Original Literature | Model OverView |
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Publication
Title
Nod1 and Nod2 in innate immunity and human inflammatory disorders.
Affiliation
Department of Immunology, Medical Sciences Building, University of Toronto, 1King's College Circle, Toronto, Ontario, Canada M5S 1A8.
Abstract
Nod (nucleotide-binding oligomerization domain) 1 and Nod2 are intracellularPRMs (pattern-recognition molecules) of the NLR (Nod-like receptor) family.These proteins are implicated in the detection of bacterial peptidoglycan andregulate pro-inflammatory pathways in response to bacteria by inducingsignalling pathways such as NF-kappaB (nuclear factor kappaB) and MAPKs(mitogen-activated protein kinases). The Nod proteins act independently of theTLR (Toll-like receptor) cascade, but potently synergize with the latter totrigger innate immune responses to microbes. Most importantly, mutations in Nod2have been shown to confer susceptibility to several chronic inflammatorydisorders, including Crohn's disease, Blau syndrome and early-onset sarcoidosis,underscoring the role of Nod2 in inflammatory homoeostasis. This reviewsummarizes the most recent findings in the field of Nod1 and Nod2 research.
PMID
18031249
|
Entity
NF-kappaB
--
MO000000058
cso30:c:Protein
cso30:i:CC_CellComponent
--
csml-variable:Double
m14
10
infinite
0
TRANSPATH | MO000000058 |
--
TNF-alpha
--
MO000000289
cso30:c:Protein
cso30:i:CC_CellComponent
--
--
csml-variable:Double
m230
10
infinite
0
InterPro | IPR003636 |
TRANSPATH | MO000000289 |
--
RIP2
--
MO000017949
cso30:c:Protein
cso30:i:CC_CellComponent
--
csml-variable:Double
m2684
10
infinite
0
InterPro | IPR000719 |
TRANSPATH | MO000017949 |
--
Nod1
--
MO000020434
cso30:c:Protein
cso30:i:CC_CellComponent
--
csml-variable:Double
m4923
10
infinite
0
InterPro | IPR007091 |
TRANSPATH | MO000020434 |
--
Nod2
--
MO000020461
cso30:c:Protein
cso30:i:CC_CellComponent
--
csml-variable:Double
m4947
10
infinite
0
TRANSPATH | MO000020461 |
--
--
e1
cso30:c:EntityBiologicalCompartment
cso30:i:CC_PlasmaMembrane
--
--
--
csml-variable:Double
m1
0
infinite
0
--
Nod1 oligomer:PGN:RIP2
--
e10
cso30:c:Complex
cso30:i:CC_Cytoplasm
--
csml-variable:Double
m10
0
infinite
0
--
hPepT1
--
e11
cso30:c:Protein
cso30:i:CC_Cytosol
--
--
csml-variable:Double
m11
0
infinite
0
--
NF-kappaB{active}
--
e14
cso30:c:Protein
cso30:i:CC_CellComponent
--
csml-variable:Double
m15
10
infinite
0
TRANSPATH | MO000000058 |
--
Nod1 oligomer:PGN
--
e15
cso30:c:Complex
cso30:i:CC_Cytosol
--
csml-variable:Double
m16
0
infinite
0
--
Nod1 oligomer:PGN:RIP2:IKK
--
e16
cso30:c:Complex
cso30:i:CC_Cytoplasm
--
csml-variable:Double
m17
0
infinite
0
--
RIP2:CARD6
--
e17
cso30:c:Complex
cso30:i:CC_Cytoplasm
--
--
csml-variable:Double
m18
0
infinite
0
--
Nod2 oligomer:PGN
--
e18
cso30:c:Complex
cso30:i:CC_Cytosol
--
csml-variable:Double
m19
0
infinite
0
--
Nod2 oligomer:PGN:RIP2
--
e19
cso30:c:Complex
cso30:i:CC_Cytosol
--
csml-variable:Double
m20
0
infinite
0
--
--
e2
cso30:c:EntityBiologicalCompartment
cso30:i:CC_PlasmaMembrane_ExternalSideOfPlasmaMembrane_
--
--
--
csml-variable:Double
m2
0
infinite
0
--
Nod2 oligomer:PGN:RIP2:IKK
--
e20
cso30:c:Complex
cso30:i:CC_Cytosol
--
csml-variable:Double
m21
0
infinite
0
--
TAK1:Nod2
--
e21
cso30:c:Complex
cso30:i:CC_Cytoplasm
--
--
csml-variable:Double
m22
0
infinite
0
--
SGT1
--
e22
cso30:c:Protein
cso30:i:CC_Cytoplasm
--
csml-variable:Double
m23
0
infinite
0
--
Nod1:SGT1
--
e23
cso30:c:Complex
cso30:i:CC_Cytoplasm
--
--
csml-variable:Double
m24
0
infinite
0
--
Nod2:SGT1
--
e24
cso30:c:Complex
cso30:i:CC_Cytoplasm
--
--
csml-variable:Double
m25
0
infinite
0
--
Nod2:Erbin
--
e25
cso30:c:Complex
cso30:i:CC_Cytoplasm
--
--
csml-variable:Double
m26
0
infinite
0
--
GRIM-19
--
e26
cso30:c:Protein
cso30:i:CC_Cytoplasm
--
--
csml-variable:Double
m27
0
infinite
0
--
Nod2:GRIM-19
--
e27
cso30:c:Complex
cso30:i:CC_Cytoplasm
--
--
csml-variable:Double
m28
0
infinite
0
--
TNF-alphaR
--
e28
cso30:c:Protein
cso30:i:CC_Cytoplasm
--
--
csml-variable:Double
m29
0
infinite
0
--
TNF-alpha:TNF-alphaR
--
e29
cso30:c:Complex
cso30:i:CC_Cytoplasm
--
csml-variable:Double
m30
0
infinite
0
--
--
e3
cso30:c:EntityBiologicalCompartment
cso30:i:CC_PlasmaMembrane_IntegralToPlasmaMembrane_
--
--
--
csml-variable:Double
m3
0
infinite
0
--
IFNgammaR
--
e30
cso30:c:Protein
cso30:i:CC_Cytoplasm
--
--
csml-variable:Double
m31
0
infinite
0
--
IFNgamma:IFNgammaR
--
e31
cso30:c:Complex
cso30:i:CC_Cytoplasm
--
csml-variable:Double
m32
0
infinite
0
--
hBD-2
--
e32
cso30:c:mRNA
cso30:i:CC_Nucleoplasm
--
csml-variable:Double
m33
0
infinite
0
--
hBD-2
--
e33
cso30:c:Protein
cso30:i:CC_Cytoplasm
--
--
csml-variable:Double
m34
0
infinite
0
--
NO
--
e34
cso30:c:SmallMolecule
cso30:i:CC_Cytoplasm
--
csml-variable:Double
m35
0
infinite
0
--
Ligand
--
e35
cso30:c:Protein
cso30:i:CC_Extracellular
--
--
csml-variable:Double
m36
0
infinite
0
--
TLR:Ligand
--
e36
cso30:c:Complex
cso30:i:CC_PlasmaMembrane_InternalSideOfPlasmaMembrane_
--
csml-variable:Double
m37
0
infinite
0
--
TLR
--
e37
cso30:c:Protein
cso30:i:CC_Cytoplasm
--
--
csml-variable:Double
m38
0
infinite
0
--
Il-12
--
e38
cso30:c:mRNA
cso30:i:CC_Cytoplasm
--
csml-variable:Double
m39
0
infinite
0
--
H pylori
--
e39
cso30:c:Cell
cso30:i:CC_Cytoplasm
--
--
csml-variable:Double
m40
0
infinite
0
--
--
e4
cso30:c:EntityBiologicalCompartment
cso30:i:CC_PlasmaMembrane_InternalSideOfPlasmaMembrane_
--
--
--
csml-variable:Double
m4
0
infinite
0
--
C. jejuni
--
e40
cso30:c:Cell
cso30:i:CC_Extracellular
--
--
csml-variable:Double
m41
0
infinite
0
--
Nod2:PGN:NIK
--
e43
cso30:c:Complex
cso30:i:CC_Cytoplasm
--
csml-variable:Double
m46
0
infinite
0
--
Nod1:PGN
--
e5
cso30:c:Complex
cso30:i:CC_Cytosol
--
csml-variable:Double
m5
0
infinite
0
--
--
e50
cso30:c:EntityBiologicalCompartment
cso30:i:CC_NuclearEnvelopeLumen
--
--
--
csml-variable:Double
m50
0
infinite
0
--
--
e51
cso30:c:EntityBiologicalCompartment
cso30:i:CC_NuclearPore
--
--
--
csml-variable:Double
m51
0
infinite
0
--
--
e52
cso30:c:EntityBiologicalCompartment
cso30:i:CC_NuclearInnerMembrane
--
--
--
csml-variable:Double
m52
0
infinite
0
--
--
e53
cso30:c:EntityBiologicalCompartment
cso30:i:CC_NuclearLumen
--
--
--
csml-variable:Double
m53
0
infinite
0
--
--
e54
cso30:c:EntityBiologicalCompartment
cso30:i:CC_NuclearOuterMembrane
--
--
--
csml-variable:Double
m54
0
infinite
0
--
--
e55
cso30:c:EntityBiologicalCompartment
cso30:i:CC_Nucleus
--
--
--
csml-variable:Double
m55
0
infinite
0
--
--
e56
cso30:c:EntityBiologicalCompartment
cso30:i:CC_Nucleoplasm
--
--
--
csml-variable:Double
m56
0
infinite
0
--
--
e57
cso30:c:EntityBiologicalCompartment
cso30:i:CC_NuclearBody
--
--
--
csml-variable:Double
m57
0
infinite
0
--
--
e58
cso30:c:EntityBiologicalCompartment
cso30:i:CC_Nucleolus
--
--
--
csml-variable:Double
m58
0
infinite
0
--
--
e59
cso30:c:EntityBiologicalCompartment
cso30:i:CC_NuclearEnvelope
--
--
--
csml-variable:Double
m59
0
infinite
0
--
Nod2:PGN
--
e6
cso30:c:Complex
cso30:i:CC_Cytosol
--
csml-variable:Double
m6
0
infinite
0
--
--
e60
cso30:c:EntityBiologicalCompartment
cso30:i:CC_Chromatin
--
--
--
csml-variable:Double
m60
0
infinite
0
--
--
e61
cso30:c:EntityBiologicalCompartment
cso30:i:CC_NuclearChromosome
--
--
--
csml-variable:Double
m61
0
infinite
0
--
--
e62
cso30:c:EntityBiologicalCompartment
cso30:i:CC_NuclearCentromere
--
--
--
csml-variable:Double
m62
0
infinite
0
--
--
e7
cso30:c:EntityBiologicalCompartment
cso30:i:CC_Cell
--
--
--
csml-variable:Double
m7
0
infinite
0
--
--
e8
cso30:c:EntityBiologicalCompartment
cso30:i:CC_Cell_WithoutCellWall_
--
--
--
csml-variable:Double
m8
0
infinite
0
--
--
e9
cso30:c:EntityBiologicalCompartment
cso30:i:CC_Cytoplasm
--
--
--
csml-variable:Double
m9
0
infinite
0
--
--
and
mass
coefficient1:0.1
coefficient2:1.0
stoichiometry:c1 : 1
stoichiometry:c2 : 1
stoichiometry:c5 : 1
m4923*m155701*0.1
nodelay
--
0
PMID: 18031249,12527755,12871942,12514169,12796777,12791997 Nod1 and Nod2 detect distinct sub-structures from bacterial peptidoglycan. Whereas Nod2 detects MDP (muramyl dipeptide; MurNAc-L-Ala-D-isoGln), the largest peptidoglycan motif common to Gram-negative and Gram-positive bacteria , Nod1 senses meso-DAP (meso-diaminopimelic acid)-containing peptidoglycan , which is more commonly found in Gram-negative bacteria.
p10
p10
cso30:i:ME_Binding
cso30:i:CC_Cytoplasm
--
--
and
mass
coefficient1:0.1
coefficient2:1.0
stoichiometry:c28 : 1
stoichiometry:c29 : 1
stoichiometry:c30 : 1
m2684*m38143*0.1
nodelay
--
0
PMID: 18031249,16418290 In overexpression studies, CARD6 has been shown to bind RIP2, but affected Nod-dependent NF-kB activation only modestly
--
and
mass
coefficient1:0.1
coefficient2:1.0
stoichiometry:c31 : 1
stoichiometry:c32 : 1
m6*0.1
nodelay
--
0
PMID: 18031249 The current model shows that the oligomerization of Nod proteins following peptidoglycan sensing results in the recruitment of RIP2 (receptor-interacting protein 2), also known as RICK [Rip-like interacting CLARP (caspase-like apoptosis-regulatory protein) kinase], which in turn interacts with the IKK [IkB (inhibitor of NF-kB) kinase] complex, the converging knot of common NF-kB-activating pathways, including TLR-, IL-1- and TNF (tumour necrosis factor)-mediated signalling cascades.
--
and
mass
coefficient1:0.1
coefficient2:1.0
stoichiometry:c33 : 1
stoichiometry:c34 : 1
stoichiometry:c35 : 1
m19*m2684*0.1
nodelay
--
0
PMID: 18031249 The current model shows that the oligomerization of Nod proteins following peptidoglycan sensing results in the recruitment of RIP2 (receptor-interacting protein 2), also known as RICK [Rip-like interacting CLARP (caspase-like apoptosis-regulatory protein) kinase], which in turn interacts with the IKK [IkB (inhibitor of NF-kB) kinase] complex, the converging knot of common NF-kB-activating pathways, including TLR-, IL-1- and TNF (tumour necrosis factor)-mediated signalling cascades.
--
and
mass
coefficient1:0.1
coefficient2:1.0
stoichiometry:c36 : 1
stoichiometry:c37 : 1
stoichiometry:c38 : 1
m20*m207*0.1
nodelay
--
0
PMID: 18031249 The current model shows that the oligomerization of Nod proteins following peptidoglycan sensing results in the recruitment of RIP2 (receptor-interacting protein 2), also known as RICK [Rip-like interacting CLARP (caspase-like apoptosis-regulatory protein) kinase], which in turn interacts with the IKK [IkB (inhibitor of NF-kB) kinase] complex, the converging knot of common NF-kB-activating pathways, including TLR-, IL-1- and TNF (tumour necrosis factor)-mediated signalling cascades.
p9
p14
cso30:i:ME_UnknownActivation
cso30:i:CC_Cytoplasm
--
--
and
mass
coefficient1:0.1
coefficient2:1.0
stoichiometry:c39 : 1
stoichiometry:c40 : 1
stoichiometry:c41 : 1
m21*m14*0.1
nodelay
--
0
PMID: 18031249 The current model shows that the oligomerization of Nod proteins following peptidoglycan sensing results in the recruitment of RIP2 (receptor-interacting protein 2), also known as RICK [Rip-like interacting CLARP (caspase-like apoptosis-regulatory protein) kinase], which in turn interacts with the IKK [IkB (inhibitor of NF-kB) kinase] complex, the converging knot of common NF-kB-activating pathways, including TLR-, IL-1- and TNF (tumour necrosis factor)-mediated signalling cascades.
p15
p15
cso30:i:ME_Binding
cso30:i:CC_Cytoplasm
--
--
and
mass
coefficient1:0.1
coefficient2:1.0
stoichiometry:c42 : 1
stoichiometry:c43 : 1
stoichiometry:c44 : 1
m4947*m1573*0.1
nodelay
--
0
PMID: 18031249,15075345 Similarly, overexpressed TAK1 [TGF (transforming growth factor)-b-activated kinase 1] and Nod2 have been shown to interact
--
and
mass
coefficient1:0.1
coefficient2:1.0
stoichiometry:c45 : 1
stoichiometry:c46 : 1
stoichiometry:c47 : 1
m4923*m23*0.1
nodelay
--
0
PMID: 18031249,17420470,17435760 Two studies have found, using unbiased screens for identifying new Nod partners, that overexpressed Nod1 and Nod2 interact with SGT1 (suppressor of G2 allele of Skp1), a co-chaperone of HSP90 (heat-shock protein 90)
--
and
mass
coefficient1:0.1
coefficient2:1.0
stoichiometry:c48 : 1
stoichiometry:c49 : 1
stoichiometry:c50 : 1
m4947*m23*0.1
nodelay
--
0
PMID: 18031249,17420470,17435760 Two studies have found, using unbiased screens for identifying new Nod partners, that overexpressed Nod1 and Nod2 interact with SGT1 (suppressor of G2 allele of Skp1), a co-chaperone of HSP90 (heat-shock protein 90)
p18
p18
cso30:i:ME_Binding
cso30:i:CC_Cytoplasm
--
--
and
mass
coefficient1:0.1
coefficient2:1.0
stoichiometry:c51 : 1
stoichiometry:c52 : 1
stoichiometry:c53 : 1
m4947*m12851*0.1
nodelay
--
0
PMID: 18031249,16203728,16714539 Two other studies have reported the interaction between Nod2 and Erbin, again relying on unbiased screens
--
and
mass
coefficient1:0.1
coefficient2:1.0
stoichiometry:c54 : 1
stoichiometry:c55 : 1
stoichiometry:c56 : 1
m4947*m27*0.1
nodelay
--
0
PMID: 18031249,15753091 Finally, using a yeast two-hybrid screen, Barnich et al.identified GRIM-19 (gene associated with retinoid-interferon-induced mortality 19) as a Nod2-interacting protein that is important for Nod2-mediated responses
--
and
mass
coefficient1:0.1
coefficient2:1.0
stoichiometry:c3 : 1
stoichiometry:c4 : 1
stoichiometry:c6 : 1
m4947*m155701*0.1
nodelay
--
0
PMID: 18031249,12527755,12871942,12514169,12796777,12791997 Nod1 and Nod2 detect distinct sub-structures from bacterial peptidoglycan. Whereas Nod2 detects MDP (muramyl dipeptide; MurNAc-L-Ala-D-isoGln), the largest peptidoglycan motif common to Gram-negative and Gram-positive bacteria , Nod1 senses meso-DAP (meso-diaminopimelic acid)-containing peptidoglycan , which is more commonly found in Gram-negative bacteria.
--
and
mass
coefficient1:0.1
coefficient2:1.0
stoichiometry:c57 : 1
stoichiometry:c58 : 1
stoichiometry:c59 : 1
m230*m29*0.1
nodelay
--
0
PMID: 18031249,12813035,12671897 Nod1 seems to be more ubiquitously and constitutively expressed in this cell type than Nod2, even though several studies showed the up-regulation of Nod2 by TNFa and IFNg (interferon g) in epithelial cells
--
and
mass
coefficient1:0.1
coefficient2:1.0
stoichiometry:c60 : 1
stoichiometry:c61 : 1
m30*0.1
nodelay
--
0
PMID: 18031249,12813035,12671897 Nod1 seems to be more ubiquitously and constitutively expressed in this cell type than Nod2, even though several studies showed the up-regulation of Nod2 by TNFa and IFNg (interferon g) in epithelial cells
--
and
mass
coefficient1:0.1
coefficient2:1.0
stoichiometry:c62 : 1
stoichiometry:c63 : 1
stoichiometry:c64 : 1
m1639*m31*0.1
nodelay
--
0
PMID: 18031249,12813035,12671897 Nod1 seems to be more ubiquitously and constitutively expressed in this cell type than Nod2, even though several studies showed the up-regulation of Nod2 by TNFa and IFNg (interferon g) in epithelial cells
--
and
mass
coefficient1:0.1
coefficient2:1.0
stoichiometry:c65 : 1
stoichiometry:c66 : 1
m32*0.1
nodelay
--
0
PMID: 18031249,12813035,12671897 Nod1 seems to be more ubiquitously and constitutively expressed in this cell type than Nod2, even though several studies showed the up-regulation of Nod2 by TNFa and IFNg (interferon g) in epithelial cells
p24
p24
cso30:i:ME_GeneExpression
cso30:i:CC_Nucleoplasm
--
--
and
mass
coefficient1:0.1
coefficient2:1.0
stoichiometry:c67 : 1
stoichiometry:c105 : 1
stoichiometry:c68 : 1
m4923*m40*0.1
nodelay
--
0
PMID: 18031249,16513653 A recent study has demonstrated that Nod1 plays a key role in the induction of hBD-2 following infection of gastric cells with H. pylori PMID: 18031249,17521327 Similarly, sensing of C. jejuni by Nod1 was shown to induce hBD2 production, resulting in lowered bacterial colonization
--
and
mass
coefficient1:0.1
coefficient2:1.0
stoichiometry:c69 : 1
stoichiometry:c106 : 1
stoichiometry:c70 : 1
m33*m41*0.1
nodelay
--
0
PMID: 18031249,16513653 A recent study has demonstrated that Nod1 plays a key role in the induction of hBD-2 following infection of gastric cells with H. pylori PMID: 18031249,17521327 Similarly, sensing of C. jejuni by Nod1 was shown to induce hBD2 production, resulting in lowered bacterial colonization
--
and
mass
coefficient1:0.1
coefficient2:1.0
stoichiometry:c73 : 1
stoichiometry:c71 : 1
stoichiometry:c72 : 1
m32*m5*0.1
nodelay
--
0
PMID: 18031249,17579072 iNOS is induced after Nod1 stimulation in mesothelial cells in synergy with IFNg
--
and
mass
coefficient1:0.1
coefficient2:1.0
stoichiometry:c74 : 1
stoichiometry:c75 : 1
m17*0.1
nodelay
--
0
PMID: 18031249,16211083,16585574,17579072 n primary macrophages, Nod1 and Nod2 pathways have been shown to induce the formation of NO
--
and
mass
coefficient1:0.1
coefficient2:1.0
stoichiometry:c76 : 1
stoichiometry:c77 : 1
m21*0.1
nodelay
--
0
PMID: 18031249,16211083,16585574,17579072 In primary macrophages, Nod1 and Nod2 pathways have been shown to induce the formation of NO
--
and
mass
coefficient1:0.1
coefficient2:1.0
stoichiometry:c78 : 1
stoichiometry:c79 : 1
stoichiometry:c80 : 1
m36*m38*0.1
nodelay
--
0
PMID: 18031249,16021602 In human primary DCs, Nod ligands were shown to induce, in synergy with TLR ligands, increased expression of several co-stimulatory molecules, CD80, CD86 and CD40
--
and
mass
coefficient1:0.1
coefficient2:1.0
stoichiometry:c7 : 1
stoichiometry:c8 : 1
stoichiometry:c9 : 1
m12*m11*0.1
nodelay
--
0
PMID: 18031249,15521010 hPepT1 (human peptide transporter 1), a transmembrane transporter of di- or tri-peptides, has been shown to internalize MDP
--
and
mass
coefficient1:0.1
coefficient2:1.0
stoichiometry:c81 : 1
stoichiometry:c82 : 1
stoichiometry:c83 : 1
m5*m37*0.1
nodelay
--
0
PMID: 18031249,16021602 In human primary DCs, Nod ligands were shown to induce, in synergy with TLR ligands, increased expression of several co-stimulatory molecules, CD80, CD86 and CD40
--
and
mass
coefficient1:0.1
coefficient2:1.0
stoichiometry:c84 : 1
stoichiometry:c85 : 1
stoichiometry:c86 : 1
m6*m37*0.1
nodelay
--
0
PMID: 18031249,16021602 In human primary DCs, Nod ligands were shown to induce, in synergy with TLR ligands, increased expression of several co-stimulatory molecules, CD80, CD86 and CD40
--
and
mass
coefficient1:0.1
coefficient2:1.0
stoichiometry:c87 : 1
stoichiometry:c88 : 1
stoichiometry:c89 : 1
m6*m37*0.1
nodelay
--
0
PMID: 18031249,16021602 In human primary DCs, Nod ligands were shown to induce, in synergy with TLR ligands, increased expression of several co-stimulatory molecules, CD80, CD86 and CD40
--
and
mass
coefficient1:0.1
coefficient2:1.0
stoichiometry:c90 : 1
stoichiometry:c92 : 1
stoichiometry:c91 : 1
m5*m37*0.1
nodelay
--
0
PMID: 18031249,16021602 In human primary DCs, Nod ligands were shown to induce, in synergy with TLR ligands, increased expression of several co-stimulatory molecules, CD80, CD86 and CD40
--
and
mass
coefficient1:0.1
coefficient2:1.0
stoichiometry:c93 : 1
stoichiometry:c94 : 1
stoichiometry:c95 : 1
m37*m5*0.1
nodelay
--
0
PMID: 18031249,16021602 In human primary DCs, Nod ligands were shown to induce, in synergy with TLR ligands, increased expression of several co-stimulatory molecules, CD80, CD86 and CD40
--
and
mass
coefficient1:0.1
coefficient2:1.0
stoichiometry:c96 : 1
stoichiometry:c97 : 1
stoichiometry:c98 : 1
m37*m6*0.1
nodelay
--
0
PMID: 18031249,16021602 In human primary DCs, Nod ligands were shown to induce, in synergy with TLR ligands, increased expression of several co-stimulatory molecules, CD80, CD86 and CD40
--
and
mass
coefficient1:0.1
coefficient2:1.0
stoichiometry:c99 : 1
stoichiometry:c101 : 1
stoichiometry:c100 : 1
m37*m5*0.1
nodelay
--
0
PMID:18031249,16299289 Similarly, Nod and TLR ligands co-operate on DCs to trigger IL-12, a crucial cytokine in Th1 immunity
--
and
mass
coefficient1:0.1
coefficient2:1.0
stoichiometry:c103 : 1
stoichiometry:c104 : 1
stoichiometry:c102 : 1
m37*m6*0.1
nodelay
--
0
PMID:18031249,16299289 Similarly, Nod and TLR ligands co-operate on DCs to trigger IL-12, a crucial cytokine in Th1 immunity
p38
p38
cso30:i:ME_UnknownActivation
cso30:i:CC_Cytoplasm
--
--
and
mass
coefficient1:0.1
coefficient2:1.0
stoichiometry:c107 : 1
stoichiometry:c108 : 1
stoichiometry:c109 : 1
m17*m42*0.1
nodelay
--
0
PMID: 18031249,16552041,11463746,17420470 Nod1- and Nod2- dependent pathways also stimulate JNK (c-Jun N-terminal kinase) and p38 MAPK
p38
p39
cso30:i:ME_UnknownActivation
cso30:i:CC_Cytoplasm
--
--
and
mass
coefficient1:0.1
coefficient2:1.0
stoichiometry:c110 : 1
stoichiometry:c111 : 1
stoichiometry:c112 : 1
m21*m42*0.1
nodelay
--
0
PMID: 18031249,16552041,11463746,17420470 Nod1- and Nod2- dependent pathways also stimulate JNK (c-Jun N-terminal kinase) and p38 MAPK
--
and
mass
coefficient1:0.1
coefficient2:1.0
stoichiometry:c11 : 1
stoichiometry:c119 : 1
stoichiometry:c10 : 1
m174*m6*0.1
nodelay
--
0
PMID: 18031249,16552041 In addition, a direct interaction between Nod2 and NIK (NF-kB-inducing kinase) has been reported to trigger the p100/p52-dependent induction of the non-canonical NF-kB pathway in murine primary macrophages
p38
p40
cso30:i:ME_UnknownActivation
cso30:i:CC_Cytoplasm
--
--
and
mass
coefficient1:0.1
coefficient2:1.0
stoichiometry:c113 : 1
stoichiometry:c114 : 1
stoichiometry:c115 : 1
m21*m44*0.1
nodelay
--
0
PMID: 18031249,16552041,11463746,17420470 Nod1- and Nod2- dependent pathways also stimulate JNK (c-Jun N-terminal kinase) and p38 MAPK
p38
p41
cso30:i:ME_UnknownActivation
cso30:i:CC_Cytoplasm
--
--
and
mass
coefficient1:0.1
coefficient2:1.0
stoichiometry:c116 : 1
stoichiometry:c117 : 1
stoichiometry:c118 : 1
m17*m44*0.1
nodelay
--
0
PMID: 18031249,16552041,11463746,17420470 Nod1- and Nod2- dependent pathways also stimulate JNK (c-Jun N-terminal kinase) and p38 MAPK
p5
p5
cso30:i:ME_UnknownActivation
cso30:i:CC_Cytosol
--
--
and
mass
coefficient1:0.1
coefficient2:1.0
stoichiometry:c14 : 1
stoichiometry:c16 : 1
stoichiometry:c120 : 1
stoichiometry:c15 : 1
m14*m173*m46*0.1
nodelay
--
0
PMID: 18031249,16552041 In addition, a direct interaction between Nod2 and NIK (NF-kB-inducing kinase) has been reported to trigger the p100/p52-dependent induction of the non-canonical NF-kB pathway in murine primary macrophages
--
and
mass
coefficient1:0.1
coefficient2:1.0
stoichiometry:c17 : 1
stoichiometry:c18 : 1
m5*0.1
nodelay
--
0
PMID: 18031249 The current model shows that the oligomerization of Nod proteins following peptidoglycan sensing results in the recruitment of RIP2 (receptor-interacting protein 2), also known as RICK [Rip-like interacting CLARP (caspase-like apoptosis-regulatory protein) kinase], which in turn interacts with the IKK [IkB (inhibitor of NF-kB) kinase] complex, the converging knot of common NF-kB-activating pathways, including TLR-, IL-1- and TNF (tumour necrosis factor)-mediated signalling cascades.
--
and
mass
coefficient1:0.1
coefficient2:1.0
stoichiometry:c19 : 1
stoichiometry:c20 : 1
stoichiometry:c21 : 1
m16*m2684*0.1
nodelay
--
0
PMID: 18031249 The current model shows that the oligomerization of Nod proteins following peptidoglycan sensing results in the recruitment of RIP2 (receptor-interacting protein 2), also known as RICK [Rip-like interacting CLARP (caspase-like apoptosis-regulatory protein) kinase], which in turn interacts with the IKK [IkB (inhibitor of NF-kB) kinase] complex, the converging knot of common NF-kB-activating pathways, including TLR-, IL-1- and TNF (tumour necrosis factor)-mediated signalling cascades.
--
and
mass
coefficient1:0.1
coefficient2:1.0
stoichiometry:c22 : 1
stoichiometry:c23 : 1
stoichiometry:c24 : 1
m10*m207*0.1
nodelay
--
0
PMID: 18031249 The current model shows that the oligomerization of Nod proteins following peptidoglycan sensing results in the recruitment of RIP2 (receptor-interacting protein 2), also known as RICK [Rip-like interacting CLARP (caspase-like apoptosis-regulatory protein) kinase], which in turn interacts with the IKK [IkB (inhibitor of NF-kB) kinase] complex, the converging knot of common NF-kB-activating pathways, including TLR-, IL-1- and TNF (tumour necrosis factor)-mediated signalling cascades.
p9
p9
cso30:i:ME_UnknownActivation
cso30:i:CC_Cytoplasm
--
--
and
mass
coefficient1:0.1
coefficient2:1.0
stoichiometry:c25 : 1
stoichiometry:c26 : 1
stoichiometry:c27 : 1
m17*m14*0.1
nodelay
--
0
PMID: 18031249 The current model shows that the oligomerization of Nod proteins following peptidoglycan sensing results in the recruitment of RIP2 (receptor-interacting protein 2), also known as RICK [Rip-like interacting CLARP (caspase-like apoptosis-regulatory protein) kinase], which in turn interacts with the IKK [IkB (inhibitor of NF-kB) kinase] complex, the converging knot of common NF-kB-activating pathways, including TLR-, IL-1- and TNF (tumour necrosis factor)-mediated signalling cascades.
cso30:c:InputAssociation
threshold
--
0
1,
--
cso30:c:InputAssociation
threshold
--
0
1,
--
cso30:c:InputAssociation
threshold
--
0
1,
--
cso30:c:InputAssociation
threshold
--
0
1,
--
cso30:c:InputAssociation
threshold
--
0
1,
--
cso30:c:InputAssociation
threshold
--
0
1,
--
cso30:c:InputProcess
threshold
--
0
1,
--
cso30:c:InputAssociation
threshold
--
0
1,
--
cso30:c:OutputProcess
threshold
--
0
1,
--
cso30:c:InputAssociation
threshold
--
0
1,
--
cso30:c:InputProcess
threshold
--
0
1,
--
cso30:c:InputAssociation
threshold
--
0
1,
--
cso30:c:InputProcess
threshold
--
0
1,
--
cso30:c:InputProcess
threshold
--
0
1,
--
cso30:c:InputAssociation
threshold
--
0
1,
--
cso30:c:InputProcess
threshold
--
0
1,
--
cso30:c:InputAssociation
threshold
--
0
1,
--
cso30:c:OutputProcess
threshold
--
0
1,
--
cso30:c:InputAssociation
threshold
--
0
1,
--
cso30:c:InputProcess
threshold
--
0
1,
--
cso30:c:InputProcess
threshold
--
0
1,
--
cso30:c:InputProcess
threshold
--
0
1,
--
cso30:c:OutputProcess
threshold
--
0
1,
--
cso30:c:InputProcess
threshold
--
0
1,
--
cso30:c:InputAssociation
threshold
--
0
1,
--
cso30:c:InputProcess
threshold
--
0
1,
--
cso30:c:OutputProcess
threshold
--
0
1,
--
cso30:c:OutputProcess
threshold
--
0
1,
--
cso30:c:InputProcess
threshold
--
0
1,
--
cso30:c:OutputProcess
threshold
--
0
1,
--
cso30:c:InputProcess
threshold
--
0
1,
--
cso30:c:InputProcess
threshold
--
0
1,
--
cso30:c:InputProcess
threshold
--
0
1,
--
cso30:c:InputProcess
threshold
--
0
1,
--
cso30:c:OutputProcess
threshold
--
0
1,
--
cso30:c:InputAssociation
threshold
--
0
1,
--
cso30:c:OutputProcess
threshold
--
0
1,
--
cso30:c:OutputProcess
threshold
--
0
1,
--
cso30:c:InputAssociation
threshold
--
0
1,
--
cso30:c:OutputProcess
threshold
--
0
1,
--
cso30:c:InputAssociation
threshold
--
0
1,
--
cso30:c:OutputProcess
threshold
--
0
1,
--
cso30:c:InputAssociation
threshold
--
0
1,
--
cso30:c:InputAssociation
threshold
--
0
1,
--
cso30:c:InputAssociation
threshold
--
0
1,
--
cso30:c:InputAssociation
threshold
--
0
1,
--
cso30:c:InputAssociation
threshold
--
0
1,
--
cso30:c:OutputProcess
threshold
--
0
1,
--
cso30:c:InputProcess
threshold
--
0
1,
--
cso30:c:InputAssociation
threshold
--
0
1,
--
cso30:c:InputAssociation
threshold
--
0
1,
--
cso30:c:InputAssociation
threshold
--
0
1,
--
cso30:c:InputAssociation
threshold
--
0
1,
--
cso30:c:InputAssociation
threshold
--
0
1,
--
cso30:c:OutputProcess
threshold
--
0
1,
--
cso30:c:InputAssociation
threshold
--
0
1,
--
cso30:c:InputAssociation
threshold
--
0
1,
--
cso30:c:OutputProcess
threshold
--
0
1,
--
cso30:c:InputAssociation
threshold
--
0
1,
--
cso30:c:InputAssociation
threshold
--
0
1,
--
cso30:c:InputAssociation
threshold
--
0
1,
--
cso30:c:InputAssociation
threshold
--
0
1,
--
cso30:c:InputAssociation
threshold
--
0
1,
--
cso30:c:InputAssociation
threshold
--
0
1,
--
cso30:c:InputAssociation
threshold
--
0
1,
--