Original Literature | Model OverView |
---|---|
Publication
Title
Signaling pathways activated by microorganisms.
Affiliation
Department of Host Defense, Research Institute for Microbial Diseases, OsakaUniversity, ERATO, Japan Science and Technology Agency, 3-1 Yamada-oka, Suita,Osaka 565-0871, Japan.
Abstract
Invasion of viruses and bacteria is initially sensed by the host innate immunesystem, and evokes a rapid inflammatory response. Nucleotides from RNA virusesare recognized by retinoic-acid-inducible gene I-like helicases and Toll-likereceptors, and this recognition triggers signaling cascades that induceantiviral mediators such as type I interferons. By contrast, Toll-like receptorsrecognizing bacterial components induce the expression of proinflammatorycytokines. Furthermore, recent studies suggest that viral and bacterial DNA alsoinduce interferons in a Toll-independent mechanism, possibly throughunidentified cytoplasmic receptor(s).
PMID
17303405
|
Entity
NF-kappaB
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MO000000058
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TRANSPATH | MO000000058 |
--
TRAF6
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m183
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TRANSPATH | MO000000212 |
--
IRF-3
--
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--
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m977
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TRANSPATH | MO000007694 |
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IRF-7
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TRANSPATH | MO000007702 |
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MyD88
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TRANSPATH | MO000016573 |
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TRANSPATH | MO000016574 |
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TRANSPATH | MO000016599 |
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TRANSPATH | MO000016906 |
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TRANSPATH | MO000022224 |
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TRANSPATH | MO000039077 |
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TRANSPATH | MO000041446 |
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TRANSPATH | MO000041456 |
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TRANSPATH | MO000041457 |
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--
csml-variable:Double
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lipoprotein:TLR2
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e14
cso30:c:Complex
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--
csml-variable:Double
m14
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infinite
0
--
peptidoglycan:TLR6
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e15
cso30:c:Complex
cso30:i:CC_PlasmaMembrane_IntegralToPlasmaMembrane_
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--
csml-variable:Double
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--
lipoprotein:TLR6
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e16
cso30:c:Complex
cso30:i:CC_PlasmaMembrane_IntegralToPlasmaMembrane_
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--
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--
LPS:TLR4
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e17
cso30:c:Complex
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0
--
flagellin:TLR5
--
e18
cso30:c:Complex
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--
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e19
cso30:c:EntityBiologicalCompartment
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--
e2
cso30:c:EntityBiologicalCompartment
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0
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0
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--
e20
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--
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--
e21
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--
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0
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--
e22
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--
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infinite
0
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--
e23
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--
--
csml-variable:Double
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0
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--
e24
cso30:c:EntityBiologicalCompartment
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--
--
csml-variable:Double
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ssRNA:TLR7
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e25
cso30:c:Complex
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--
csml-variable:Double
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ssRNA
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CpG DNA
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--
csml-variable:Double
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CpGDNA:TLR9
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MDA5
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--
csml-variable:Double
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--
e3
cso30:c:EntityBiologicalCompartment
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--
--
csml-variable:Double
m3
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infinite
0
--
dsRNA:MDA5
--
e30
cso30:c:Complex
cso30:i:CC_Cytosol
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csml-variable:Double
m30
0
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0
--
csml-variable:Double
m31
0
infinite
0
--
dsRNA:RIG-I
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e32
cso30:c:Complex
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csml-variable:Double
m32
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IPS1
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dsRNA:MDA5:IPS1
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cso30:i:CC_Cytosol
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--
csml-variable:Double
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dsRNA:RIG-1:IPS1
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csml-variable:Double
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NF-kappaB{active}
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e36
cso30:c:Protein
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csml-variable:Double
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10
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0
TRANSPATH | MO000000058 |
--
--
e37
cso30:c:EntityBiologicalCompartment
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csml-variable:Double
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--
e38
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--
e39
cso30:c:EntityBiologicalCompartment
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--
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csml-variable:Double
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e40
cso30:c:EntityBiologicalCompartment
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--
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csml-variable:Double
m41
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0
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--
e41
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--
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m42
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0
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--
e42
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--
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e44
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--
e45
cso30:c:EntityBiologicalCompartment
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--
--
csml-variable:Double
m46
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dsRNA:RIG1:IPS1:TRAF6
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e46
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csml-variable:Double
m47
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RIG1:IPS1:TRAF6:TBK1
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e47
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m48
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0
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IKK-i
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e49
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0
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--
e51
cso30:c:EntityBiologicalCompartment
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--
--
csml-variable:Double
m51
0
infinite
0
--
--
e52
cso30:c:EntityBiologicalCompartment
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--
--
csml-variable:Double
m52
0
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0
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--
e53
cso30:c:EntityBiologicalCompartment
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--
--
csml-variable:Double
m53
0
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0
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--
e54
cso30:c:EntityBiologicalCompartment
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--
--
csml-variable:Double
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0
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--
e55
cso30:c:EntityBiologicalCompartment
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--
--
csml-variable:Double
m55
0
infinite
0
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--
e56
cso30:c:EntityBiologicalCompartment
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--
--
csml-variable:Double
m56
0
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0
--
--
e57
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--
--
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m57
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0
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--
e58
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--
--
csml-variable:Double
m58
0
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0
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--
e59
cso30:c:EntityBiologicalCompartment
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--
--
csml-variable:Double
m59
0
infinite
0
--
peptidoglycan:TLR1
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e6
cso30:c:Complex
cso30:i:CC_PlasmaMembrane_IntegralToPlasmaMembrane_
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--
csml-variable:Double
m6
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infinite
0
--
--
e60
cso30:c:EntityBiologicalCompartment
cso30:i:CC_Chromatin
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--
--
csml-variable:Double
m60
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0
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--
e61
cso30:c:EntityBiologicalCompartment
cso30:i:CC_NuclearChromosome
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--
--
csml-variable:Double
m61
0
infinite
0
--
--
e62
cso30:c:EntityBiologicalCompartment
cso30:i:CC_NuclearCentromere
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--
--
csml-variable:Double
m62
0
infinite
0
--
RIG1:IPS1:TRAF6:IKK-i
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e63
cso30:c:Complex
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csml-variable:Double
m64
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0
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RIG1:IPS1:TRAF6:IKK-i
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e64
cso30:c:Complex
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0
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(IRF-3{p})2
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e65
cso30:c:Complex
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csml-variable:Double
m66
0
infinite
0
--
(IRF-3{p})2
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e66
cso30:c:Complex
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m67
0
infinite
0
--
(IRF-7{p})2
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e67
cso30:c:Complex
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csml-variable:Double
m68
0
infinite
0
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(IRF-7{p})2
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e68
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m69
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0
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IPS1:FADD
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e69
cso30:c:Complex
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m70
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--
e7
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--
--
csml-variable:Double
m7
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IPS1:FADD:caspase-8
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e70
cso30:c:Complex
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csml-variable:Double
m71
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IPS1:FADD:capase-10
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e71
cso30:c:Complex
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m72
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dsRNA:TLR3:TRIF
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e72
cso30:c:Complex
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csml-variable:Double
m73
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0
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dsRNA:TLR3:TRIF:TRAF3
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e73
cso30:c:Complex
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--
csml-variable:Double
m74
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infinite
0
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dsRNA:TLR3:TRIF:TRAF6
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e74
cso30:c:Complex
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csml-variable:Double
m75
0
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0
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dsRNA:TLR3:TRIF:TRAF6:RIP1
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e75
cso30:c:Complex
cso30:i:CC_Cytosol
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csml-variable:Double
m77
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infinite
0
--
IRAK1
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e76
cso30:c:Protein
cso30:i:CC_Cytosol
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csml-variable:Double
m78
0
infinite
0
--
MYD88:TRAF3:TRAF6:IKK:IRAK1:IRAK4
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e77
cso30:c:Complex
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csml-variable:Double
m79
0
infinite
0
--
CpG:TLR9:MYD88:TRAF3:TRAF6:IKK:IRAK1:IRAK4
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e78
cso30:c:Complex
cso30:i:CC_Cytosol
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--
csml-variable:Double
m80
0
infinite
0
--
LPS:TLR4:TIRAP
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e79
cso30:c:Complex
cso30:i:CC_PlasmaMembrane_IntegralToPlasmaMembrane_
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csml-variable:Double
m81
0
infinite
0
--
--
e8
cso30:c:EntityBiologicalCompartment
cso30:i:CC_Cell_WithoutCellWall_
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--
--
csml-variable:Double
m8
0
infinite
0
--
LPS:TLR4:TIRAP:MYD88
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e80
cso30:c:Complex
cso30:i:CC_PlasmaMembrane_IntegralToPlasmaMembrane_
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csml-variable:Double
m82
0
infinite
0
--
IRAK1{active}
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e82
cso30:c:Protein
cso30:i:CC_Cell
--
csml-variable:Double
m84
0
infinite
0
--
TRAF6{active}
--
e83
cso30:c:Protein
cso30:i:CC_CellComponent
--
csml-variable:Double
m85
10
infinite
0
InterPro | IPR001841 |
TRANSPATH | MO000000212 |
--
UVE1A
--
e84
cso30:c:Protein
cso30:i:CC_Nucleoplasm
--
--
csml-variable:Double
m86
0
infinite
0
--
TRAF6:UBC13:UVE1A
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e85
cso30:c:Complex
cso30:i:CC_Cytosol
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csml-variable:Double
m87
0
infinite
0
--
TRAF6{ub}:UBC13:UVE1A
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e86
cso30:c:Complex
cso30:i:CC_Cytosol
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--
csml-variable:Double
m88
0
infinite
0
--
--
e9
cso30:c:EntityBiologicalCompartment
cso30:i:CC_Cytoplasm
--
--
--
csml-variable:Double
m9
0
infinite
0
--
MYD88:IRF5
--
e91
cso30:c:Complex
cso30:i:CC_Cytosol
--
--
csml-variable:Double
m93
0
infinite
0
--
NF-kappaB{active}
--
e92
cso30:c:Protein
cso30:i:CC_CellComponent
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csml-variable:Double
m94
10
infinite
0
TRANSPATH | MO000000058 |
--
LPS:TLR4:TRAM
--
e95
cso30:c:Complex
cso30:i:CC_PlasmaMembrane_IntegralToPlasmaMembrane_
--
--
csml-variable:Double
m97
0
infinite
0
--
LPS:TLR4:TRIF
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e96
cso30:c:Complex
cso30:i:CC_PlasmaMembrane_IntegralToPlasmaMembrane_
--
--
csml-variable:Double
m98
0
infinite
0
--
csml-variable:Double
m99
0
infinite
0
--
type I interferons
--
e98
cso30:c:mRNA
cso30:i:CC_Nucleoplasm
--
csml-variable:Double
m100
0
infinite
0
--
MAP kinase
--
e99
cso30:c:Protein
cso30:i:CC_Cell
--
--
csml-variable:Double
m101
0
infinite
0
--
--
and
mass
coefficient1:0.1
coefficient2:1.0
stoichiometry:c1 : 1
stoichiometry:c2 : 1
stoichiometry:c3 : 1
m3963*m5*0.1
nodelay
--
0
PMID: 17303405 TLR1, TLR2 and TLR6 recognize various bacterial components, including peptidoglycan and lipoproteins.
--
and
mass
coefficient1:0.1
coefficient2:1.0
stoichiometry:c28 : 1
stoichiometry:c29 : 1
stoichiometry:c30 : 1
m19828*m27*0.1
nodelay
--
0
PMID: 17303405 TLR3 detects double-stranded (ds) RNA, while TLR7 and TLR9 recognize single-stranded (ss) RNA and unmethylated DNA with CpG motifs, respectively.
p11
p11
cso30:i:ME_Binding
cso30:i:CC_Cell
--
--
and
mass
coefficient1:0.1
coefficient2:1.0
stoichiometry:c31 : 1
stoichiometry:c32 : 1
stoichiometry:c33 : 1
m119368*m3965*0.1
nodelay
--
0
PMID: 17303405 TLR3 detects double-stranded (ds) RNA, while TLR7 and TLR9 recognize single-stranded (ss) RNA and unmethylated DNA with CpG motifs, respectively
--
and
mass
coefficient1:0.1
coefficient2:1.0
stoichiometry:c34 : 1
stoichiometry:c35 : 1
stoichiometry:c36 : 1
m29*m119368*0.1
nodelay
--
0
PMID: 17303405 MDA5 recognizes polyinosinic polycytidylic acid (poly I:C) while RIG-I detects dsRNAs that have been transcribed in vitro.
--
and
mass
coefficient1:0.1
coefficient2:1.0
stoichiometry:c37 : 1
stoichiometry:c38 : 1
stoichiometry:c39 : 1
m119368*m31*0.1
nodelay
--
0
PMID: 17303405 MDA5 recognizes polyinosinic polycytidylic acid (poly I:C) while RIG-I detects dsRNAs that have been transcribed in vitro.
--
and
mass
coefficient1:0.1
coefficient2:1.0
stoichiometry:c40 : 1
stoichiometry:c41 : 1
stoichiometry:c42 : 1
m32*m33*0.1
nodelay
--
0
PMID: 17303405, 16177806, 16125763, 16127453 RIG-I and MDA5 associate with an adaptor protein, interferon-beta promoter stimulator 1 (IPS1)which contains a CARD.
--
and
mass
coefficient1:0.1
coefficient2:1.0
stoichiometry:c43 : 1
stoichiometry:c44 : 1
stoichiometry:c45 : 1
m30*m33*0.1
nodelay
--
0
PMID: 17303405, 16177806, 16125763, 16127453 RIG-I and MDA5 associate with an adaptor protein, interferon-beta promoter stimulator 1 (IPS1)which contains a CARD.
p16
p16
cso30:i:ME_UnknownActivation
cso30:i:CC_Cytosol
--
--
and
mass
coefficient1:0.1
coefficient2:1.0
stoichiometry:c46 : 1
stoichiometry:c48 : 1
stoichiometry:c47 : 1
m36*m71*0.1
nodelay
--
0
PMID: 17303405 Overexpression of IPS1 induced the activation of the interferon promoters as well as NF-¦ÊB. PMID: 17303405, 16585540 FADD interacts with Caspase-8/-10 and IPS1, and a FADD-dependent pathway is responsible for the activation of NF-¦ÊB downstream of IPS1.
--
and
mass
coefficient1:0.1
coefficient2:1.0
stoichiometry:c49 : 1
stoichiometry:c50 : 1
stoichiometry:c51 : 1
m35*m183*0.1
nodelay
--
0
PMID: 17303405, 16858409 The C-terminal TRAF domain of TRAF3 associates with a TRAF binding domain found in IPS-1.
--
and
mass
coefficient1:0.1
coefficient2:1.0
stoichiometry:c52 : 1
stoichiometry:c53 : 1
stoichiometry:c54 : 1
m47*m3902*0.1
nodelay
--
0
PMID: 17303405 TRAF3 recruits and activates two IKK-related kinases, TBK1 (TANK-binding kinase 1) and IKK-i (inducible I¦ÊB kinase, also known as IKK epsilon).
--
and
mass
coefficient1:0.1
coefficient2:1.0
stoichiometry:c55 : 1
stoichiometry:c56 : 1
m48*0.1
nodelay
--
0
PMID: 17303405 TRAF3 recruits and activates two IKK-related kinases, TBK1 (TANK-binding kinase 1) and IKK-i (inducible I¦ÊB kinase, also known as IKK epsilon).
--
and
mass
coefficient1:0.1
coefficient2:1.0
stoichiometry:c4 : 1
stoichiometry:c5 : 1
stoichiometry:c6 : 1
m3963*m11*0.1
nodelay
--
0
PMID: 17303405 TLR1, TLR2 and TLR6 recognize various bacterial components, including peptidoglycan and lipoproteins.
--
and
mass
coefficient1:0.1
coefficient2:1.0
stoichiometry:c60 : 1
stoichiometry:c61 : 1
m64*0.1
nodelay
--
0
PMID: 17303405 TRAF3 recruits and activates two IKK-related kinases, TBK1 (TANK-binding kinase 1) and IKK-i (inducible I¦ÊB kinase, also known as IKK epsilon).
--
and
mass
coefficient1:0.1
coefficient2:1.0
stoichiometry:c57 : 1
stoichiometry:c58 : 1
stoichiometry:c59 : 1
m63*m47*0.1
nodelay
--
0
PMID: 17303405 TRAF3 recruits and activates two IKK-related kinases, TBK1 (TANK-binding kinase 1) and IKK-i (inducible I¦ÊB kinase, also known as IKK epsilon).
p22
p22
cso30:i:ME_Phosphorylation
cso30:i:CC_Cell
--
--
and
mass
coefficient1:0.1
coefficient2:1.0
stoichiometry:c62 : 1
stoichiometry:c64 : 1
stoichiometry:c63 : 1
m977*m49*0.1
nodelay
--
0
PMID: 17303405, 15800576 Phosphorylation of IRF-3/-7 by these kinases induces formation of homodimers, which then translocate into the nucleus and bind to the ISREs, resulting in the expression of type I interferons and a set of interferon-inducible genes.
p23
p23
cso30:i:ME_Phosphorylation
cso30:i:CC_Cell
--
--
and
mass
coefficient1:0.1
coefficient2:1.0
stoichiometry:c65 : 1
stoichiometry:c67 : 1
stoichiometry:c66 : 1
m977*m65*0.1
nodelay
--
0
PMID: 17303405, 15800576 Phosphorylation of IRF-3/-7 by these kinases induces formation of homodimers, which then translocate into the nucleus and bind to the ISREs, resulting in the expression of type I interferons and a set of interferon-inducible genes.
--
and
mass
coefficient1:0.1
coefficient2:1.0
stoichiometry:c68 : 1
stoichiometry:c69 : 1
m19324*0.1
nodelay
--
0
PMID: 17303405, 15800576 Phosphorylation of IRF-3/-7 by these kinases induces formation of homodimers, which then translocate into the nucleus and bind to the ISREs, resulting in the expression of type I interferons and a set of interferon-inducible genes.
--
and
mass
coefficient1:0.1
coefficient2:1.0
stoichiometry:c70 : 1
stoichiometry:c71 : 1
m66*0.1
nodelay
--
0
PMID: 17303405, 15800576 Phosphorylation of IRF-3/-7 by these kinases induces formation of homodimers, which then translocate into the nucleus and bind to the ISREs, resulting in the expression of type I interferons and a set of interferon-inducible genes.
p26
p26
cso30:i:ME_Phosphorylation
cso30:i:CC_Cell
--
--
and
mass
coefficient1:0.1
coefficient2:1.0
stoichiometry:c72 : 1
stoichiometry:c74 : 1
stoichiometry:c73 : 1
m980*m49*0.1
nodelay
--
0
PMID: 17303405, 15800576 Phosphorylation of IRF-3/-7 by these kinases induces formation of homodimers, which then translocate into the nucleus and bind to the ISREs, resulting in the expression of type I interferons and a set of interferon-inducible genes.
p27
p27
cso30:i:ME_Phosphorylation
cso30:i:CC_Cell
--
--
and
mass
coefficient1:0.1
coefficient2:1.0
stoichiometry:c75 : 1
stoichiometry:c77 : 1
stoichiometry:c76 : 1
m980*m65*0.1
nodelay
--
0
PMID: 17303405, 15800576 Phosphorylation of IRF-3/-7 by these kinases induces formation of homodimers, which then translocate into the nucleus and bind to the ISREs, resulting in the expression of type I interferons and a set of interferon-inducible genes.
p28
p28
cso30:i:ME_UnknownActivation
cso30:i:CC_Cell
--
--
and
mass
coefficient1:0.1
coefficient2:1.0
stoichiometry:c159 : 1
stoichiometry:c161 : 1
stoichiometry:c160 : 1
m219*m92*0.1
nodelay
--
0
PMID: 17303405 TAK1 also activates MAP kinases, leading to the activation of AP-1, which is also critical for the induction of cytokine genes.
--
and
mass
coefficient1:0.1
coefficient2:1.0
stoichiometry:c78 : 1
stoichiometry:c79 : 1
m19325*0.1
nodelay
--
0
PMID: 17303405, 15800576 Phosphorylation of IRF-3/-7 by these kinases induces formation of homodimers, which then translocate into the nucleus and bind to the ISREs, resulting in the expression of type I interferons and a set of interferon-inducible genes.
--
and
mass
coefficient1:0.1
coefficient2:1.0
stoichiometry:c7 : 1
stoichiometry:c8 : 1
stoichiometry:c9 : 1
m3964*m5*0.1
nodelay
--
0
PMID: 17303405 TLR1, TLR2 and TLR6 recognize various bacterial components, including peptidoglycan and lipoproteins.
--
and
mass
coefficient1:0.1
coefficient2:1.0
stoichiometry:c80 : 1
stoichiometry:c81 : 1
m68*0.1
nodelay
--
0
PMID: 17303405, 15800576 Phosphorylation of IRF-3/-7 by these kinases induces formation of homodimers, which then translocate into the nucleus and bind to the ISREs, resulting in the expression of type I interferons and a set of interferon-inducible genes.
--
and
mass
coefficient1:0.1
coefficient2:1.0
stoichiometry:c82 : 1
stoichiometry:c83 : 1
stoichiometry:c84 : 1
m33*m1814*0.1
nodelay
--
0
PMID: 17303405, 16585540 FADD interacts with Caspase-8/-10 and IPS1, and a FADD-dependent pathway is responsible for the activation of NF-¦ÊB downstream of IPS1.
--
and
mass
coefficient1:0.1
coefficient2:1.0
stoichiometry:c85 : 1
stoichiometry:c86 : 1
stoichiometry:c87 : 1
m70*m1815*0.1
nodelay
--
0
PMID: 17303405, 16585540 FADD interacts with Caspase-8/-10 and IPS1, and a FADD-dependent pathway is responsible for the activation of NF-¦ÊB downstream of IPS1.
--
and
mass
coefficient1:0.1
coefficient2:1.0
stoichiometry:c88 : 1
stoichiometry:c89 : 1
stoichiometry:c90 : 1
m70*m1821*0.1
nodelay
--
0
PMID: 17303405, 16585540 FADD interacts with Caspase-8/-10 and IPS1, and a FADD-dependent pathway is responsible for the activation of NF-¦ÊB downstream of IPS1.
p34
p34
cso30:i:ME_UnknownActivation
cso30:i:CC_Cytosol
--
--
and
mass
coefficient1:0.1
coefficient2:1.0
stoichiometry:c91 : 1
stoichiometry:c93 : 1
stoichiometry:c92 : 1
m36*m72*0.1
nodelay
--
0
PMID: 17303405, 16585540 FADD interacts with Caspase-8/-10 and IPS1, and a FADD-dependent pathway is responsible for the activation of NF-¦ÊB downstream of IPS1.
p35
p35
cso30:i:ME_Binding
cso30:i:CC_Cytosol
--
--
and
mass
coefficient1:0.1
coefficient2:1.0
stoichiometry:c94 : 1
stoichiometry:c95 : 1
stoichiometry:c96 : 1
m19314*m18998*0.1
nodelay
--
0
PMID: 17303405 Upon stimulation with poly I:C, TLR3 triggers a signaling cascade via TRIF.
--
and
mass
coefficient1:0.1
coefficient2:1.0
stoichiometry:c97 : 1
stoichiometry:c98 : 1
stoichiometry:c99 : 1
m73*m1872*0.1
nodelay
--
0
PMID: 17303405 Downstream of TRIF are the signaling molecules TRAF3, TRAF6 and receptor-interacting protein-1 (RIP1).
--
and
mass
coefficient1:0.1
coefficient2:1.0
stoichiometry:c100 : 1
stoichiometry:c101 : 1
stoichiometry:c102 : 1
m73*m183*0.1
nodelay
--
0
PMID: 17303405 Downstream of TRIF are the signaling molecules TRAF3, TRAF6 and receptor-interacting protein-1 (RIP1).
--
and
mass
coefficient1:0.1
coefficient2:1.0
stoichiometry:c103 : 1
stoichiometry:c104 : 1
stoichiometry:c105 : 1
m76*m75*0.1
nodelay
--
0
p39
p39
cso30:i:ME_UnknownActivation
cso30:i:CC_Cytosol
--
--
and
mass
coefficient1:0.1
coefficient2:1.0
stoichiometry:c106 : 1
stoichiometry:c108 : 1
stoichiometry:c107 : 1
m36*m77*0.1
nodelay
--
0
PMID: 17303405, 16306936, 16306937 Among these, TRAF6 and RIP1 activate NF-¦ÊB, whereas TRAF3 is responsible for inducing type I interferons.
--
and
mass
coefficient1:0.1
coefficient2:1.0
stoichiometry:c11 : 1
stoichiometry:c12 : 1
stoichiometry:c10 : 1
m11*m3964*0.1
nodelay
--
0
PMID: 17303405 TLR1, TLR2 and TLR6 recognize various bacterial components, including peptidoglycan and lipoproteins.
p40
p40
cso30:i:ME_Binding
cso30:i:CC_Cytosol
--
--
and
mass
coefficient1:0.1
coefficient2:1.0
stoichiometry:c109 : 1
stoichiometry:c110 : 1
stoichiometry:c111 : 1
stoichiometry:c112 : 1
stoichiometry:c113 : 1
stoichiometry:c114 : 1
stoichiometry:c115 : 1
stoichiometry:c116 : 1
m1572*m17258*m78*m1872*m183*m980*m207*0.1
nodelay
--
0
PMID: 17303405, 16306936, 16306937, 15361868, 15492225, 15767370, 16612387 Upon exposure to ssRNA and CpG-DNA, MyD88 forms a complex with IL-1R-associated kinase (IRAK)-4, IRAK-1, TRAF3, TRAF6, IKK-alpha and IRF-7, and this complex is recruited to the TLR
--
and
mass
coefficient1:0.1
coefficient2:1.0
stoichiometry:c117 : 1
stoichiometry:c118 : 1
stoichiometry:c119 : 1
m79*m28*0.1
nodelay
--
0
PMID: 17303405, 16306936, 16306937, 15361868, 15492225, 15767370, 16612387 Upon exposure to ssRNA and CpG-DNA, MyD88 forms a complex with IL-1R-associated kinase (IRAK)-4, IRAK-1, TRAF3, TRAF6, IKK-alpha and IRF-7, and this complex is recruited to the TLR
p42
p42
cso30:i:ME_Binding
cso30:i:CC_Extracellular
--
--
and
mass
coefficient1:0.1
coefficient2:1.0
stoichiometry:c120 : 1
stoichiometry:c121 : 1
stoichiometry:c122 : 1
m6810*m17*0.1
nodelay
--
0
PMID: 17303405 In TLR2 and TLR4 signaling, another adaptor, TIRAP (TIR domain-containing adaptor protein), is required for the recruitment of MyD88 to TLRs.
--
and
mass
coefficient1:0.1
coefficient2:1.0
stoichiometry:c123 : 1
stoichiometry:c124 : 1
stoichiometry:c125 : 1
m1572*m81*0.1
nodelay
--
0
PMID: 17303405 In TLR2 and TLR4 signaling, another adaptor, TIRAP (TIR domain-containing adaptor protein), is required for the recruitment of MyD88 to TLRs.
p44
p44
cso30:i:ME_UnknownActivation
cso30:i:CC_Cytosol
--
--
and
mass
coefficient1:0.1
coefficient2:1.0
stoichiometry:c126 : 1
stoichiometry:c128 : 1
stoichiometry:c127 : 1
m17258*m82*0.1
nodelay
--
0
PMID: 17303405 MyD88 triggers sequential activation of IRAK-4, IRAK-1 and TRAF6.
--
and
mass
coefficient1:0.1
coefficient2:1.0
stoichiometry:c129 : 1
stoichiometry:c131 : 1
stoichiometry:c130 : 1
m78*m83*0.1
nodelay
--
0
PMID: 17303405 MyD88 triggers sequential activation of IRAK-4, IRAK-1 and TRAF6.
p46
p46
cso30:i:ME_UnknownActivation
cso30:i:CC_Cytosol
--
--
and
mass
coefficient1:0.1
coefficient2:1.0
stoichiometry:c132 : 1
stoichiometry:c134 : 1
stoichiometry:c133 : 1
m183*m84*0.1
nodelay
--
0
PMID: 17303405 MyD88 triggers sequential activation of IRAK-4, IRAK-1 and TRAF6.
p47
p47
cso30:i:ME_Binding
cso30:i:CC_Nucleoplasm
--
--
and
mass
coefficient1:0.1
coefficient2:1.0
stoichiometry:c135 : 1
stoichiometry:c136 : 1
stoichiometry:c137 : 1
stoichiometry:c138 : 1
m6443*m86*m85*0.1
nodelay
--
0
PMID: 17303405, 16056267 Together with an ubiquitination E2 enzyme complex consisting of UBC13 and UEV1A, TRAF6 catalyzes the formation of a K63-linked polyubiquitin chain on itself and on IKK-¦Ã/NF-¦ÊB essential modulator (NEMO).
--
and
mass
coefficient1:0.1
coefficient2:1.0
stoichiometry:c139 : 1
stoichiometry:c140 : 1
m87*0.1
nodelay
--
0
PMID: 17303405, 16056267 Together with an ubiquitination E2 enzyme complex consisting of UBC13 and UEV1A, TRAF6 catalyzes the formation of a K63-linked polyubiquitin chain on itself and on IKK-¦Ã/NF-¦ÊB essential modulator (NEMO).
p49
p49
cso30:i:ME_Ubiquitination
cso30:i:CC_Cytosol
--
--
and
mass
coefficient1:0.1
coefficient2:1.0
stoichiometry:c141 : 1
stoichiometry:c143 : 1
stoichiometry:c142 : 1
m1593*m87*0.1
nodelay
--
0
PMID: 17303405, 16056267 Together with an ubiquitination E2 enzyme complex consisting of UBC13 and UEV1A, TRAF6 catalyzes the formation of a K63-linked polyubiquitin chain on itself and on IKK-¦Ã/NF-¦ÊB essential modulator (NEMO).
--
and
mass
coefficient1:0.1
coefficient2:1.0
stoichiometry:c13 : 1
stoichiometry:c14 : 1
stoichiometry:c15 : 1
m3987*m5*0.1
nodelay
--
0
PMID: 17303405 TLR1, TLR2 and TLR6 recognize various bacterial components, including peptidoglycan and lipoproteins.
p50
p50
cso30:i:ME_UnknownActivation
cso30:i:CC_Cytosol
--
--
and
mass
coefficient1:0.1
coefficient2:1.0
stoichiometry:c144 : 1
stoichiometry:c146 : 1
stoichiometry:c145 : 1
m90*m85*0.1
nodelay
--
0
PMID: 17303405 TRAF6 also activates TGF-¦Â-activated kinase 1 (TAK1), which phosphorylates IKK-¦Â and MAP kinase kinase 6.
p51
p51
cso30:i:ME_Phosphorylation
cso30:i:CC_Extracellular
--
--
and
mass
coefficient1:0.1
coefficient2:1.0
stoichiometry:c147 : 1
stoichiometry:c149 : 1
stoichiometry:c148 : 1
m182*m1573*0.1
nodelay
--
0
PMID: 17303405 TRAF6 also activates TGF-¦Â-activated kinase 1 (TAK1), which phosphorylates IKK-¦Â and MAP kinase kinase 6.
p52
p52
cso30:i:ME_Phosphorylation
cso30:i:CC_Cytosol
--
--
and
mass
coefficient1:0.1
coefficient2:1.0
stoichiometry:c150 : 1
stoichiometry:c152 : 1
stoichiometry:c151 : 1
m92*m1573*0.1
nodelay
--
0
PMID: 17303405 TRAF6 also activates TGF-¦Â-activated kinase 1 (TAK1), which phosphorylates IKK-¦Â and MAP kinase kinase 6.
p53
p53
cso30:i:ME_Binding
cso30:i:CC_Cytosol
--
--
and
mass
coefficient1:0.1
coefficient2:1.0
stoichiometry:c153 : 1
stoichiometry:c154 : 1
stoichiometry:c155 : 1
m979*m1572*0.1
nodelay
--
0
PMID: 17303405, 15665823 It was shown that IRF-5 associates with MyD88, and regulates the expression of cytokine genes, but not interferon genes, in response to stimulation with TLR ligands.
--
and
mass
coefficient1:0.1
coefficient2:1.0
stoichiometry:c156 : 1
stoichiometry:c158 : 1
stoichiometry:c157 : 1
m37*m91*0.1
nodelay
--
0
PMID: 17303405 TRAF6- and UBC13-mediated ubiquitination activates the TAK1 complex, resulting in the activation of the IKK complex and nuclear translocation of NF-¦ÊB that initiates the expression of proinflammatory cytokine genes.
p55
p55
cso30:i:ME_UnknownActivation
cso30:i:CC_Cell
--
--
and
mass
coefficient1:0.1
coefficient2:1.0
stoichiometry:c162 : 1
stoichiometry:c164 : 1
stoichiometry:c163 : 1
m31885*m17*0.1
nodelay
--
0
PMID: 17303405, 16688168 On the other hand, activating transcription factor 3 (ATF3) is also rapidly induced in response to LPS, and has been identified as a negative regulator of LPS-induced cytokine gene expression.
p56
p56
cso30:i:ME_Binding
cso30:i:CC_Extracellular
--
--
and
mass
coefficient1:0.1
coefficient2:1.0
stoichiometry:c165 : 1
stoichiometry:c166 : 1
stoichiometry:c167 : 1
m19005*m17*0.1
nodelay
--
0
PMID: 17303405 TLR4 also recruits other TIR containing adaptors, TRAM and TRIF.
p57
p57
cso30:i:ME_Binding
cso30:i:CC_Extracellular
--
--
and
mass
coefficient1:0.1
coefficient2:1.0
stoichiometry:c169 : 1
stoichiometry:c170 : 1
stoichiometry:c168 : 1
m17*m18998*0.1
nodelay
--
0
PMID: 17303405 TLR4 also recruits other TIR containing adaptors, TRAM and TRIF.
--
and
mass
coefficient1:0.1
coefficient2:1.0
stoichiometry:c175 : 1
stoichiometry:c176 : 1
m94*0.1
nodelay
--
0
PMID: 17303405 NF-kB that initiates the expression of proinflammatory cytokine genes
--
and
mass
coefficient1:0.1
coefficient2:1.0
stoichiometry:c171 : 1
stoichiometry:c173 : 1
m67*0.1
nodelay
--
0
PMID: 17303405 Phosphorylation of IRF-3/-7 by these kinases induces formation of homodimers, which then translocate into the nucleus and bind to the ISREs, resulting in the expression of type I interferons
--
and
mass
coefficient1:0.1
coefficient2:1.0
stoichiometry:c16 : 1
stoichiometry:c18 : 1
stoichiometry:c17 : 1
m3987*m11*0.1
nodelay
--
0
PMID: 17303405 TLR1, TLR2 and TLR6 recognize various bacterial components, including peptidoglycan and lipoproteins.
--
and
mass
coefficient1:0.1
coefficient2:1.0
stoichiometry:c172 : 1
stoichiometry:c174 : 1
m69*0.1
nodelay
--
0
PMID: 17303405 Phosphorylation of IRF-3/-7 by these kinases induces formation of homodimers, which then translocate into the nucleus and bind to the ISREs, resulting in the expression of type I interferons
p61
p61
cso30:i:ME_UnknownActivation
cso30:i:CC_Cytosol
--
--
and
mass
coefficient1:0.1
coefficient2:1.0
stoichiometry:c177 : 1
stoichiometry:c179 : 1
stoichiometry:c178 : 1
m101*m3613*0.1
nodelay
--
0
PMID: 17303405 TRAF6 also activates TGF-b-activated kinase 1 (TAK1), which phosphorylates IKK-b and MAP kinase kinase 6; these in turn modulate the activation of NF-kB and MAP kinases, which induce genes involved in inflammatory responses.
--
and
mass
coefficient1:0.1
coefficient2:1.0
stoichiometry:c180 : 1
stoichiometry:c181 : 1
m102*0.1
nodelay
--
0
PMID: 17303405 TRAF6 also activates TGF-b-activated kinase 1 (TAK1), which phosphorylates IKK-b and MAP kinase kinase 6; these in turn modulate the activation of NF-kB and MAP kinases, which induce genes involved in inflammatory responses.
p7
p7
cso30:i:ME_Binding
cso30:i:CC_Extracellular
--
--
and
mass
coefficient1:0.1
coefficient2:1.0
stoichiometry:c19 : 1
stoichiometry:c20 : 1
stoichiometry:c21 : 1
m3961*m155666*0.1
nodelay
--
0
PMID: 17303405 TLR4 and TLR5 are responsible for the recognition of bacterial lipopolysaccharide (LPS) and flagellin, respectively.
p8
p8
cso30:i:ME_Binding
cso30:i:CC_Extracellular
--
--
and
mass
coefficient1:0.1
coefficient2:1.0
stoichiometry:c23 : 1
stoichiometry:c24 : 1
stoichiometry:c22 : 1
m3966*m6485*0.1
nodelay
--
0
PMID: 17303405 TLR4 and TLR5 are responsible for the recognition of bacterial lipopolysaccharide (LPS) and flagellin, respectively.
--
and
mass
coefficient1:0.1
coefficient2:1.0
stoichiometry:c25 : 1
stoichiometry:c26 : 1
stoichiometry:c27 : 1
m19940*m26*0.1
nodelay
--
0
PMID: 17303405 TLR3 detects double-stranded (ds) RNA, while TLR7 and TLR9 recognize single-stranded (ss) RNA and unmethylated DNA with CpG motifs, respectively.
cso30:c:InputProcess
threshold
--
0
1,
--
cso30:c:OutputProcess
threshold
--
0
1,
--
cso30:c:InputProcess
threshold
--
0
1,
--
cso30:c:InputProcess
threshold
--
0
1,
--
cso30:c:InputProcess
threshold
--
0
1,
--
cso30:c:InputAssociation
threshold
--
0
1,
--
cso30:c:InputProcess
threshold
--
0
1,
--
cso30:c:InputProcess
threshold
--
0
1,
--
cso30:c:InputProcess
threshold
--
0
1,
--
cso30:c:InputProcess
threshold
--
0
1,
--
cso30:c:InputProcess
threshold
--
0
1,
--
cso30:c:InputProcess
threshold
--
0
1,
--
cso30:c:InputProcess
threshold
--
0
1,
--
cso30:c:OutputProcess
threshold
--
0
1,
--
cso30:c:InputProcess
threshold
--
0
1,
--
cso30:c:InputProcess
threshold
--
0
1,
--
cso30:c:InputProcess
threshold
--
0
1,
--
cso30:c:OutputProcess
threshold
--
0
1,
--
cso30:c:InputProcess
threshold
--
0
1,
--
cso30:c:OutputProcess
threshold
--
0
1,
--
cso30:c:InputAssociation
threshold
--
0
1,
--
cso30:c:InputProcess
threshold
--
0
1,
--
cso30:c:InputAssociation
threshold
--
0
1,
--
cso30:c:InputAssociation
threshold
--
0
1,
--
cso30:c:InputProcess
threshold
--
0
1,
--
cso30:c:InputProcess
threshold
--
0
1,
--
cso30:c:OutputProcess
threshold
--
0
1,
--
cso30:c:InputProcess
threshold
--
0
1,
--
cso30:c:InputProcess
threshold
--
0
1,
--
cso30:c:OutputProcess
threshold
--
0
1,
--
cso30:c:InputProcess
threshold
--
0
1,
--
cso30:c:OutputProcess
threshold
--
0
1,
--
cso30:c:InputAssociation
threshold
--
0
1,
--
cso30:c:InputProcess
threshold
--
0
1,
--
cso30:c:OutputProcess
threshold
--
0
1,
--
cso30:c:InputAssociation
threshold
--
0
1,
--
cso30:c:InputAssociation
threshold
--
0
1,
--
cso30:c:OutputProcess
threshold
--
0
1,
--
cso30:c:InputProcess
threshold
--
0
1,
--
cso30:c:OutputProcess
threshold
--
0
1,
--
cso30:c:InputAssociation
threshold
--
0
1,
--
cso30:c:InputProcess
threshold
--
0
1,
--
cso30:c:OutputProcess
threshold
--
0
1,
--
cso30:c:InputAssociation
threshold
--
0
1,
--
cso30:c:OutputProcess
threshold
--
0
1,
--
cso30:c:InputAssociation
threshold
--
0
1,
--
cso30:c:InputAssociation
threshold
--
0
1,
--
cso30:c:OutputProcess
threshold
--
0
1,
--
cso30:c:OutputProcess
threshold
--
0
1,
--
cso30:c:OutputProcess
threshold
--
0
1,
--
cso30:c:InputAssociation
threshold
--
0
1,
--
cso30:c:InputAssociation
threshold
--
0
1,
--
cso30:c:OutputProcess
threshold
--
0
1,
--
cso30:c:InputAssociation
threshold
--
0
1,
--
cso30:c:OutputProcess
threshold
--
0
1,
--
cso30:c:InputAssociation
threshold
--
0
1,
--
cso30:c:InputProcess
threshold
--
0
1,
--
cso30:c:InputAssociation
threshold
--
0
1,
--
cso30:c:OutputProcess
threshold
--
0
1,
--
cso30:c:InputProcess
threshold
--
0
1,
--
cso30:c:OutputProcess
threshold
--
0
1,
--
cso30:c:OutputProcess
threshold
--
0
1,
--
cso30:c:InputProcess
threshold
--
0
1,
--
cso30:c:InputProcess
threshold
--
0
1,
--
cso30:c:OutputProcess
threshold
--
0
1,
--
cso30:c:InputProcess
threshold
--
0
1,
--
cso30:c:InputProcess
threshold
--
0
1,
--
cso30:c:OutputProcess
threshold
--
0
1,
--
cso30:c:OutputProcess
threshold
--
0
1,
--
cso30:c:InputProcess
threshold
--
0
1,
--
cso30:c:InputProcess
threshold
--
0
1,
--
cso30:c:OutputProcess
threshold
--
0
1,
--
cso30:c:InputProcess
threshold
--
0
1,
--
cso30:c:InputProcess
threshold
--
0
1,
--
cso30:c:OutputProcess
threshold
--
0
1,
--
cso30:c:InputProcess
threshold
--
0
1,
--
cso30:c:InputProcess
threshold
--
0
1,
--
cso30:c:InputProcess
threshold
--
0
1,
--
cso30:c:InputAssociation
threshold
--
0
1,
--
cso30:c:InputProcess
threshold
--
0
1,
--
cso30:c:InputProcess
threshold
--
0
1,
--
cso30:c:OutputProcess
threshold
--
0
1,
--
cso30:c:OutputProcess
threshold
--
0
1,
--
cso30:c:InputAssociation
threshold
--
0
1,
--
cso30:c:InputAssociation
threshold
--
0
1,
--
cso30:c:InputProcess
threshold
--
0
1,
--
cso30:c:InputProcess
threshold
--
0
1,
--
cso30:c:OutputProcess
threshold
--
0
1,
--
cso30:c:InputAssociation
threshold
--
0
1,
--
cso30:c:OutputProcess
threshold
--
0
1,
--
cso30:c:InputAssociation
threshold
--
0
1,
--
cso30:c:InputProcess
threshold
--
0
1,
--
cso30:c:OutputProcess
threshold
--
0
1,
--
cso30:c:InputProcess
threshold
--
0
1,
--
cso30:c:InputProcess
threshold
--
0
1,
--
cso30:c:InputProcess
threshold
--
0
1,
--
cso30:c:InputProcess
threshold
--
0
1,
--
cso30:c:OutputProcess
threshold
--
0
1,
--
cso30:c:OutputProcess
threshold
--
0
1,
--
cso30:c:InputAssociation
threshold
--
0
1,
--
cso30:c:InputProcess
threshold
--
0
1,
--
cso30:c:InputProcess
threshold
--
0
1,
--
cso30:c:OutputProcess
threshold
--
0
1,
--
cso30:c:InputProcess
threshold
--
0
1,
--
cso30:c:OutputProcess
threshold
--
0
1,
--