 : 1
stoichiometry:c21 : 1
m23*m11*0.1
nodelay
--
0
PMID: 16785490, 12538665 The universal adaptor protein, MyD88, serves to recruit a family of kinases known as the IL-1R-associated kinases (IRAKs) (2), eventually culminating in the activation of NF-kappaB and the production of proinflammatory cytokines.
--
and
mass
coefficient1:0.1
coefficient2:1.0
stoichiometry:c23 : 1
stoichiometry:c24 : 1
stoichiometry:c25 : 1
m17*m43675*0.1
nodelay
--
0
PMID: 16785490 TLR2 and 4 are known to be able to associate with multiple adaptors, including MyD88 and Tirap/Mal.
cso30:c:OutputProcess
threshold
--
0
1,
--
cso30:c:OutputProcess
threshold
--
0
1,
--
cso30:c:InputAssociation
threshold
--
0
1,
--
cso30:c:InputAssociation
threshold
--
0
1,
--
cso30:c:InputProcess
threshold
--
0
1,
--
cso30:c:InputAssociation
threshold
--
0
1,
--
cso30:c:InputProcess
threshold
--
0
1,
--
cso30:c:InputProcess
threshold
--
0
1,
--
cso30:c:OutputProcess
threshold
--
0
1,
--
cso30:c:InputAssociation
threshold
--
0
1,
--
cso30:c:InputProcess
threshold
--
0
1,
--
cso30:c:InputAssociation
threshold
--
0
1,
--
cso30:c:InputProcess
threshold
--
0
1,
--
cso30:c:InputProcess
threshold
--
0
1,
--
cso30:c:OutputProcess
threshold
--
0
1,
--
cso30:c:InputInhibitor
threshold
--
0
1,
--
cso30:c:InputInhibitor
threshold
--
0
1,
--
cso30:c:InputInhibitor
threshold
--
0
1,
--
cso30:c:InputInhibitor
threshold
--
0
1,
--
cso30:c:InputProcess
threshold
--
0
1,
--
cso30:c:OutputProcess
threshold
--
0
1,
--
cso30:c:InputProcess
threshold
--
0
1,
--
cso30:c:OutputProcess
threshold
--
0
1,
--