Original Literature | Model OverView |
---|---|
Publication
Title
The interferon regulatory factor family in host defense: mechanism of action.
Affiliation
Laboratory of Molecular Growth Regulation, National Institute of Child Healthand Human Development, National Institutes of Health, Bethesda, MD 20892, USA.ozatok@nih.gov
Abstract
Transcription factors of the interferon regulatory factor (IRF) family commandsthe entire type I interferon (IFN) system from induction of IFNs to diverse IFNresponses, thereby providing a principal basis for host resistance againstpathogens. However, the family has various additional roles. Regulating thedevelopment of the immune system, IRFs shape the establishment and execution ofinnate and adaptive immunity. IRFs also regulate growth and differentiation ofmany cell types, thus playing a role in leukemia and other cancers. In addition,evidence indicates that IRFs confer antiviral mechanisms not directly ascribedto the IFN system. This review deals with the diverse roles of IRFs in hostdefense and discusses the molecular mechanisms by which they regulate targetgene transcription.
PMID
17502370
|
Entity
IKK{active}
--
MO000000248
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m207
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TRANSPATH | MO000000248 |
--
IRF-8
--
MO000007185
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m769
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TRANSPATH | MO000007185 |
--
IRF-1
--
MO000007685
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cso30:i:CC_CellComponent
--
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m970
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InterPro | IPR001346 |
TRANSPATH | MO000007685 |
--
IRF-2
--
MO000007690
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m974
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TRANSPATH | MO000007690 |
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IRF-3
--
MO000007694
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InterPro | IPR008984 |
TRANSPATH | MO000007694 |
--
IRF-4
--
MO000007697
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csml-variable:Double
m978
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InterPro | IPR008984 |
TRANSPATH | MO000007697 |
--
IRF-7
--
MO000007702
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cso30:i:CC_CellComponent
--
csml-variable:Double
m980
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TRANSPATH | MO000007702 |
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MO000016608
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TRANSPATH | MO000016608 |
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TRANSPATH | MO000017462 |
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TRANSPATH | MO000019331 |
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protein remnants
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TRANSPATH | MO000019479 |
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p300
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TRANSPATH | MO000019984 |
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p/CAF
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TRANSPATH | MO000023551 |
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TRANSPATH | MO000041456 |
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IRF-7{p}
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TRANSPATH | MO000041457 |
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PML
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TRANSPATH | MO000045015 |
--
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--
--
csml-variable:Double
m1
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--
e10
cso30:c:EntityBiologicalCompartment
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--
--
csml-variable:Double
m10
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--
IFN
--
e11
cso30:c:Protein
cso30:i:CC_Cytosol
--
--
csml-variable:Double
m11
0
infinite
0
--
csml-variable:Double
m12
0
infinite
0
--
IFN:IFNR:JAK
--
e15
cso30:c:Complex
cso30:i:CC_Cytosol
--
csml-variable:Double
m15
0
infinite
0
--
IRF9
--
e16
cso30:c:Protein
cso30:i:CC_Cytosol
--
--
csml-variable:Double
m16
0
infinite
0
--
Stat1:Stat2:IRF9
--
e17
cso30:c:Complex
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--
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m17
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--
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m18
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0
--
csml-variable:Double
m19
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infinite
0
--
--
e2
cso30:c:EntityBiologicalCompartment
cso30:i:CC_PlasmaMembrane_ExternalSideOfPlasmaMembrane_
--
--
--
csml-variable:Double
m2
0
infinite
0
--
IFN stimulated genes
--
e20
cso30:c:mRNA
cso30:i:CC_Nucleoplasm
--
--
csml-variable:Double
m20
0
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--
PU.1:IRF-4
--
e21
cso30:c:Complex
cso30:i:CC_Cytosol
--
csml-variable:Double
m21
0
infinite
0
--
csml-variable:Double
m22
0
infinite
0
--
csml-variable:Double
m23
0
infinite
0
--
PU.1:IRF-8
--
e24
cso30:c:Complex
cso30:i:CC_Cytosol
--
csml-variable:Double
m24
0
infinite
0
--
csml-variable:Double
m25
0
infinite
0
--
lysosomal protease
--
e26
cso30:c:mRNA
cso30:i:CC_Nucleoplasm
--
--
csml-variable:Double
m26
0
infinite
0
--
endosomal protease
--
e27
cso30:c:mRNA
cso30:i:CC_Nucleoplasm
--
--
csml-variable:Double
m27
0
infinite
0
--
INK4
--
e28
cso30:c:mRNA
cso30:i:CC_Cytosol
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--
csml-variable:Double
m28
0
infinite
0
--
IRF-8
--
e29
cso30:c:mRNA
cso30:i:CC_Nucleoplasm
--
csml-variable:Double
m29
0
infinite
0
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--
e3
cso30:c:EntityBiologicalCompartment
cso30:i:CC_PlasmaMembrane_IntegralToPlasmaMembrane_
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--
--
csml-variable:Double
m3
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0
--
BCR/Abl protein
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e30
cso30:c:Protein
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--
csml-variable:Double
m30
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0
--
type I interferons
--
e31
cso30:c:mRNA
cso30:i:CC_Cytosol
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--
csml-variable:Double
m31
0
infinite
0
--
IL-12p40
--
e32
cso30:c:mRNA
cso30:i:CC_Cytosol
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--
csml-variable:Double
m32
0
infinite
0
--
ligand:TLRs
--
e33
cso30:c:Complex
cso30:i:CC_Cytosol
--
csml-variable:Double
m33
0
infinite
0
--
(IRF-3{p})2
--
e35
cso30:c:Complex
cso30:i:CC_Cytosol
--
csml-variable:Double
m35
0
infinite
0
--
(IRF-3{p})2
--
e36
cso30:c:Complex
cso30:i:CC_Cytosol
--
csml-variable:Double
m36
0
infinite
0
--
IFN-alpha
--
e37
cso30:c:mRNA
cso30:i:CC_Cytosol
--
csml-variable:Double
m37
0
infinite
0
--
IFN-beta
--
e38
cso30:c:mRNA
cso30:i:CC_Cytosol
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csml-variable:Double
m38
0
infinite
0
--
(IRF-7{p})2
--
e39
cso30:c:Complex
cso30:i:CC_Cytosol
--
csml-variable:Double
m39
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infinite
0
--
--
e4
cso30:c:EntityBiologicalCompartment
cso30:i:CC_PlasmaMembrane_InternalSideOfPlasmaMembrane_
--
--
--
csml-variable:Double
m4
0
infinite
0
--
(IRF-7{p})2
--
e40
cso30:c:Complex
cso30:i:CC_Cytosol
--
csml-variable:Double
m40
0
infinite
0
--
NSP1
--
e41
cso30:c:Protein
cso30:i:CC_Cytosol
--
csml-variable:Double
m41
0
infinite
0
--
NSP1:IRF-3
--
e42
cso30:c:Complex
cso30:i:CC_Cytosol
--
csml-variable:Double
m42
0
infinite
0
--
ICP0
--
e43
cso30:c:Protein
cso30:i:CC_Cytosol
--
--
csml-variable:Double
m43
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infinite
0
--
PML:ICP0
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e44
cso30:c:Complex
cso30:i:CC_Cytosol
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csml-variable:Double
m44
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0
--
SUMO
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e45
cso30:c:SmallMolecule
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--
csml-variable:Double
m45
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--
PML{sumo}
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e46
cso30:c:Protein
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--
csml-variable:Double
m46
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infinite
0
--
P protein
--
e47
cso30:c:Protein
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--
csml-variable:Double
m47
0
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--
PML:P protein
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e48
cso30:c:Complex
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--
csml-variable:Double
m48
0
infinite
0
--
INFR
--
e5
cso30:c:Protein
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--
csml-variable:Double
m5
0
infinite
0
--
--
e50
cso30:c:EntityBiologicalCompartment
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--
--
csml-variable:Double
m50
0
infinite
0
--
--
e51
cso30:c:EntityBiologicalCompartment
cso30:i:CC_NuclearPore
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--
--
csml-variable:Double
m51
0
infinite
0
--
--
e52
cso30:c:EntityBiologicalCompartment
cso30:i:CC_NuclearInnerMembrane
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--
--
csml-variable:Double
m52
0
infinite
0
--
--
e53
cso30:c:EntityBiologicalCompartment
cso30:i:CC_NuclearLumen
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--
--
csml-variable:Double
m53
0
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0
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--
e54
cso30:c:EntityBiologicalCompartment
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--
--
csml-variable:Double
m54
0
infinite
0
--
--
e55
cso30:c:EntityBiologicalCompartment
cso30:i:CC_Nucleus
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--
--
csml-variable:Double
m55
0
infinite
0
--
--
e56
cso30:c:EntityBiologicalCompartment
cso30:i:CC_Nucleoplasm
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--
--
csml-variable:Double
m56
0
infinite
0
--
--
e57
cso30:c:EntityBiologicalCompartment
cso30:i:CC_NuclearBody
--
--
--
csml-variable:Double
m57
0
infinite
0
--
--
e58
cso30:c:EntityBiologicalCompartment
cso30:i:CC_Nucleolus
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--
--
csml-variable:Double
m58
0
infinite
0
--
--
e59
cso30:c:EntityBiologicalCompartment
cso30:i:CC_NuclearEnvelope
--
--
--
csml-variable:Double
m59
0
infinite
0
--
IFN:IFNR
--
e6
cso30:c:Complex
cso30:i:CC_Cytosol
--
csml-variable:Double
m6
0
infinite
0
--
--
e60
cso30:c:EntityBiologicalCompartment
cso30:i:CC_Chromatin
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--
--
csml-variable:Double
m60
0
infinite
0
--
--
e61
cso30:c:EntityBiologicalCompartment
cso30:i:CC_NuclearChromosome
--
--
--
csml-variable:Double
m61
0
infinite
0
--
--
e62
cso30:c:EntityBiologicalCompartment
cso30:i:CC_NuclearCentromere
--
--
--
csml-variable:Double
m62
0
infinite
0
--
IRF-8{p}
--
e63
cso30:c:Protein
cso30:i:CC_Cytosol
--
--
csml-variable:Double
m63
0
infinite
0
--
RIG-I:ligand
--
e65
cso30:c:Complex
cso30:i:CC_Cytosol
--
csml-variable:Double
m65
0
infinite
0
--
IRF-1{ace}
--
e67
cso30:c:Protein
cso30:i:CC_Cytosol
--
csml-variable:Double
m67
0
infinite
0
--
IRF-7{ace}
--
e68
cso30:c:Protein
cso30:i:CC_Cytosol
--
csml-variable:Double
m68
0
infinite
0
--
IRF-2{ace}
--
e69
cso30:c:Protein
cso30:i:CC_Cytosol
--
csml-variable:Double
m69
0
infinite
0
--
--
e7
cso30:c:EntityBiologicalCompartment
cso30:i:CC_Cell
--
--
--
csml-variable:Double
m7
0
infinite
0
--
IRF-3:pin1
--
e70
cso30:c:Complex
cso30:i:CC_Cytosol
--
--
csml-variable:Double
m70
0
infinite
0
--
IRF-8:TRAF6
--
e71
cso30:c:Complex
cso30:i:CC_Cytosol
--
csml-variable:Double
m71
0
infinite
0
--
IRF-8{ub}:TRAF6
--
e72
cso30:c:Complex
cso30:i:CC_Cytosol
--
--
csml-variable:Double
m72
0
infinite
0
--
IRF-7{ub}
--
e73
cso30:c:Protein
cso30:i:CC_Cytosol
--
--
csml-variable:Double
m73
0
infinite
0
--
--
e8
cso30:c:EntityBiologicalCompartment
cso30:i:CC_Cell_WithoutCellWall_
--
--
--
csml-variable:Double
m8
0
infinite
0
--
--
e9
cso30:c:EntityBiologicalCompartment
cso30:i:CC_Cytoplasm
--
--
--
csml-variable:Double
m9
0
infinite
0
--
--
and
mass
coefficient1:0.1
coefficient2:1.0
stoichiometry:c1 : 1
stoichiometry:c2 : 1
stoichiometry:c3 : 1
m11*m5*0.1
nodelay
--
0
PMID: 17502370 Following IFN-receptor interaction, a latent cytoplasmic IRF-9 complexes with Stat1 and Stat2 through the activation of the JAK/STAT pathway, binds to the IFN-stimulated response element (ISRE), and stimulates transcription of a large set of IFN-stimulated genes.
p10
p10
cso30:i:ME_Binding
cso30:i:CC_Cytosol
--
--
and
mass
coefficient1:0.1
coefficient2:1.0
stoichiometry:c28 : 1
stoichiometry:c29 : 1
stoichiometry:c30 : 1
m769*m15836*0.1
nodelay
--
0
PMID: 17502370, 15947094, 12453417, 11846986 They not only bind the ISRE, the binding site for all IRF factors, but also bind various Ets/IRF composite elements through their interaction with PU.1, an Ets family transcription factor
--
and
mass
coefficient1:0.1
coefficient2:1.0
stoichiometry:c31 : 1
stoichiometry:c33 : 1
stoichiometry:c32 : 1
m24*m22*0.1
nodelay
--
0
PMID: 17502370, 15947094, 12453417, 11846986 They not only bind the ISRE, the binding site for all IRF factors, but also bind various Ets/IRF composite elements through their interaction with PU.1, an Ets family transcription factor
p12
p12
cso30:i:CE_CellDifferentiation
cso30:i:CC_Cytosol
--
--
PMID: 17502370, 11846985 IRF-8 coordinates myeloid cell growth and differentiation. PMID: 17502370 IRF-8 promotes macrophage differentiation while inhibiting granulocyte development.
PMID: 17502370, 11846985 IRF-8 coordinates myeloid cell growth and differentiation
p14
p14
cso30:i:ME_GeneExpression
cso30:i:CC_Nucleoplasm
--
--
and
mass
coefficient1:0.1
coefficient2:1.0
stoichiometry:c36 : 1
stoichiometry:c37 : 1
m769*0.1
nodelay
--
0
PMID: 17502370, 15947094 It directly stimulates the expression of genes active in macrophages including those for lysosomal and endosomal proteases.
--
and
mass
coefficient1:0.1
coefficient2:1.0
stoichiometry:c39 : 1
stoichiometry:c38 : 1
m769*0.1
nodelay
--
0
PMID: 17502370, 15947094 It directly stimulates the expression of genes active in macrophages including those for lysosomal and endosomal proteases.
--
and
mass
coefficient1:0.1
coefficient2:1.0
stoichiometry:c40 : 1
stoichiometry:c41 : 1
m769*0.1
nodelay
--
0
PMID: 17502370 In myeloid cells IRF-8 negatively regulates cell growth as it inhibits c-myc and stimulates expression of tumor suppressor/inhibitor of cyclin-dependent kinase (INK4).
--
and
mass
coefficient1:0.1
coefficient2:1.0
stoichiometry:c43 : 1
stoichiometry:c42 : 1
1.0*0.1
nodelay
--
0
PMID: 17502370, 11846985 This growth regulation is relevant to CML in humans, where IRF-8 expression is down-regulated by the Bcr/Abl oncoprotein resulting in abnormal growth promotion.
p18
p18
cso30:i:ME_GeneExpression
cso30:i:CC_Cytosol
--
--
and
mass
coefficient1:0.1
coefficient2:1.0
stoichiometry:c45 : 1
stoichiometry:c48 : 1
stoichiometry:c44 : 1
m769*0.1
nodelay
--
0
PMID: 17502370, 15728463, 10861061 IRF-8, but not IRF-4, is required for the expression of proinflammatory cytokines including type I IFN and IL-12p40, indicating that IRF-8 is critically required for cytokine gene expression. PMID: 17502370, 16236719 IRF-4, on the other hand, inhibits expression of proinflammatory cytokine genes.
p19
p19
cso30:i:ME_GeneExpression
cso30:i:CC_Cytosol
--
--
and
mass
coefficient1:0.1
coefficient2:1.0
stoichiometry:c47 : 1
stoichiometry:c49 : 1
stoichiometry:c46 : 1
m769*0.1
nodelay
--
0
PMID: 17502370, 15728463, 10861061 IRF-8, but not IRF-4, is required for the expression of proinflammatory cytokines including type I IFN and IL-12p40, indicating that IRF-8 is critically required for cytokine gene expression. PMID: 17502370, 16236719 IRF-4, on the other hand, inhibits expression of proinflammatory cytokine genes.
p2
p2
cso30:i:ME_UnknownActivation
cso30:i:CC_Cytosol
--
--
and
mass
coefficient1:0.1
coefficient2:1.0
stoichiometry:c7 : 1
stoichiometry:c11 : 1
stoichiometry:c8 : 1
m1357*m15*0.1
nodelay
--
0
PMID: 17502370 Following IFN-receptor interaction, a latent cytoplasmic IRF-9 complexes with Stat1 and Stat2 through the activation of the JAK/STAT pathway, binds to the IFN-stimulated response element (ISRE), and stimulates transcription of a large set of IFN-stimulated genes.
p20
p20
cso30:i:ME_Phosphorylation
cso30:i:CC_Cytosol
--
--
and
mass
coefficient1:0.1
coefficient2:1.0
stoichiometry:c50 : 1
stoichiometry:c54 : 1
stoichiometry:c51 : 1
m977*m207*0.1
nodelay
--
0
PMID: 17502370 Upon activation, IRF-3 and IRF-7 are phosphorylated through the I{kappa}B kinase (IKK) family of kinases, dimerized, and translocated into the nucleus to stimulate IFNbeta and IFN{alpha} transcription.
p21
p21
cso30:i:ME_UnknownActivation
cso30:i:CC_Cytosol
--
--
and
mass
coefficient1:0.1
coefficient2:1.0
stoichiometry:c52 : 1
stoichiometry:c59 : 1
stoichiometry:c53 : 1
m34*m33*0.1
nodelay
--
0
PMID: 17502370 RF-3 and IRF-7 are early IRFs activated by Toll-like receptor (TLR)and other types of signaling that play a pivotal role in the initial induction of type I IFNs. PMID: 17502370 Upon activation, IRF-3 and IRF-7 are phosphorylated through the I{kappa}B kinase (IKK) family of kinases, dimerized, and translocated into the nucleus to stimulate IFNbeta and IFN{alpha} transcription.
--
and
mass
coefficient1:0.1
coefficient2:1.0
stoichiometry:c55 : 1
stoichiometry:c56 : 1
m19324*0.1
nodelay
--
0
PMID: 17502370 Upon activation, IRF-3 and IRF-7 are phosphorylated through the I{kappa}B kinase (IKK) family of kinases, dimerized, and translocated into the nucleus to stimulate IFNbeta and IFN{alpha} transcription.
--
and
mass
coefficient1:0.1
coefficient2:1.0
stoichiometry:c57 : 1
stoichiometry:c58 : 1
m35*0.1
nodelay
--
0
PMID: 17502370 Upon activation, IRF-3 and IRF-7 are phosphorylated through the I{kappa}B kinase (IKK) family of kinases, dimerized, and translocated into the nucleus to stimulate IFNbeta and IFN{alpha} transcription.
--
and
mass
coefficient1:0.1
coefficient2:1.0
stoichiometry:c60 : 1
stoichiometry:c61 : 1
m36*0.1
nodelay
--
0
PMID: 17502370 Upon activation, IRF-3 and IRF-7 are phosphorylated through the I{kappa}B kinase (IKK) family of kinases, dimerized, and translocated into the nucleus to stimulate IFNbeta and IFN{alpha} transcription.
--
and
mass
coefficient1:0.1
coefficient2:1.0
stoichiometry:c63 : 1
stoichiometry:c62 : 1
m36*0.1
nodelay
--
0
PMID: 17502370 Upon activation, IRF-3 and IRF-7 are phosphorylated through the I{kappa}B kinase (IKK) family of kinases, dimerized, and translocated into the nucleus to stimulate IFNbeta and IFN{alpha} transcription.
p26
p26
cso30:i:ME_Phosphorylation
cso30:i:CC_Cytosol
--
--
and
mass
coefficient1:0.1
coefficient2:1.0
stoichiometry:c64 : 1
stoichiometry:c66 : 1
stoichiometry:c65 : 1
m980*m207*0.1
nodelay
--
0
--
--
and
mass
coefficient1:0.1
coefficient2:1.0
stoichiometry:c67 : 1
stoichiometry:c68 : 1
m19325*0.1
nodelay
--
0
--
--
and
mass
coefficient1:0.1
coefficient2:1.0
stoichiometry:c69 : 1
stoichiometry:c70 : 1
m39*0.1
nodelay
--
0
--
--
and
mass
coefficient1:0.1
coefficient2:1.0
stoichiometry:c71 : 1
stoichiometry:c72 : 1
m40*0.1
nodelay
--
0
PMID: 17502370 Upon activation, IRF-3 and IRF-7 are phosphorylated through the I{kappa}B kinase (IKK) family of kinases, dimerized, and translocated into the nucleus to stimulate IFNbeta and IFN{alpha} transcription.
--
and
mass
coefficient1:0.1
coefficient2:1.0
stoichiometry:c4 : 1
stoichiometry:c5 : 1
stoichiometry:c6 : 1
m6*m12*0.1
nodelay
--
0
PMID: 17502370 Following IFN-receptor interaction, a latent cytoplasmic IRF-9 complexes with Stat1 and Stat2 through the activation of the JAK/STAT pathway, binds to the IFN-stimulated response element (ISRE), and stimulates transcription of a large set of IFN-stimulated genes.
--
and
mass
coefficient1:0.1
coefficient2:1.0
stoichiometry:c74 : 1
stoichiometry:c73 : 1
m40*0.1
nodelay
--
0
PMID: 17502370 Upon activation, IRF-3 and IRF-7 are phosphorylated through the I{kappa}B kinase (IKK) family of kinases, dimerized, and translocated into the nucleus to stimulate IFNbeta and IFN{alpha} transcription.
--
and
mass
coefficient1:0.1
coefficient2:1.0
stoichiometry:c75 : 1
stoichiometry:c76 : 1
stoichiometry:c77 : 1
m977*m41*0.1
nodelay
--
0
PMID: 17502370, 15741273 the rotavirus regulatory protein NSP1 binds to and degrades IRF-3 to disable IFN induction.
p32
p32
cso30:i:ME_UnknownDegradation
cso30:i:CC_Cytosol
--
--
and
mass
coefficient1:0.1
coefficient2:1.0
stoichiometry:c78 : 1
stoichiometry:c79 : 1
stoichiometry:c80 : 1
m42*0.1
nodelay
--
0
PMID: 17502370, 15741273 the rotavirus regulatory protein NSP1 binds to and degrades IRF-3 to disable IFN induction.
--
and
mass
coefficient1:0.1
coefficient2:1.0
stoichiometry:c81 : 1
stoichiometry:c82 : 1
stoichiometry:c83 : 1
m22678*m43*0.1
nodelay
--
0
PMID: 17502370 ICP0 interacts with PML and affects SUMO (small ubiquitin-related modifier) modification of PML, thereby counteracting PML inhibition of viral replication.
p34
p34
cso30:i:ME_Sumoylation
cso30:i:CC_Nucleoplasm
--
--
and
mass
coefficient1:0.1
coefficient2:1.0
stoichiometry:c84 : 1
stoichiometry:c85 : 1
stoichiometry:c87 : 1
stoichiometry:c86 : 1
m22678*m45*0.1
nodelay
--
0
PMID: 17502370 ICP0 interacts with PML and affects SUMO (small ubiquitin-related modifier) modification of PML, thereby counteracting PML inhibition of viral replication.
--
and
mass
coefficient1:0.1
coefficient2:1.0
stoichiometry:c88 : 1
stoichiometry:c89 : 1
stoichiometry:c90 : 1
m47*m22678*0.1
nodelay
--
0
PMID: 17502370, 16689655 Additionally, infection with rabies virus, an RNA virus, also alters PML distribution through the interaction of the viral P protein with PML
p36
p36
cso30:i:ME_Phosphorylation
cso30:i:CC_Cytosol
--
--
and
mass
coefficient1:0.1
coefficient2:1.0
stoichiometry:c91 : 1
stoichiometry:c93 : 1
stoichiometry:c94 : 1
stoichiometry:c92 : 1
m49*0.1
nodelay
--
0
PMID: 17502370, 16914719 IRF-8 is phosphorylated at the tyrosine residues in the DBD, which is inhibited by the protein tyrosine phosphatases SHP1 and SHP2.
p37
p37
cso30:i:ME_Phosphorylation
cso30:i:CC_Cytosol
--
--
and
mass
coefficient1:0.1
coefficient2:1.0
stoichiometry:c95 : 1
stoichiometry:c97 : 1
stoichiometry:c96 : 1
m977*m3902*0.1
nodelay
--
0
PMID: 17502370, 16979567, 16932750 TLR- and retinoic acid inducible gene-I (RIG-I)-mediated phosphorylation of IRF-3 and IRF-7 by IKKi/{epsilon} and Tank-binding kinase-1 (TBK-1) is a prerequisite of IFN induction.
p38
p38
cso30:i:ME_Phosphorylation
cso30:i:CC_Cytosol
--
--
and
mass
coefficient1:0.1
coefficient2:1.0
stoichiometry:c98 : 1
stoichiometry:c100 : 1
stoichiometry:c99 : 1
m977*m1599*0.1
nodelay
--
0
PMID: 17502370, 16979567, 16932750 TLR- and retinoic acid inducible gene-I (RIG-I)-mediated phosphorylation of IRF-3 and IRF-7 by IKKi/{epsilon} and Tank-binding kinase-1 (TBK-1) is a prerequisite of IFN induction.
p39
p39
cso30:i:ME_UnknownActivation
cso30:i:CC_Cytosol
--
--
and
mass
coefficient1:0.1
coefficient2:1.0
stoichiometry:c101 : 1
stoichiometry:c103 : 1
stoichiometry:c102 : 1
m64*m65*0.1
nodelay
--
0
PMID: 17502370, 16979567, 16932750 TLR- and retinoic acid inducible gene-I (RIG-I)-mediated phosphorylation of IRF-3 and IRF-7 by IKKi/{epsilon} and Tank-binding kinase-1 (TBK-1) is a prerequisite of IFN induction.
p4
p4
cso30:i:ME_UnknownActivation
cso30:i:CC_Cytosol
--
--
and
mass
coefficient1:0.1
coefficient2:1.0
stoichiometry:c9 : 1
stoichiometry:c12 : 1
stoichiometry:c10 : 1
m1358*m15*0.1
nodelay
--
0
PMID: 17502370 Following IFN-receptor interaction, a latent cytoplasmic IRF-9 complexes with Stat1 and Stat2 through the activation of the JAK/STAT pathway, binds to the IFN-stimulated response element (ISRE), and stimulates transcription of a large set of IFN-stimulated genes.
p40
p40
cso30:i:ME_UnknownActivation
cso30:i:CC_Cytosol
--
--
and
mass
coefficient1:0.1
coefficient2:1.0
stoichiometry:c104 : 1
stoichiometry:c106 : 1
stoichiometry:c105 : 1
m64*m33*0.1
nodelay
--
0
PMID: 17502370, 16979567, 16932750 TLR- and retinoic acid inducible gene-I (RIG-I)-mediated phosphorylation of IRF-3 and IRF-7 by IKKi/{epsilon} and Tank-binding kinase-1 (TBK-1) is a prerequisite of IFN induction.
p41
p41
cso30:i:ME_UnknownActivation
cso30:i:CC_Cytosol
--
--
and
mass
coefficient1:0.1
coefficient2:1.0
stoichiometry:c107 : 1
stoichiometry:c109 : 1
stoichiometry:c108 : 1
m66*m65*0.1
nodelay
--
0
PMID: 17502370, 16979567, 16932750 TLR- and retinoic acid inducible gene-I (RIG-I)-mediated phosphorylation of IRF-3 and IRF-7 by IKKi/{epsilon} and Tank-binding kinase-1 (TBK-1) is a prerequisite of IFN induction.
p42
p42
cso30:i:ME_UnknownActivation
cso30:i:CC_Cytosol
--
--
and
mass
coefficient1:0.1
coefficient2:1.0
stoichiometry:c110 : 1
stoichiometry:c112 : 1
stoichiometry:c111 : 1
m66*m33*0.1
nodelay
--
0
PMID: 17502370, 16979567, 16932750 TLR- and retinoic acid inducible gene-I (RIG-I)-mediated phosphorylation of IRF-3 and IRF-7 by IKKi/{epsilon} and Tank-binding kinase-1 (TBK-1) is a prerequisite of IFN induction.
p43
p43
cso30:i:ME_Phosphorylation
cso30:i:CC_Cytosol
--
--
and
mass
coefficient1:0.1
coefficient2:1.0
stoichiometry:c113 : 1
stoichiometry:c115 : 1
stoichiometry:c114 : 1
m980*m3902*0.1
nodelay
--
0
PMID: 17502370, 16979567, 16932750 TLR- and retinoic acid inducible gene-I (RIG-I)-mediated phosphorylation of IRF-3 and IRF-7 by IKKi/{epsilon} and Tank-binding kinase-1 (TBK-1) is a prerequisite of IFN induction.
p44
p44
cso30:i:ME_Phosphorylation
cso30:i:CC_Cytosol
--
--
and
mass
coefficient1:0.1
coefficient2:1.0
stoichiometry:c116 : 1
stoichiometry:c118 : 1
stoichiometry:c117 : 1
m980*m1599*0.1
nodelay
--
0
PMID: 17502370, 16979567, 16932750 TLR- and retinoic acid inducible gene-I (RIG-I)-mediated phosphorylation of IRF-3 and IRF-7 by IKKi/{epsilon} and Tank-binding kinase-1 (TBK-1) is a prerequisite of IFN induction.
p45
p45
cso30:i:ME_Acetylation
cso30:i:CC_Cytosol
--
--
and
mass
coefficient1:0.1
coefficient2:1.0
stoichiometry:c119 : 1
stoichiometry:c121 : 1
stoichiometry:c120 : 1
m970*m7326*0.1
nodelay
--
0
PMID: 17502370, 12374802, 12738767 IRF-1, -2, and -7 are acetylated by histone acetylases GCN/PCAF and CBP/p300.
p46
p46
cso30:i:ME_Acetylation
cso30:i:CC_Cytosol
--
--
and
mass
coefficient1:0.1
coefficient2:1.0
stoichiometry:c122 : 1
stoichiometry:c124 : 1
stoichiometry:c123 : 1
m970*m4512*0.1
nodelay
--
0
PMID: 17502370, 12374802, 12738767 IRF-1, -2, and -7 are acetylated by histone acetylases GCN/PCAF and CBP/p300.
p47
p47
cso30:i:ME_Acetylation
cso30:i:CC_Cytosol
--
--
and
mass
coefficient1:0.1
coefficient2:1.0
stoichiometry:c125 : 1
stoichiometry:c127 : 1
stoichiometry:c126 : 1
m970*m2282*0.1
nodelay
--
0
PMID: 17502370, 12374802, 12738767 IRF-1, -2, and -7 are acetylated by histone acetylases GCN/PCAF and CBP/p300.
p48
p48
cso30:i:ME_Acetylation
cso30:i:CC_Cytosol
--
--
and
mass
coefficient1:0.1
coefficient2:1.0
stoichiometry:c128 : 1
stoichiometry:c129 : 1
stoichiometry:c130 : 1
m980*m7326*0.1
nodelay
--
0
PMID: 17502370, 12374802, 12738767 IRF-1, -2, and -7 are acetylated by histone acetylases GCN/PCAF and CBP/p300.
p49
p49
cso30:i:ME_Acetylation
cso30:i:CC_Cytosol
--
--
and
mass
coefficient1:0.1
coefficient2:1.0
stoichiometry:c131 : 1
stoichiometry:c133 : 1
stoichiometry:c132 : 1
m980*m4512*0.1
nodelay
--
0
PMID: 17502370, 12374802, 12738767 IRF-1, -2, and -7 are acetylated by histone acetylases GCN/PCAF and CBP/p300.
--
and
mass
coefficient1:0.1
coefficient2:1.0
stoichiometry:c13 : 1
stoichiometry:c14 : 1
stoichiometry:c15 : 1
stoichiometry:c16 : 1
m14*m13*m16*0.1
nodelay
--
0
PMID: 17502370 Following IFN-receptor interaction, a latent cytoplasmic IRF-9 complexes with Stat1 and Stat2 through the activation of the JAK/STAT pathway, binds to the IFN-stimulated response element (ISRE), and stimulates transcription of a large set of IFN-stimulated genes.
p50
p50
cso30:i:ME_Acetylation
cso30:i:CC_Cytosol
--
--
and
mass
coefficient1:0.1
coefficient2:1.0
stoichiometry:c134 : 1
stoichiometry:c136 : 1
stoichiometry:c135 : 1
m980*m2282*0.1
nodelay
--
0
PMID: 17502370, 12374802, 12738767 IRF-1, -2, and -7 are acetylated by histone acetylases GCN/PCAF and CBP/p300.
p51
p51
cso30:i:ME_Acetylation
cso30:i:CC_Cytosol
--
--
and
mass
coefficient1:0.1
coefficient2:1.0
stoichiometry:c137 : 1
stoichiometry:c139 : 1
stoichiometry:c138 : 1
m974*m4512*0.1
nodelay
--
0
PMID: 17502370, 12374802, 12738767 IRF-1, -2, and -7 are acetylated by histone acetylases GCN/PCAF and CBP/p300.
p52
p52
cso30:i:ME_Acetylation
cso30:i:CC_Cytosol
--
--
and
mass
coefficient1:0.1
coefficient2:1.0
stoichiometry:c140 : 1
stoichiometry:c142 : 1
stoichiometry:c141 : 1
m974*m7326*0.1
nodelay
--
0
PMID: 17502370, 12374802, 12738767 IRF-1, -2, and -7 are acetylated by histone acetylases GCN/PCAF and CBP/p300.
p53
p53
cso30:i:ME_Acetylation
cso30:i:CC_Cytosol
--
--
and
mass
coefficient1:0.1
coefficient2:1.0
stoichiometry:c143 : 1
stoichiometry:c145 : 1
stoichiometry:c144 : 1
m974*m2282*0.1
nodelay
--
0
PMID: 17502370, 12374802, 12738767 IRF-1, -2, and -7 are acetylated by histone acetylases GCN/PCAF and CBP/p300.
p54
p54
cso30:i:ME_Binding
cso30:i:CC_Cytosol
--
--
and
mass
coefficient1:0.1
coefficient2:1.0
stoichiometry:c146 : 1
stoichiometry:c147 : 1
stoichiometry:c148 : 1
m2065*m19324*0.1
nodelay
--
0
PMID: 17502370, 16699525 The peptidylprolyl isomerase Pin1 interacts with IRF-3 and changes the isomerization status in a phosphorylation-dependent manner, leading to rapid destabilization of IRF-3.
--
and
mass
coefficient1:0.1
coefficient2:1.0
stoichiometry:c149 : 1
stoichiometry:c150 : 1
stoichiometry:c152 : 1
stoichiometry:c151 : 1
m183*m49*m33*0.1
nodelay
--
0
PMID: 17502370, 16484229 In a separate study, TRAF6 was shown to associate with IRF-8 in TLR-stimulated macrophages, consistent with the involvement of IRF-8 in ubiquitination-coupled transcription.
--
and
mass
coefficient1:0.1
coefficient2:1.0
stoichiometry:c153 : 1
stoichiometry:c154 : 1
m71*0.1
nodelay
--
0
PMID: 17502370, 16484229 In a separate study, TRAF6 was shown to associate with IRF-8 in TLR-stimulated macrophages, consistent with the involvement of IRF-8 in ubiquitination-coupled transcription.
p57
p57
cso30:i:ME_Ubiquitination
cso30:i:CC_Cytosol
--
--
and
mass
coefficient1:0.1
coefficient2:1.0
stoichiometry:c155 : 1
stoichiometry:c157 : 1
stoichiometry:c158 : 1
stoichiometry:c156 : 1
m980*m183*m33*0.1
nodelay
--
0
PMID: 17502370, 15361868 IRF-7 is ubiquitinated upon TLR stimulation through an E3 ubiquitin ligase, TRAF6.
--
and
mass
coefficient1:0.1
coefficient2:1.0
stoichiometry:c159 : 1
stoichiometry:c160 : 1
m29*0.1
nodelay
--
0
PMID: 17502370, 11846985 This growth regulation is relevant to CML in humans, where IRF-8 expression is down-regulated by the Bcr/Abl oncoprotein resulting in abnormal growth promotion.
--
and
mass
coefficient1:0.1
coefficient2:1.0
stoichiometry:c17 : 1
stoichiometry:c18 : 1
stoichiometry:c19 : 1
m18*m17*0.1
nodelay
--
0
PMID: 17502370 Following IFN-receptor interaction, a latent cytoplasmic IRF-9 complexes with Stat1 and Stat2 through the activation of the JAK/STAT pathway, binds to the IFN-stimulated response element (ISRE), and stimulates transcription of a large set of IFN-stimulated genes.
--
and
mass
coefficient1:0.1
coefficient2:1.0
stoichiometry:c20 : 1
stoichiometry:c21 : 1
m19*0.1
nodelay
--
0
PMID: 17502370 Following IFN-receptor interaction, a latent cytoplasmic IRF-9 complexes with Stat1 and Stat2 through the activation of the JAK/STAT pathway, binds to the IFN-stimulated response element (ISRE), and stimulates transcription of a large set of IFN-stimulated genes.
p8
p8
cso30:i:ME_Binding
cso30:i:CC_Nucleoplasm
--
--
and
mass
coefficient1:0.1
coefficient2:1.0
stoichiometry:c22 : 1
stoichiometry:c23 : 1
stoichiometry:c24 : 1
m978*m15836*0.1
nodelay
--
0
PMID: 17502370, 15947094, 12453417, 11846986 They not only bind the ISRE, the binding site for all IRF factors, but also bind various Ets/IRF composite elements through their interaction with PU.1, an Ets family transcription factor
--
and
mass
coefficient1:0.1
coefficient2:1.0
stoichiometry:c25 : 1
stoichiometry:c26 : 1
stoichiometry:c27 : 1
m21*m22*0.1
nodelay
--
0
PMID: 17502370, 15947094, 12453417, 11846986 They not only bind the ISRE, the binding site for all IRF factors, but also bind various Ets/IRF composite elements through their interaction with PU.1, an Ets family transcription factor
cso30:c:InputProcess
threshold
--
0
1,
--
cso30:c:InputAssociation
threshold
--
0
1,
--
cso30:c:OutputProcess
threshold
--
0
1,
--
cso30:c:InputAssociation
threshold
--
0
1,
--
cso30:c:InputProcess
threshold
--
0
1,
--
cso30:c:InputAssociation
threshold
--
0
1,
--
cso30:c:InputProcess
threshold
--
0
1,
--
cso30:c:OutputProcess
threshold
--
0
1,
--
cso30:c:InputAssociation
threshold
--
0
1,
--
cso30:c:InputAssociation
threshold
--
0
1,
--
cso30:c:InputProcess
threshold
--
0
1,
--
cso30:c:OutputProcess
threshold
--
0
1,
--
cso30:c:InputAssociation
threshold
--
0
1,
--
cso30:c:InputProcess
threshold
--
0
1,
--
cso30:c:OutputProcess
threshold
--
0
1,
--
cso30:c:InputAssociation
threshold
--
0
1,
--
cso30:c:InputProcess
threshold
--
0
1,
--
cso30:c:InputAssociation
threshold
--
0
1,
--
cso30:c:InputAssociation
threshold
--
0
1,
--
cso30:c:InputAssociation
threshold
--
0
1,
--
cso30:c:InputProcess
threshold
--
0
1,
--
cso30:c:InputAssociation
threshold
--
0
1,
--
cso30:c:OutputProcess
threshold
--
0
1,
--
cso30:c:InputAssociation
threshold
--
0
1,
--
cso30:c:InputAssociation
threshold
--
0
1,
--
cso30:c:InputProcess
threshold
--
0
1,
--
cso30:c:OutputProcess
threshold
--
0
1,
--
cso30:c:InputAssociation
threshold
--
0
1,
--
cso30:c:OutputProcess
threshold
--
0
1,
--
cso30:c:InputAssociation
threshold
--
0
1,
--
cso30:c:InputProcess
threshold
--
0
1,
--
cso30:c:InputAssociation
threshold
--
0
1,
--
cso30:c:InputAssociation
threshold
--
0
1,
--
cso30:c:OutputProcess
threshold
--
0
1,
--
cso30:c:InputAssociation
threshold
--
0
1,
--
cso30:c:InputProcess
threshold
--
0
1,
--
cso30:c:OutputProcess
threshold
--
0
1,
--
cso30:c:InputProcess
threshold
--
0
1,
--
cso30:c:InputProcess
threshold
--
0
1,
--
cso30:c:InputAssociation
threshold
--
0
1,
--
cso30:c:InputProcess
threshold
--
0
1,
--
cso30:c:OutputProcess
threshold
--
0
1,
--
cso30:c:InputAssociation
threshold
--
0
1,
--
cso30:c:InputAssociation
threshold
--
0
1,
--
cso30:c:InputAssociation
threshold
--
0
1,
--
cso30:c:OutputProcess
threshold
--
0
1,
--
cso30:c:InputProcess
threshold
--
0
1,
--
cso30:c:InputAssociation
threshold
--
0
1,
--
cso30:c:InputProcess
threshold
--
0
1,
--
cso30:c:InputProcess
threshold
--
0
1,
--
cso30:c:InputProcess
threshold
--
0
1,
--
cso30:c:OutputProcess
threshold
--
0
1,
--
cso30:c:OutputProcess
threshold
--
0
1,
--
cso30:c:InputProcess
threshold
--
0
1,
--
cso30:c:InputAssociation
threshold
--
0
1,
--
cso30:c:InputAssociation
threshold
--
0
1,
--
cso30:c:InputAssociation
threshold
--
0
1,
--
cso30:c:OutputProcess
threshold
--
0
1,
--
cso30:c:InputAssociation
threshold
--
0
1,
--
cso30:c:InputAssociation
threshold
--
0
1,
--
cso30:c:OutputProcess
threshold
--
0
1,
--
cso30:c:InputAssociation
threshold
--
0
1,
--
cso30:c:OutputProcess
threshold
--
0
1,
--
cso30:c:InputAssociation
threshold
--
0
1,
--
cso30:c:InputProcess
threshold
--
0
1,
--
cso30:c:OutputProcess
threshold
--
0
1,
--
cso30:c:InputAssociation
threshold
--
0
1,
--
cso30:c:OutputProcess
threshold
--
0
1,
--
cso30:c:InputAssociation
threshold
--
0
1,
--
cso30:c:OutputProcess
threshold
--
0
1,
--
cso30:c:InputAssociation
threshold
--
0
1,
--
cso30:c:OutputProcess
threshold
--
0
1,
--
cso30:c:InputAssociation
threshold
--
0
1,
--
cso30:c:InputProcess
threshold
--
0
1,
--
cso30:c:InputAssociation
threshold
--
0
1,
--
cso30:c:InputProcess
threshold
--
0
1,
--
cso30:c:InputProcess
threshold
--
0
1,
--
cso30:c:InputAssociation
threshold
--
0
1,
--
cso30:c:OutputProcess
threshold
--
0
1,
--
cso30:c:OutputProcess
threshold
--
0
1,
--
cso30:c:InputAssociation
threshold
--
0
1,
--
cso30:c:InputProcess
threshold
--
0
1,
--
cso30:c:InputProcess
threshold
--
0
1,
--
cso30:c:OutputProcess
threshold
--
0
1,
--
cso30:c:OutputProcess
threshold
--
0
1,
--
cso30:c:InputProcess
threshold
--
0
1,
--
cso30:c:OutputProcess
threshold
--
0
1,
--
cso30:c:InputProcess
threshold
--
0
1,
--
cso30:c:InputProcess
threshold
--
0
1,
--
cso30:c:OutputProcess
threshold
--
0
1,
--
cso30:c:InputInhibitor
threshold
--
0
1,
--
cso30:c:InputProcess
threshold
--
0
1,
--
cso30:c:InputProcess
threshold
--
0
1,
--
cso30:c:OutputProcess
threshold
--
0
1,
--
cso30:c:InputInhibitor
threshold
--
0
1,
--
cso30:c:InputAssociation
threshold
--
0
1,
--
cso30:c:InputProcess
threshold
--
0
1,
--