Original Literature | Model OverView |
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Publication
Title
RIG-I: tri-ing to discriminate between self and non-self RNA.
Affiliation
School of Biochemistry and Immunology, Trinity College Dublin, Dublin 2,Ireland.
Abstract
The ability to distinguish foreign nucleic acids from abundant self nucleicacids is essential to protect the host from invading pathogens. Several innateimmune surveillance systems have evolved to detect nucleic acids and triggercellular responses to eliminate foreign invaders. For RNA recognition, theseinclude double stranded (ds)RNA-dependent protein kinase, Toll-like receptor(TLR)3, TLR7, TLR8, retinoic acid-inducible gene (RIG)-I and melanomadifferentiation-associated gene 5. In the case of the nucleic-acid-sensing TLRs,endosomal localization is thought to be crucial for providing self versusnon-self discrimination. For RNA-sensing in the cytoplasm, RIG-I was recentlyshown to detect and directly bind to the 5'-end of certain viral RNA genomes,specifically, to a 5'-triphosphate group. Such 5'-triphosphates are generallyremoved from, or masked on, host RNA species, thereby remaining silent to innateimmunity and providing a structural basis for the distinction between self andnon-self RNA. The mechanisms by which MDA5 senses RNA are unclear at present butseem to involve the sensing of dsRNA structures.
PMID
17307033
|
Entity
Caspase-1
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TRANSPATH | MO000016828 |
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dsRNA
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MO000022224
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TRANSPATH | MO000022224 |
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IFN
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TRANSPATH | MO000016828 |
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--
and
mass
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stoichiometry:c1 : 1
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m119368*m1055*0.1
nodelay
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PMID: 17307033,11752661 The first dsRNA-binding protein to be described was PKR (Table 1), a key mediator of the antiviral action of type I interferon (IFN) PMID: 17307033 A pair of dsRNA-binding domains in the N-terminal portion of PKR binds to dsRNA.
--
and
mass
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stoichiometry:c28 : 1
stoichiometry:c30 : 1
stoichiometry:c29 : 1
m20*0.1
nodelay
--
0
PMID: 17307033,17038589 The Pichlmair study also demonstrated that the IAV NS1 protein, which was thought to block IFN induction by sequestering dsRNA, instead blocks by forming a complex with RIG-I to abrogate RIG-I signaling
--
and
mass
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nodelay
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PMID: 17303033 Therefore, during infection, RIG-I probably mediates local IFNa production, which is crucial for the initial antiviral response, whereas TLR7 controls systemic IFNa levels, as pDCs make a substantial contribution to the total IFNa produced during an infection.
--
and
mass
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stoichiometry:c49 : 1
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m25*m27*0.1
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PMID: 17303033,17008311 An additional antiviral effector mechanism involves the production of the inflammatory cytokines interleukin (IL)-1 and IL-18, which are generated by proteolytic processing of their pro-forms through the action of caspase-1
p13
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cso30:i:ME_Processing
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and
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PMID: 17303033,17008311 An additional antiviral effector mechanism involves the production of the inflammatory cytokines interleukin (IL)-1 and IL-18, which are generated by proteolytic processing of their pro-forms through the action of caspase-1
p14
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cso30:i:CC_Cytosol
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--
and
mass
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nodelay
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PMID: 17307033,17008311 Poly(I:C), viral dsRNA and Sendai virus (SeV) all activated caspase-1 through the nucleotide oligomerization domainlike receptor protein Nalp3 (also known as cryopyrin)
p14
p15
cso30:i:ME_UnknownActivation
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--
--
and
mass
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stoichiometry:c45 : 1
stoichiometry:c46 : 1
stoichiometry:c47 : 1
m26*m28*m1765*0.1
nodelay
--
0
PMID: 17307033,17008311 Poly(I:C), viral dsRNA and Sendai virus (SeV) all activated caspase-1 through the nucleotide oligomerization domainlike receptor protein Nalp3 (also known as cryopyrin)
--
and
mass
coefficient1:0.1
coefficient2:1.0
stoichiometry:c21 : 1
stoichiometry:c37 : 1
m14*0.1
nodelay
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PMID: 17307033 Moreover, they found that ssRNA such as that from the influenza virus genome, which is uncapped and has a 50-triphosphate moiety, associated with and activated RIG-I.
p2
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cso30:i:CC_Cytosol
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and
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PMID: 17307033 A pair of dsRNA-binding domains in the N-terminal portion of PKR binds to dsRNA. PKR functions to phosphorylate the a subunit of the translation initiation factor eIF2, thereby inhibiting protein synthesisA pair of dsRNA-binding domains in the N-terminal portion of PKR binds to dsRNA. PKR functions to phosphorylate the a subunit of the translation initiation factor eIF2, thereby inhibiting protein synthesis
--
and
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stoichiometry:c11 : 1
stoichiometry:c12 : 1
m119368*m9*0.1
nodelay
--
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PMID: 17307033,15961631,16043704 The TLR3 ectodomain senses dsRNA both extracellularly and in endosomes, and its structure has been solved recently
--
and
mass
coefficient1:0.1
coefficient2:1.0
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stoichiometry:c14 : 1
stoichiometry:c17 : 1
m11*m19940*0.1
nodelay
--
0
PMID: 17307033 Single-stranded RNA of ssRNA viruses is detected through TLR7 and TLR8, which are located in the endosomal compartment
--
and
mass
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nodelay
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PMID: 17307033 Single-stranded RNA of ssRNA viruses is detected through TLR7 and TLR8, which are located in the endosomal compartment
--
and
mass
coefficient1:0.1
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stoichiometry:c19 : 1
stoichiometry:c34 : 1
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m41844*m11*0.1
nodelay
--
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PMID: 17307033,17038590 Artificial capping or base modification of this 50-triphosphate (as would occur in host RNA) abolished this response, which they showed was mediated by direct binding to RIG-I PMID: 17307033 Moreover, they found that ssRNA such as that from the influenza virus genome, which is uncapped and has a 50-triphosphate moiety, associated with and activated RIG-I.
--
and
mass
coefficient1:0.1
coefficient2:1.0
stoichiometry:c22 : 1
stoichiometry:c23 : 1
stoichiometry:c24 : 1
m76904*m16*0.1
nodelay
--
0
PMID: 17307033,16672351,16625202,16714379 However, a current paradox is that, although negative-stranded paramyxoviruses do not produce detectable amounts of dsRNA, and are detected by RIG-I and not MDA5 their V proteins bind to Mda5 (and not RIG-I) and inhibit downstream signaling
p8
p8
cso30:i:ME_Binding
cso30:i:CC_Cytosol
--
--
and
mass
coefficient1:0.1
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stoichiometry:c5 : 1
stoichiometry:c6 : 1
m3965*m119368*0.1
nodelay
--
0
PMID: 17307033,15961631,16043704 The TLR3 ectodomain senses dsRNA both extracellularly and in endosomes, and its structure has been solved recently
--
and
mass
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coefficient2:1.0
stoichiometry:c25 : 1
stoichiometry:c26 : 1
stoichiometry:c27 : 1
m18*m41844*0.1
nodelay
--
0
PMID: 17307033,17038589 The Pichlmair study also demonstrated that the IAV NS1 protein, which was thought to block IFN induction by sequestering dsRNA, instead blocks by forming a complex with RIG-I to abrogate RIG-I signaling
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