1. Information
    majorVersion:3 minorVersion:0 projectID:local projectVersionID:undef fileName:/home/ikeda/eclipse/workspace/macrophage/csml/ok/csml/16978691.csml convertedTime:2009.07.01.10:57

  2. Original Literature
  3. Model OverView
  4. Model Abstracts
  5. Model Detail
  6. Download
Original Literature Model OverView
Publication
Title The interrelated role of fibronectin and interleukin-1 in biomaterial-modulatedmacrophage function.
Authors Schmidt DR, Kao WJ.
Affiliation School of Pharmacy, University of Wisconsin-Madison, 777 Highland Ave., Madison,WI 53705, USA.
Abstract Macrophages play a critical role in mediating the host response to biomaterials,perhaps most notably by guiding the host inflammatory response through therelease of inflammatory molecules such as the cytokine interleukin-1 (IL-1). Theextent of the macrophage response following interaction with the biomaterialsurface contributes greatly to device efficacy, yet the molecular mechanisms ofthis interaction are still unclear. The extracellular matrix (ECM) proteinfibronectin (FN) is recognized by macrophages and frequently used in biomaterialmodification to elicit greater cellular adhesion and tissue integration.Macrophage interaction with FN and other ECM molecules on the biomaterialsurface has been shown to induce a variety of inflammatory responses, thus bothFN and IL-1 can be utilized as model molecules to better understand themechanisms of material-mediated macrophage responses. This literature reviewpresents a comprehensive survey of past and current research on the interrelatedrole of IL-1, FN, and FN-derivatives in determining biomaterial-modulatedmacrophage function.
PMID 16978691
Model Abstract

Entity

G010279:MMP-9 G010389:IL-1beta G010798:MMP-2 MO000000090:GM-CSFR MO000000099:GM-CSF MO000000289:TNF-alpha MO000016589:IL-1alpha MO000016595:IL-1RI MO000016596:IL-1RII MO000016597:IL-1beta MO000016598:IL-1RA MO000017426:fibrinogen MO000017549:fibronectin MO000018926:heparin MO000019449:proIL-1beta MO000039107:IL-1RI:IL-1RA MO000083632:collagen e1: e10:Beta1-integrin:Beta1-integrin antibody e11:IL-1RII e12:IL-1beta:IL-1RII e13:pro IL-1beta:IL-1RII e14:Fibronectin:Heparin e15:Fibronectin:collagen e16:Fibronectin:Fibrinogen e17:Cellular surface integrin receptors e18:Fibronectin:cellular surface integrin receptors e19:GM-CSF:GM-CSFR e2: e20:IL-1ra e21:TNF-alpha receptor e22:TNF-alpha:receptor e23:Bacteria e24:surface receptor e25:Bacteria:surface receptor e26:Beta1-integrin antibody e27:Beta1-integrin e28:pp76{p} e29:pp76 e3: e30:Anti Beta1-integrin e31:antibet3-integrin antibody e32:IL-1beta:IL-1RI e4: e5:ICE e50: e51: e52: e53: e54: e55: e56: e57: e58: e59: e6:Pro IL-1alpha e60: e61: e62: e7: e8: e9:

Process

p1 p10 p11 p12 p13 p14 p15 p16 p17 p18 p19 p2 p20 p21 p22 p23 p3 p4 p5 p6 p7 p8 p9
Model Detail
548.0, 687.0
30.0, 30.0

MMP-9

--

G010279

cso30:c:mRNA

cso30:i:CC_CellComponent

--

p22

--

true true true true

csml-variable:Double

m93262

10

false

infinite

0

unit false false false
TRANSFACG010279

--

Go back
506.0, 509.0
25.0, 25.0

IL-1beta

--

G010389

cso30:c:mRNA

cso30:i:CC_CellComponent

--

true true true true

csml-variable:Double

m93364

10

false

infinite

0

unit false false false
TRANSFACG010389

--

Go back
554.0, 613.0
26.0, 26.0

MMP-2

--

G010798

cso30:c:mRNA

cso30:i:CC_CellComponent

--

p21

--

true true true true

csml-variable:Double

m93698

10

false

infinite

0

unit false false false
TRANSFACG010798

--

Go back
1043.0, 242.0
24.0, 24.0

GM-CSFR

--

MO000000090

cso30:c:Protein

cso30:i:CC_CellComponent

--

--

p13

true true true true

csml-variable:Double

m81

10

false

infinite

0

unit false false false
TRANSPATHMO000000090

--

Go back
1124.0, 231.0
22.0, 22.0

GM-CSF

--

MO000000099

cso30:c:Protein

cso30:i:CC_CellComponent

--

--

p13

true true true true

csml-variable:Double

m88

10

false

infinite

0

unit false false false
InterProIPR000773
TRANSPATHMO000000099

--

Go back
1124.0, 363.0
22.0, 22.0

TNF-alpha

--

MO000000289

cso30:c:Protein

cso30:i:CC_CellComponent

--

--

p15

true true true true

csml-variable:Double

m230

10

false

infinite

0

unit false false false
InterProIPR003636
TRANSPATHMO000000289

--

Go back
128.0, 87.0
22.0, 22.0

IL-1alpha

--

MO000016589

cso30:c:Protein

cso30:i:CC_CellComponent

--

p2

--

true true true true

csml-variable:Double

m1584

10

false

infinite

0

unit false false false
InterProIPR008996
TRANSPATHMO000016589

--

Go back
189.0, 293.0
29.5, 29.5

IL-1RI

--

MO000016595

cso30:c:Protein

cso30:i:CC_CellComponent

--

--

p3 p4

true true true true

csml-variable:Double

m1589

10

false

infinite

0

unit false false false
InterProIPR004076
TRANSPATHMO000016595

--

Go back
222.0, 137.0
26.0, 26.0

IL-1RII

--

MO000016596

cso30:c:Protein

cso30:i:CC_CellComponent

--

--

p5

true true true true

csml-variable:Double

m1590

10

false

infinite

0

unit false false false
InterProIPR004078
TRANSPATHMO000016596

--

Go back
130.0, 185.0
25.0, 25.0

IL-1beta

--

MO000016597

cso30:c:Protein

cso30:i:CC_CellComponent

--

true true true true

csml-variable:Double

m1591

10

false

infinite

0

unit false false false
TRANSPATHMO000016597

--

Go back
128.0, 391.0
22.0, 22.0

IL-1RA

--

MO000016598

cso30:c:Protein

cso30:i:CC_CellComponent

--

true true true true

csml-variable:Double

m1592

10

false

infinite

0

unit false false false
InterProIPR003297
TRANSPATHMO000016598

--

Go back
328.0, 43.0
21.0, 21.0

fibrinogen

--

MO000017426

cso30:c:Protein

cso30:i:CC_CellComponent

--

--

p9

true true true true

csml-variable:Double

m2254

10

false

infinite

0

unit false false false
TRANSPATHMO000017426

--

Go back
457.0, 76.0
19.0, 19.0

fibronectin

--

MO000017549

cso30:c:Protein

cso30:i:CC_CellComponent

--

--

p7 p8 p9 p10

true true true true

csml-variable:Double

m2341

10

false

infinite

0

unit false false false
InterProIPR006209
TRANSPATHMO000017549

--

Go back
573.0, 36.0
28.0, 28.0

heparin

--

MO000018926

cso30:c:Protein

cso30:i:CC_CellComponent

--

--

p7

true true true true

csml-variable:Double

m356124

10

false

infinite

0

unit false false false
TRANSPATHMO000018926

--

Go back
103.0, 302.0
24.0, 24.0

proIL-1beta

--

MO000019449

cso30:c:Protein

cso30:i:CC_CellComponent

--

--

p1 p6

true true true true

csml-variable:Double

m4012

10

false

infinite

0

unit false false false
InterProIPR003297
TRANSPATHMO000019449

--

Go back
190.0, 337.0
26.0, 26.0

IL-1RI:IL-1RA

--

MO000039107

cso30:c:Protein

cso30:i:CC_CellComponent

--

p4

--

true true true true

csml-variable:Double

m17283

10

false

infinite

0

unit false false false
TRANSPATHMO000039107

--

Go back
725.0, 40.0
19.0, 19.0

collagen

--

MO000083632

cso30:c:Protein

cso30:i:CC_CellComponent

--

--

p8 p11

true true true true

csml-variable:Double

m57739

10

false

infinite

0

unit false false false
TRANSPATHMO000083632

--

Go back
170.48279587561012, 113.05111189421645
921.0615504569893, 1337.3813712635479

--

e1

cso30:c:EntityBiologicalCompartment

cso30:i:CC_PlasmaMembrane

--

--

--

true true true true

csml-variable:Double

m1

0

false

infinite

0

unit false true false

--

Go back
1168.5, 630.0
20.233627728711884, 24.775870688218642

Beta1-integrin:Beta1-integrin antibody

--

e10

cso30:c:Complex

cso30:i:CC_Cytoplasm

--

true true true true

csml-variable:Double

m10

0

false

infinite

0

unit false false false

--

Go back
126.0, 441.0
26.0, 26.0

IL-1RII

--

e11

cso30:c:Protein

cso30:i:CC_CellComponent

--

--

p6

true true true true

csml-variable:Double

m11

10

false

infinite

0

unit false false false
InterProIPR004078
TRANSPATHMO000016596

--

Go back
192.5, 169.0
21.871957903968426, 42.332821749616315

IL-1beta:IL-1RII

--

e12

cso30:c:Complex

cso30:i:CC_Cytosol

--

p5

--

true true true true

csml-variable:Double

m12

0

false

infinite

0

unit false false false

--

Go back
116.5, 501.0
20.535744042659555, 25.145809031828023

pro IL-1beta:IL-1RII

--

e13

cso30:c:Complex

cso30:i:CC_Cytosol

--

p6

--

true true true true

csml-variable:Double

m13

0

false

infinite

0

unit false false false

--

Go back
621.5, 86.0
19.523246125645723, 23.90601566405599

Fibronectin:Heparin

--

e14

cso30:c:Complex

cso30:i:CC_Cytosol

--

p7

--

true true true true

csml-variable:Double

m14

0

false

infinite

0

unit false false false

--

Go back
789.5, 82.0
19.523246125645723, 23.90601566405599

Fibronectin:collagen

--

e15

cso30:c:Complex

cso30:i:CC_Cytosol

--

p8

--

true true true true

csml-variable:Double

m15

0

false

infinite

0

unit false false false

--

Go back
321.5, 74.0
19.523246125645723, 23.90601566405599

Fibronectin:Fibrinogen

--

e16

cso30:c:Complex

cso30:i:CC_Cytosol

--

p9

--

true true true true

csml-variable:Double

m16

0

false

infinite

0

unit false false false

--

Go back
378.5, 126.0
25.428822495606326, 39.12126537785589

Cellular surface integrin receptors

--

e17

cso30:c:Protein

cso30:i:CC_Cytosol

--

--

p10

true true true true

csml-variable:Double

m17

0

false

infinite

0

unit false false false

--

Go back
583.5, 116.0
22.673975005481257, 43.885112913834675

Fibronectin:cellular surface integrin receptors

--

e18

cso30:c:Complex

cso30:i:CC_Cytosol

--

true true true true

csml-variable:Double

m18

0

false

infinite

0

unit false false false

--

Go back
1048.5, 293.0
21.817583863187895, 42.227581670686256

GM-CSF:GM-CSFR

--

e19

cso30:c:Complex

cso30:i:CC_Cytosol

--

true true true true

csml-variable:Double

m19

0

false

infinite

0

unit false false false

--

Go back
170.48279587561012, 113.05111189421645
921.0615504569893, 1337.3813712635479

--

e2

cso30:c:EntityBiologicalCompartment

cso30:i:CC_PlasmaMembrane_ExternalSideOfPlasmaMembrane_

--

--

--

true true true true

csml-variable:Double

m2

0

false

infinite

0

unit false true false

--

Go back
413.0, 558.0
42.6643598615917, 22.75432525951557

IL-1ra

--

e20

cso30:c:mRNA

cso30:i:CC_Nucleoplasm

--

--

p14 p16

true true true true

csml-variable:Double

m20

0

false

infinite

0

unit false false false

--

Go back
1042.5, 370.0
25.405975395430577, 39.086115992970115

TNF-alpha receptor

--

e21

cso30:c:Protein

cso30:i:CC_Cytosol

--

--

p15

true true true true

csml-variable:Double

m21

0

false

infinite

0

unit false false false

--

Go back
1043.5, 447.0
23.6730980048235, 45.81889936417452

TNF-alpha:receptor

--

e22

cso30:c:Complex

cso30:i:CC_Cytosol

--

true true true true

csml-variable:Double

m22

0

false

infinite

0

unit false false false

--

Go back
1111.5, 57.0
23.671463737928423, 34.641166445748915

Bacteria

--

e23

cso30:c:Cell

cso30:i:CC_Cytosol

--

--

p17

true true true true

csml-variable:Double

m23

0

false

infinite

0

unit false false false

--

Go back
995.5, 116.0
22.915641476274168, 35.25483304042179

surface receptor

--

e24

cso30:c:Protein

cso30:i:CC_Cytosol

--

--

p17

true true true true

csml-variable:Double

m24

0

false

infinite

0

unit false false false

--

Go back
1043.5, 167.0
23.6730980048235, 45.81889936417452

Bacteria:surface receptor

--

e25

cso30:c:Complex

cso30:i:CC_Cytosol

--

p17

--

true true true true

csml-variable:Double

m25

0

false

infinite

0

unit false false false

--

Go back
1120.0, 530.0
21.384615384615383, 32.07692307692307

Beta1-integrin antibody

--

e26

cso30:c:Protein

cso30:i:CC_Cytosol

--

--

p18

true true true true

csml-variable:Double

m26

0

false

infinite

0

unit false false false

--

Go back
1168.0, 513.5
22.88, 17.16

Beta1-integrin

--

e27

cso30:c:Protein

cso30:i:CC_Cytosol

--

--

p18

true true true true

csml-variable:Double

m27

0

false

infinite

0

unit false false false

--

Go back
822.0, 539.0
26.34146341463415, 21.073170731707314

pp76{p}

--

e28

cso30:c:Protein

cso30:i:CC_Cytosol

--

true true true true

csml-variable:Double

m28

0

false

infinite

0

unit false false false

--

Go back
829.0, 463.5
24.18595290802978, 14.914670959951701

pp76

--

e29

cso30:c:Protein

cso30:i:CC_Cytosol

--

--

p19

true true true true

csml-variable:Double

m29

0

false

infinite

0

unit false false false

--

Go back
188.9040268847499, 131.47234290335626
884.2190884387096, 1300.5389092452697

--

e3

cso30:c:EntityBiologicalCompartment

cso30:i:CC_PlasmaMembrane_IntegralToPlasmaMembrane_

--

--

--

true true true true

csml-variable:Double

m3

0

false

infinite

0

unit false true false

--

Go back
1198.0, 701.5
26.99472759226714, 17.54657293497364

Anti Beta1-integrin

--

e30

cso30:c:Protein

cso30:i:CC_Extracellular

--

--

p21

true true true true

csml-variable:Double

m30

0

false

infinite

0

unit false false false

--

Go back
1183.0, 767.0
24.923076923076923, 37.38461538461538

antibet3-integrin antibody

--

e31

cso30:c:Protein

cso30:i:CC_Extracellular

--

--

p22

true true true true

csml-variable:Double

m31

0

false

infinite

0

unit false false false

--

Go back
193.5, 235.0
21.871957903968426, 42.332821749616315

IL-1beta:IL-1RI

--

e32

cso30:c:Complex

cso30:i:CC_Cytosol

--

p3

--

true true true true

csml-variable:Double

m32

0

false

infinite

0

unit false false false

--

Go back
222.98330425165852, 163.7094971693508
816.0605337048922, 1236.0646007132798

--

e4

cso30:c:EntityBiologicalCompartment

cso30:i:CC_PlasmaMembrane_InternalSideOfPlasmaMembrane_

--

--

--

true true true true

csml-variable:Double

m4

0

false

infinite

0

unit false true false

--

Go back
87.0, 133.0
15.018709073900842, 34.658559401309624

ICE

--

e5

cso30:c:Protein

cso30:i:CC_Cytosol

--

--

p1

true true true true

csml-variable:Double

m5

0

false

infinite

0

unit false false false

--

Go back
256.44988171659145, 383.3173374635156
500.8906888806601, 454.252822131996

--

e50

cso30:c:EntityBiologicalCompartment

cso30:i:CC_NuclearEnvelopeLumen

--

--

--

true true true true

csml-variable:Double

m50

0

false

infinite

0

unit false true false

--

Go back
310.54980714504273, 394.08246896831383
292.8858031816152, 440.2614621073963

--

e51

cso30:c:EntityBiologicalCompartment

cso30:i:CC_NuclearPore

--

--

--

true true true true

csml-variable:Double

m51

0

false

infinite

0

unit false true false

--

Go back
262.9791830614047, 389.38026014084176
487.83208619103453, 442.12697677734286

--

e52

cso30:c:EntityBiologicalCompartment

cso30:i:CC_NuclearInnerMembrane

--

--

--

true true true true

csml-variable:Double

m52

0

false

infinite

0

unit false true false

--

Go back
263.9119403963777, 390.3130174758153
485.9665715210876, 440.2614621073963

--

e53

cso30:c:EntityBiologicalCompartment

cso30:i:CC_NuclearLumen

--

--

--

true true true true

csml-variable:Double

m53

0

false

infinite

0

unit false true false

--

Go back
256.44988171659145, 383.3173374635156
500.8906888806601, 454.252822131996

--

e54

cso30:c:EntityBiologicalCompartment

cso30:i:CC_NuclearOuterMembrane

--

--

--

true true true true

csml-variable:Double

m54

0

false

infinite

0

unit false true false

--

Go back
256.44988171659145, 383.3173374635156
500.8906888806601, 454.252822131996

--

e55

cso30:c:EntityBiologicalCompartment

cso30:i:CC_Nucleus

--

--

--

true true true true

csml-variable:Double

m55

0

false

infinite

0

unit false true false

--

Go back
263.9119403963777, 390.3130174758153
485.9665715210876, 440.2614621073963

--

e56

cso30:c:EntityBiologicalCompartment

cso30:i:CC_Nucleoplasm

--

--

--

true true true true

csml-variable:Double

m56

0

false

infinite

0

unit false true false

--

Go back
622.0907570261226, 569.8688044581752
31.292898095333037, 28.32830774945942

--

e57

cso30:c:EntityBiologicalCompartment

cso30:i:CC_NuclearBody

--

--

--

true true true true

csml-variable:Double

m57

0

false

infinite

0

unit false true false

--

Go back
540.0081115484736, 700.454831354436
88.61194682246314, 80.21713080770361

--

e58

cso30:c:EntityBiologicalCompartment

cso30:i:CC_Nucleolus

--

--

--

true true true true

csml-variable:Double

m58

0

false

infinite

0

unit false true false

--

Go back
256.44988171659145, 383.3173374635156
500.8906888806601, 454.252822131996

--

e59

cso30:c:EntityBiologicalCompartment

cso30:i:CC_NuclearEnvelope

--

--

--

true true true true

csml-variable:Double

m59

0

false

infinite

0

unit false true false

--

Go back
123.5, 46.0
14.966794123566109, 24.270476957134246

Pro IL-1alpha

--

e6

cso30:c:Protein

cso30:i:CC_Cytosol

--

--

p2

true true true true

csml-variable:Double

m6

0

false

infinite

0

unit false false false

--

Go back
374.5069987678459, 585.1835380970037
15.862472135293546, 7.6374865836598715

--

e60

cso30:c:EntityBiologicalCompartment

cso30:i:CC_Chromatin

--

--

--

true true true true

csml-variable:Double

m60

0

false

infinite

0

unit false true false

--

Go back
373.97730592322677, 562.4067457783881
54.293516573445636, 97.72832983220223

--

e61

cso30:c:EntityBiologicalCompartment

cso30:i:CC_NuclearChromosome

--

--

--

true true true true

csml-variable:Double

m61

0

false

infinite

0

unit false true false

--

Go back
396.7540982418435, 625.9698871326657
8.475085513903705, 8.475085513903718

--

e62

cso30:c:EntityBiologicalCompartment

cso30:i:CC_NuclearCentromere

--

--

--

true true true true

csml-variable:Double

m62

0

false

infinite

0

unit false true false

--

Go back
171.48128445966816, 140.95859660444134
887.3773422407295, 1257.3907727691526

--

e7

cso30:c:EntityBiologicalCompartment

cso30:i:CC_Cell

--

--

--

true true true true

csml-variable:Double

m7

0

false

infinite

0

unit false true false

--

Go back
176.3086920374147, 168.33242674974457
847.0244701767184, 1229.8795306965958

--

e8

cso30:c:EntityBiologicalCompartment

cso30:i:CC_Cell_WithoutCellWall_

--

--

--

true true true true

csml-variable:Double

m8

0

false

infinite

0

unit false true false

--

Go back
165.41668641333058, 162.61142014788757
862.5657717096435, 1241.6889829337028

--

e9

cso30:c:EntityBiologicalCompartment

cso30:i:CC_Cytoplasm

--

--

--

true true true true

csml-variable:Double

m9

0

false

infinite

0

unit false true false

--

Go back
83.0, 238.0
23.0, 23.0

p1

p1

cso30:i:ME_Cleavage

cso30:i:CC_Cytosol

--

true true true true

--

and

mass

coefficient1:0.1
coefficient2:1.0
stoichiometry:c1 : 1
stoichiometry:c3 : 1
stoichiometry:c2 : 1

m4012*m5*0.1

nodelay

--

true

0

false

PMID: 16978691, The two agonists, IL-1greek alpha and IL-1beta, both initially are synthesized as 31 kDa precursors, pro-IL-1greek small letter alpha and pro-IL-1¦Â, which are then cleaved into their mature 17 kDa forms PMID: 16978691 IL-18 is cleaved via the same enzyme, IL-1 converting enzyme (ICE), as IL-1¦Â, although the biological effects can differ.

Go back
456.0, 127.0
21.0, 21.0

p7

p10

cso30:i:ME_Binding

cso30:i:CC_Cytosol

--

true true true true

--

and

mass

coefficient1:0.1
coefficient2:1.0
stoichiometry:c26 : 1
stoichiometry:c27 : 1
stoichiometry:c28 : 1

m17*m2341*0.1

nodelay

--

true

0

false

PMID: 16978691,12244123,10077553 FN contains multiple binding sites which bind to other molecules such as heparin (heparin I and II), collagen (Type I module, domains 6?9 (I6¡Ý9) and Type II module, domains 1 and 2 (II1,2)), fibrin (Fibrin I and II), and cellular surface integrin receptors which bind via the cell-binding repeats (I1¡Ý9,II1,2, and III9¡Ý10)

Go back
613.0, 449.0
21.0, 21.0

p11

p11

cso30:i:ME_GeneExpression

cso30:i:CC_Nucleoplasm

--

true true true true

--

and

mass

coefficient1:0.1
coefficient2:1.0
stoichiometry:c29 : 1
stoichiometry:c30 : 1

m57739*0.1

nodelay

--

true

0

false

PMID:16978691 Collagen was found to stimulate the greatest mRNA expression, followed by FN, while fibrin was found to induce little to no IL-1beta mRNA expression.

Go back
577.0, 433.0
21.0, 21.0

p11

p12

cso30:i:ME_GeneExpression

cso30:i:CC_Nucleoplasm

--

true true true true

--

and

mass

coefficient1:0.1
coefficient2:1.0
stoichiometry:c31 : 1
stoichiometry:c32 : 1

m18*0.1

nodelay

--

true

0

false

PMID:16978691 Collagen was found to stimulate the greatest mRNA expression, followed by FN, while fibrin was found to induce little to no IL-1beta mRNA expression.

Go back
1124.0, 303.0
21.0, 21.0

p13

p13

cso30:i:ME_Binding

cso30:i:CC_Cytosol

--

true true true true

--

and

mass

coefficient1:0.1
coefficient2:1.0
stoichiometry:c33 : 1
stoichiometry:c34 : 1
stoichiometry:c35 : 1

m88*m81*0.1

nodelay

--

true

0

false

PMID: 16978691,1386877 GM-CSF and TNF-alpha may also further induce the production of IL-1ra

Go back
315.0, 350.0
23.0, 23.0

p14

p14

cso30:i:ME_Translation

cso30:i:CC_Cytosol

--

true true true true

--

and

mass

coefficient1:0.1
coefficient2:1.0
stoichiometry:c36 : 1
stoichiometry:c38 : 1
stoichiometry:c37 : 1

m20*m19*0.1

nodelay

--

true

0

false

PMID: 16978691,1386877 GM-CSF and TNF-alpha may also further induce the production of IL-1ra

Go back
1124.0, 419.0
21.0, 21.0

p13

p15

cso30:i:ME_Binding

cso30:i:CC_Cytosol

--

true true true true

--

and

mass

coefficient1:0.1
coefficient2:1.0
stoichiometry:c39 : 1
stoichiometry:c40 : 1
stoichiometry:c41 : 1

m230*m21*0.1

nodelay

--

true

0

false

PMID: 16978691,1386877 GM-CSF and TNF-alpha may also further induce the production of IL-1ra

Go back
372.0, 300.0
23.0, 23.0

p14

p16

cso30:i:ME_Translation

cso30:i:CC_Cytosol

--

true true true true

--

and

mass

coefficient1:0.1
coefficient2:1.0
stoichiometry:c42 : 1
stoichiometry:c43 : 1
stoichiometry:c44 : 1

m20*m22*0.1

nodelay

--

true

0

false

PMID: 16978691,1386877 GM-CSF and TNF-alpha may also further induce the production of IL-1ra

Go back
1112.0, 127.0
19.0, 19.0

p17

p17

cso30:i:ME_Binding

cso30:i:CC_Extracellular

--

true true true true

--

and

mass

coefficient1:0.1
coefficient2:1.0
stoichiometry:c45 : 1
stoichiometry:c46 : 1
stoichiometry:c47 : 1

m23*m24*0.1

nodelay

--

true

0

false

PMID: 16978691 Bacteria can bind to the surface receptors of host cells, including macrophages, through bacterial fimbriae.

Go back
1168.0, 571.0
21.0, 21.0

p18

p18

cso30:i:ME_Binding

cso30:i:CC_Cytosol

--

true true true true

--

and

mass

coefficient1:0.1
coefficient2:1.0
stoichiometry:c48 : 1
stoichiometry:c49 : 1
stoichiometry:c52 : 1

m27*m26*0.1

nodelay

--

true

0

false

PMID: 16978691 Beta1 integrin binding with anti-integrin ¦Â1 antibody resulted in an increase in phosphorylation of pp76 and an increase in IL-1beta mRNA expression.

Go back
876.0, 499.0
23.0, 23.0

p19

p19

cso30:i:ME_Phosphorylation

cso30:i:CC_Cytosol

--

true true true true

--

and

mass

coefficient1:0.1
coefficient2:1.0
stoichiometry:c50 : 1
stoichiometry:c53 : 1
stoichiometry:c51 : 1

m29*m10*0.1

nodelay

--

true

0

false

PMID: 16978691 Beta1 integrin binding with anti-integrin ¦Â1 antibody resulted in an increase in phosphorylation of pp76 and an increase in IL-1beta mRNA expression.

Go back
180.0, 47.0
22.0, 22.0

p1

p2

cso30:i:ME_Cleavage

cso30:i:CC_Cytosol

--

true true true true

--

and

mass

coefficient1:0.1
coefficient2:1.0
stoichiometry:c4 : 1
stoichiometry:c5 : 1

m6*0.1

nodelay

--

true

0

false

PMID: 16978691, The two agonists, IL-1greek alpha and IL-1beta, both initially are synthesized as 31 kDa precursors, pro-IL-1greek small letter alpha and pro-IL-1¦Â, which are then cleaved into their mature 17 kDa forms

Go back
607.0, 546.0
23.0, 23.0

p20

p20

cso30:i:ME_GeneExpression

cso30:i:CC_Nucleoplasm

--

true true true true

--

and

mass

coefficient1:0.1
coefficient2:1.0
stoichiometry:c54 : 1
stoichiometry:c55 : 1

m28*0.1

nodelay

--

true

0

false

PMID: 16978691 Beta1 integrin binding with anti-integrin ¦Â1 antibody resulted in an increase in phosphorylation of pp76 and an increase in IL-1beta mRNA expression.

Go back
637.0, 616.0
19.0, 19.0

p21

p21

cso30:i:ME_GeneExpression

cso30:i:CC_Cytoplasm

--

true true true true

--

and

mass

coefficient1:0.1
coefficient2:1.0
stoichiometry:c56 : 1
stoichiometry:c57 : 1

m30*0.1

nodelay

--

true

0

false

PMID: 16978691 In parallel with the IL-1beta study, anti-beta1 integrin and anti-beta3 integrin antibody pre-treatment also resulted in a general decrease in matrix metalloprotease-2 (MMP-2) and matrix metalloprotease-9 (MMP-9) secretion and mRNA expression.

Go back
629.0, 692.0
19.0, 19.0

p21

p22

cso30:i:ME_GeneExpression

cso30:i:CC_Cytoplasm

--

true true true true

--

and

mass

coefficient1:0.1
coefficient2:1.0
stoichiometry:c58 : 1
stoichiometry:c59 : 1

m31*0.1

nodelay

--

true

0

false

PMID: 16978691 In parallel with the IL-1beta study, anti-beta1 integrin and anti-beta3 integrin antibody pre-treatment also resulted in a general decrease in matrix metalloprotease-2 (MMP-2) and matrix metalloprotease-9 (MMP-9) secretion and mRNA expression.

Go back
408.0, 240.0
23.0, 23.0

p14

p23

cso30:i:ME_Translation

cso30:i:CC_Cytosol

--

true true true true

--

and

mass

coefficient1:0.1
coefficient2:1.0
stoichiometry:c61 : 1
stoichiometry:c62 : 1

m93364*0.1

nodelay

--

true

0

false

PMID: 16978691,1386877 GM-CSF and TNF-alpha may also further induce the production of IL-1ra

Go back
132.0, 247.0
22.0, 22.0

p3

p3

cso30:i:ME_Binding

cso30:i:CC_Cytosol

--

true true true true

--

and

mass

coefficient1:0.1
coefficient2:1.0
stoichiometry:c6 : 1
stoichiometry:c7 : 1
stoichiometry:c60 : 1

m1591*m1589*0.1

nodelay

--

true

0

false

PMID: 16978691 IL-1 alpha, IL-1beta, and IL-1ra all bind to the biologically active IL-1RI receptor, however IL-1¦Â binds somewhat less efficiently than the other cytokines.

Go back
128.0, 339.0
22.0, 22.0

p3

p4

cso30:i:ME_Binding

cso30:i:CC_Cytosol

--

true true true true

--

and

mass

coefficient1:0.1
coefficient2:1.0
stoichiometry:c8 : 1
stoichiometry:c9 : 1
stoichiometry:c10 : 1

m1592*m1589*0.1

nodelay

--

true

0

false

PMID: 16978691 IL-1 alpha, IL-1beta, and IL-1ra all bind to the biologically active IL-1RI receptor, however IL-1¦Â binds somewhat less efficiently than the other cytokines.

Go back
132.0, 119.0
21.0, 21.0

p5

p5

cso30:i:ME_Binding

cso30:i:CC_Cytosol

--

true true true true

--

and

mass

coefficient1:0.1
coefficient2:1.0
stoichiometry:c11 : 1
stoichiometry:c12 : 1
stoichiometry:c13 : 1

m1591*m1590*0.1

nodelay

--

true

0

false

PMID: 16978691 IL-1RII binds 10?100 times more preferentially to IL-1¦Â than IL-1 alpha or IL-1ra and in soluble form can even bind pro-IL-1beta

Go back
72.0, 363.0
21.0, 21.0

p5

p6

cso30:i:ME_Binding

cso30:i:CC_Cytosol

--

true true true true

--

and

mass

coefficient1:0.1
coefficient2:1.0
stoichiometry:c14 : 1
stoichiometry:c15 : 1
stoichiometry:c16 : 1

m4012*m11*0.1

nodelay

--

true

0

false

PMID: 16978691 IL-1RII binds 10?100 times more preferentially to IL-1¦Â than IL-1 alpha or IL-1ra and in soluble form can even bind pro-IL-1beta

Go back
504.0, 39.0
21.0, 21.0

p7

p7

cso30:i:ME_Binding

cso30:i:CC_Cytosol

--

true true true true

--

and

mass

coefficient1:0.1
coefficient2:1.0
stoichiometry:c17 : 1
stoichiometry:c18 : 1
stoichiometry:c19 : 1

m2341*m356124*0.1

nodelay

--

true

0

false

PMID: 16978691,12244123,10077553 FN contains multiple binding sites which bind to other molecules such as heparin (heparin I and II), collagen (Type I module, domains 6?9 (I6¡Ý9) and Type II module, domains 1 and 2 (II1,2)), fibrin (Fibrin I and II), and cellular surface integrin receptors which bind via the cell-binding repeats (I1¡Ý9,II1,2, and III9¡Ý10)

Go back
640.0, 55.0
21.0, 21.0

p7

p8

cso30:i:ME_Binding

cso30:i:CC_Cytosol

--

true true true true

--

and

mass

coefficient1:0.1
coefficient2:1.0
stoichiometry:c20 : 1
stoichiometry:c21 : 1
stoichiometry:c22 : 1

m2341*m57739*0.1

nodelay

--

true

0

false

PMID: 16978691,12244123,10077553 FN contains multiple binding sites which bind to other molecules such as heparin (heparin I and II), collagen (Type I module, domains 6?9 (I6¡Ý9) and Type II module, domains 1 and 2 (II1,2)), fibrin (Fibrin I and II), and cellular surface integrin receptors which bind via the cell-binding repeats (I1¡Ý9,II1,2, and III9¡Ý10)

Go back
392.0, 75.0
21.0, 21.0

p7

p9

cso30:i:ME_Binding

cso30:i:CC_Cytosol

--

true true true true

--

and

mass

coefficient1:0.1
coefficient2:1.0
stoichiometry:c23 : 1
stoichiometry:c24 : 1
stoichiometry:c25 : 1

m2341*m2254*0.1

nodelay

--

true

0

false

PMID: 16978691,12244123,10077553 FN contains multiple binding sites which bind to other molecules such as heparin (heparin I and II), collagen (Type I module, domains 6?9 (I6¡Ý9) and Type II module, domains 1 and 2 (II1,2)), fibrin (Fibrin I and II), and cellular surface integrin receptors which bind via the cell-binding repeats (I1¡Ý9,II1,2, and III9¡Ý10)

Go back
100.41795088587145, 268.62584510159456

c1

c1

cso30:c:InputProcess

--

true true true true

cso30:c:InputProcess

threshold

--

0

1,

--

Go back
150.0, 350.0

c10

c10

cso30:c:OutputProcess

--

true true true true

cso30:c:OutputProcess

threshold

--

0

1,

--

Go back
143.0, 148.0

c11

c11

cso30:c:InputProcess

--

true true true true

cso30:c:InputProcess

threshold

--

0

1,

--

Go back
160.8174109113824, 133.69943715464834

c12

c12

cso30:c:InputProcess

--

true true true true

cso30:c:InputProcess

threshold

--

0

1,

--

Go back
153.0, 140.0

c13

c13

cso30:c:OutputProcess

--

true true true true

cso30:c:OutputProcess

threshold

--

0

1,

--

Go back
92.80413627492379, 326.0

c14

c14

cso30:c:InputProcess

--

true true true true

cso30:c:InputProcess

threshold

--

0

1,

--

Go back
94.59540599277145, 390.5484535396993

c15

c15

cso30:c:InputProcess

--

true true true true

cso30:c:InputProcess

threshold

--

0

1,

--

Go back
86.0, 384.0

c16

c16

cso30:c:OutputProcess

--

true true true true

cso30:c:OutputProcess

threshold

--

0

1,

--

Go back
476.0, 62.8

c17

c17

cso30:c:InputProcess

--

true true true true

cso30:c:InputProcess

threshold

--

0

1,

--

Go back
533.0, 50.0

c18

c18

cso30:c:InputProcess

--

true true true true

cso30:c:InputProcess

threshold

--

0

1,

--

Go back
525.0, 54.0

c19

c19

cso30:c:OutputProcess

--

true true true true

cso30:c:OutputProcess

threshold

--

0

1,

--

Go back
106.0, 215.8623479330104

c2

c2

cso30:c:OutputProcess

--

true true true true

cso30:c:OutputProcess

threshold

--

0

1,

--

Go back
476.0, 67.87280742401299

c20

c20

cso30:c:InputProcess

--

true true true true

cso30:c:InputProcess

threshold

--

0

1,

--

Go back
668.8629774954745, 52.0

c21

c21

cso30:c:InputProcess

--

true true true true

cso30:c:InputProcess

threshold

--

0

1,

--

Go back
661.0, 68.0

c22

c22

cso30:c:OutputProcess

--

true true true true

cso30:c:OutputProcess

threshold

--

0

1,

--

Go back
421.0, 86.0

c23

c23

cso30:c:InputProcess

--

true true true true

cso30:c:InputProcess

threshold

--

0

1,

--

Go back
349.0, 59.0

c24

c24

cso30:c:InputProcess

--

true true true true

cso30:c:InputProcess

threshold

--

0

1,

--

Go back
349.0, 86.0

c25

c25

cso30:c:OutputProcess

--

true true true true

cso30:c:OutputProcess

threshold

--

0

1,

--

Go back
404.0, 139.91699286388103

c26

c26

cso30:c:InputProcess

--

true true true true

cso30:c:InputProcess

threshold

--

0

1,

--

Go back
467.0, 95.0

c27

c27

cso30:c:InputProcess

--

true true true true

cso30:c:InputProcess

threshold

--

0

1,

--

Go back
477.0, 138.0

c28

c28

cso30:c:OutputProcess

--

true true true true

cso30:c:OutputProcess

threshold

--

0

1,

--

Go back
629.0982387070455, 59.0

c29

c29

cso30:c:InputAssociation

--

true true true true

cso30:c:InputAssociation

threshold

--

0

1,

--

Go back
95.0, 168.0

c3

c3

cso30:c:InputAssociation

--

true true true true

cso30:c:InputAssociation

threshold

--

0

1,

--

Go back
537.8673218643836, 466.0

c30

c30

cso30:c:OutputProcess

--

true true true true

cso30:c:OutputProcess

threshold

--

0

1,

--

Go back
588.1757817267227, 160.0

c31

c31

cso30:c:InputAssociation

--

true true true true

cso30:c:InputAssociation

threshold

--

0

1,

--

Go back
535.321648337188, 454.0

c32

c32

cso30:c:OutputProcess

--

true true true true

cso30:c:OutputProcess

threshold

--

0

1,

--

Go back
1135.0, 253.0

c33

c33

cso30:c:InputProcess

--

true true true true

cso30:c:InputProcess

threshold

--

0

1,

--

Go back
1067.0, 263.0

c34

c34

cso30:c:InputProcess

--

true true true true

cso30:c:InputProcess

threshold

--

0

1,

--

Go back
1078.0, 314.0

c35

c35

cso30:c:OutputProcess

--

true true true true

cso30:c:OutputProcess

threshold

--

0

1,

--

Go back
336.654437479941, 380.1165361451483

c36

c36

cso30:c:InputAssociation

--

true true true true

cso30:c:InputAssociation

threshold

--

0

1,

--

Go back
157.82587300081954, 365.0

c37

c37

cso30:c:OutputProcess

--

true true true true

cso30:c:OutputProcess

threshold

--

0

1,

--

Go back
345.9833092571598, 315.0

c38

c38

cso30:c:InputAssociation

--

true true true true

cso30:c:InputAssociation

threshold

--

0

1,

--

Go back
1135.0, 385.0

c39

c39

cso30:c:InputProcess

--

true true true true

cso30:c:InputProcess

threshold

--

0

1,

--

Go back
138.0, 58.0

c4

c4

cso30:c:InputProcess

--

true true true true

cso30:c:InputProcess

threshold

--

0

1,

--

Go back
1068.0, 397.0

c40

c40

cso30:c:InputProcess

--

true true true true

cso30:c:InputProcess

threshold

--

0

1,

--

Go back
1074.1302242460888, 435.0

c41

c41

cso30:c:OutputProcess

--

true true true true

cso30:c:OutputProcess

threshold

--

0

1,

--

Go back
387.53679234081966, 330.85100434983946

c42

c42

cso30:c:InputAssociation

--

true true true true

cso30:c:InputAssociation

threshold

--

0

1,

--

Go back
402.78922203006647, 316.8242862073499

c43

c43

cso30:c:InputAssociation

--

true true true true

cso30:c:InputAssociation

threshold

--

0

1,

--

Go back
157.50443377014824, 316.0

c44

c44

cso30:c:OutputProcess

--

true true true true

cso30:c:OutputProcess

threshold

--

0

1,

--

Go back
1122.228478191191, 92.0

c45

c45

cso30:c:InputProcess

--

true true true true

cso30:c:InputProcess

threshold

--

0

1,

--

Go back
1018.0, 134.0

c46

c46

cso30:c:InputProcess

--

true true true true

cso30:c:InputProcess

threshold

--

0

1,

--

Go back
1073.3148177390106, 145.0

c47

c47

cso30:c:OutputProcess

--

true true true true

cso30:c:OutputProcess

threshold

--

0

1,

--

Go back
1179.0, 531.0

c48

c48

cso30:c:InputProcess

--

true true true true

cso30:c:InputProcess

threshold

--

0

1,

--

Go back
1141.0, 554.0

c49

c49

cso30:c:InputProcess

--

true true true true

cso30:c:InputProcess

threshold

--

0

1,

--

Go back
156.3488508903353, 67.0

c5

c5

cso30:c:OutputProcess

--

true true true true

cso30:c:OutputProcess

threshold

--

0

1,

--

Go back
850.0, 478.0

c50

c50

cso30:c:InputProcess

--

true true true true

cso30:c:InputProcess

threshold

--

0

1,

--

Go back
854.5098677696539, 520.0

c51

c51

cso30:c:OutputProcess

--

true true true true

cso30:c:OutputProcess

threshold

--

0

1,

--

Go back
1179.0, 592.0

c52

c52

cso30:c:OutputProcess

--

true true true true

cso30:c:OutputProcess

threshold

--

0

1,

--

Go back
906.3004225764489, 519.2716708583345

c53

c53

cso30:c:InputAssociation

--

true true true true

cso30:c:InputAssociation

threshold

--

0

1,

--

Go back
637.9946884542561, 551.0

c54

c54

cso30:c:InputAssociation

--

true true true true

cso30:c:InputAssociation

threshold

--

0

1,

--

Go back
538.5067449345369, 528.7656428706189

c55

c55

cso30:c:OutputProcess

--

true true true true

cso30:c:OutputProcess

threshold

--

0

1,

--

Go back
663.912132119669, 628.182440409028

c56

c56

cso30:c:InputAssociation

--

true true true true

cso30:c:InputAssociation

threshold

--

0

1,

--

Go back
588.0, 626.0

c57

c57

cso30:c:OutputProcess

--

true true true true

cso30:c:OutputProcess

threshold

--

0

1,

--

Go back
655.9098567032398, 704.1975670896494

c58

c58

cso30:c:InputAssociation

--

true true true true

cso30:c:InputAssociation

threshold

--

0

1,

--

Go back
586.0, 702.0

c59

c59

cso30:c:OutputProcess

--

true true true true

cso30:c:OutputProcess

threshold

--

0

1,

--

Go back
143.0, 210.0

c6

c6

cso30:c:InputProcess

--

true true true true

cso30:c:InputProcess

threshold

--

0

1,

--

Go back
154.0, 256.39950093555115

c60

c60

cso30:c:OutputProcess

--

true true true true

cso30:c:OutputProcess

threshold

--

0

1,

--

Go back
426.74865225010825, 270.51298281696256

c61

c61

cso30:c:InputAssociation

--

true true true true

cso30:c:InputAssociation

threshold

--

0

1,

--

Go back
162.8482042878889, 201.55102851539306

c62

c62

cso30:c:OutputProcess

--

true true true true

cso30:c:OutputProcess

threshold

--

0

1,

--

Go back
160.1601724872445, 272.1041429180026

c7

c7

cso30:c:InputProcess

--

true true true true

cso30:c:InputProcess

threshold

--

0

1,

--

Go back
139.0, 369.0

c8

c8

cso30:c:InputProcess

--

true true true true

cso30:c:InputProcess

threshold

--

0

1,

--

Go back
156.735033111711, 318.0

c9

c9

cso30:c:InputProcess

--

true true true true

cso30:c:InputProcess

threshold

--

0

1,

--

Go back