Original Literature | Model OverView |
---|---|
Publication
Title
Are the IKKs and IKK-related kinases TBK1 and IKK-epsilon similarly activated?
Affiliation
Interdisciplinary Cluster for Applied Genoproteomics, University of Liege,Sart-Tilman, 4000 Liege, Belgium.
Abstract
The IkappaB kinases (IKKs) IKK-alpha and IKK-beta, and the IKK-related kinasesTBK1 and IKK-epsilon, have essential roles in innate immunity throughsignal-induced activation of NF-kappaB, IRF3 and IRF7, respectively. Althoughthe signaling events within these pathways have been extensively studied, themechanisms of IKK and IKK-related complex assembly and activation remain poorlydefined. Recent data provide insight into the requirement for scaffold proteinsin complex assembly; NF-kappaB essential modulator coordinates some IKKcomplexes, whereas TANK, NF-kappaB-activating kinase-associated protein 1 (NAP1)or similar to NAP1 TBK1 adaptor (SINTBAD) assemble TBK1 and IKK-epsiloncomplexes. The different scaffold proteins undergo similar post-translationalmodifications, including phosphorylation and non-degradative polyubiquitylation.Moreover, increasing evidence indicates that distinct scaffold proteins assembleIKK, and potentially TBK1 and IKK-epsilon subcomplexes, in a stimulus-specificmanner, which might be a mechanism to achieve specificity.
PMID
18353649
|
Entity
Process
IKK-alpha
--
MO000000210
cso30:c:Protein
cso30:i:CC_CellComponent
--
csml-variable:Double
m181
10
infinite
0
InterPro | IPR000719 |
TRANSPATH | MO000000210 |
--
TRAF6
--
MO000000212
cso30:c:Protein
cso30:i:CC_CellComponent
--
csml-variable:Double
m183
10
infinite
0
InterPro | IPR001841 |
TRANSPATH | MO000000212 |
--
IKK
--
MO000000248
cso30:c:Protein
cso30:i:CC_CellComponent
--
csml-variable:Double
m207
10
infinite
0
TRANSPATH | MO000000248 |
--
TNF-alpha
--
MO000000289
cso30:c:Protein
cso30:i:CC_CellComponent
--
--
csml-variable:Double
m230
10
infinite
0
InterPro | IPR003636 |
TRANSPATH | MO000000289 |
--
IRF-3
--
MO000007694
cso30:c:Protein
cso30:i:CC_CellComponent
--
csml-variable:Double
m977
10
infinite
0
InterPro | IPR008984 |
TRANSPATH | MO000007694 |
--
IRF-7
--
MO000007702
cso30:c:Protein
cso30:i:CC_CellComponent
--
csml-variable:Double
m980
10
infinite
0
TRANSPATH | MO000007702 |
--
PKR(DAI)
--
MO000008179
cso30:c:Protein
cso30:i:CC_CellComponent
--
--
csml-variable:Double
m1055
10
infinite
0
InterPro | IPR000719 |
TRANSPATH | MO000008179 |
--
IKK-gamma
--
MO000016599
cso30:c:Protein
cso30:i:CC_CellComponent
--
csml-variable:Double
m1593
10
infinite
0
InterPro | IPR007087 |
TRANSPATH | MO000016599 |
--
IKK-i
--
MO000016608
cso30:c:Protein
cso30:i:CC_CellComponent
--
csml-variable:Double
m1599
10
infinite
0
InterPro | IPR000719 |
TRANSPATH | MO000016608 |
--
TRAF3
--
MO000016963
cso30:c:Protein
cso30:i:CC_CellComponent
--
csml-variable:Double
m1872
10
infinite
0
InterPro | IPR001841 |
TRANSPATH | MO000016963 |
--
LT-betaR
--
MO000016981
cso30:c:Protein
cso30:i:CC_CellComponent
--
--
csml-variable:Double
m1886
10
infinite
0
InterPro | IPR001368 |
TRANSPATH | MO000016981 |
--
TANK
--
MO000019326
cso30:c:Protein
cso30:i:CC_CellComponent
--
csml-variable:Double
m3897
10
infinite
0
InterPro | IPR007087 |
TRANSPATH | MO000019326 |
--
TBK1
--
MO000019331
cso30:c:Protein
cso30:i:CC_CellComponent
--
csml-variable:Double
m3902
10
infinite
0
InterPro | IPR000719 |
TRANSPATH | MO000019331 |
--
protein remnants
--
MO000019479
cso30:c:Protein
cso30:i:CC_CellComponent
--
csml-variable:Double
m360980
10
infinite
0
TRANSPATH | MO000019479 |
--
dsRNA
--
MO000022224
cso30:c:Protein
cso30:i:CC_CellComponent
--
csml-variable:Double
m119368
10
infinite
0
TRANSPATH | MO000022224 |
--
(TNF-alpha)3:(TNFR1)3
--
MO000038687
cso30:c:Protein
cso30:i:CC_CellComponent
--
csml-variable:Double
m16874
10
infinite
0
TRANSPATH | MO000038687 |
--
dsRNA:TLR3
--
MO000041446
cso30:c:Protein
cso30:i:CC_CellComponent
--
csml-variable:Double
m19314
10
infinite
0
TRANSPATH | MO000041446 |
--
NCKAP1(NAP1)
--
MO000061519
cso30:c:Protein
cso30:i:CC_CellComponent
--
csml-variable:Double
m36417
10
infinite
0
TRANSPATH | MO000061519 |
--
RelA-p65
--
MO000080947
cso30:c:Protein
cso30:i:CC_CellComponent
--
csml-variable:Double
m55295
10
infinite
0
InterPro | IPR008967 |
TRANSPATH | MO000080947 |
--
--
e1
cso30:c:EntityBiologicalCompartment
cso30:i:CC_PlasmaMembrane
--
--
--
csml-variable:Double
m1
0
infinite
0
--
--
e10
cso30:c:EntityBiologicalCompartment
cso30:i:CC_Cytosol
--
--
--
csml-variable:Double
m10
0
infinite
0
--
p52:RelB
--
e100
cso30:c:Complex
cso30:i:CC_Cytosol
--
csml-variable:Double
m100
0
infinite
0
--
p52:RelB
--
e101
cso30:c:Complex
cso30:i:CC_Cytosol
--
--
csml-variable:Double
m101
0
infinite
0
--
TANK:TBK1:IKK-i:IKK
--
e102
cso30:c:Complex
cso30:i:CC_Cytosol
--
--
csml-variable:Double
m102
0
infinite
0
--
--
e11
cso30:c:EntityBiologicalCompartment
cso30:i:CC_EndosomeMembrane
--
--
--
csml-variable:Double
m11
0
infinite
0
--
--
e12
cso30:c:EntityBiologicalCompartment
cso30:i:CC_EndosomeLumen
--
--
--
csml-variable:Double
m12
0
infinite
0
--
LPS:TLR4:TRIF
--
e13
cso30:c:Complex
cso30:i:CC_Cytosol
--
csml-variable:Double
m13
0
infinite
0
--
TLR3:dsRNA:TRIF
--
e14
cso30:c:Complex
cso30:i:CC_Cytosol
--
csml-variable:Double
m14
0
infinite
0
--
LPS:TLR4:TRIF:TRAF3
--
e15
cso30:c:Complex
cso30:i:CC_Cytosol
--
csml-variable:Double
m15
0
infinite
0
--
viral nucleic acid
--
e16
cso30:c:Dna
cso30:i:CC_Cytosol
--
csml-variable:Double
m16
0
infinite
0
--
TLR9:viral nucleic acid
--
e17
cso30:c:Complex
cso30:i:CC_Cytosol
--
--
csml-variable:Double
m17
0
infinite
0
--
TLR8:viral nulceic acid
--
e18
cso30:c:Complex
cso30:i:CC_Cytosol
--
--
csml-variable:Double
m18
0
infinite
0
--
TLR7:viral nucleic acid
--
e19
cso30:c:Complex
cso30:i:CC_Cytosol
--
--
csml-variable:Double
m19
0
infinite
0
--
--
e2
cso30:c:EntityBiologicalCompartment
cso30:i:CC_PlasmaMembrane_ExternalSideOfPlasmaMembrane_
--
--
--
csml-variable:Double
m2
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infinite
0
--
TANK:TBK1:IKK-i
--
e20
cso30:c:Complex
cso30:i:CC_Cytosol
--
csml-variable:Double
m20
0
infinite
0
--
NAP1:TBK1
--
e22
cso30:c:Complex
cso30:i:CC_Cytosol
--
--
csml-variable:Double
m22
0
infinite
0
--
SINTBAD
--
e23
cso30:c:Protein
cso30:i:CC_Cytosol
--
--
csml-variable:Double
m23
0
infinite
0
--
TBK1:IKK-i:SINTBAD
--
e24
cso30:c:Complex
cso30:i:CC_Cytosol
--
csml-variable:Double
m24
0
infinite
0
--
NAP1:TBK1:IKK-i
--
e25
cso30:c:Complex
cso30:i:CC_Cytosol
--
csml-variable:Double
m25
0
infinite
0
--
TANK:IRF-7
--
e26
cso30:c:Complex
cso30:i:CC_Cytosol
--
--
csml-variable:Double
m26
0
infinite
0
--
TANK:IKK-gamma
--
e27
cso30:c:Complex
cso30:i:CC_Cytosol
--
--
csml-variable:Double
m27
0
infinite
0
--
TLR3:dsRNA:TRIF:TRAF3
--
e28
cso30:c:Complex
cso30:i:CC_PlasmaMembrane_IntegralToPlasmaMembrane_
--
csml-variable:Double
m28
0
infinite
0
--
TLR3:dsRNA:TRIF:TRAF3:NAP1:IKK-i:TBK1
--
e29
cso30:c:Complex
cso30:i:CC_PlasmaMembrane_IntegralToPlasmaMembrane_
--
csml-variable:Double
m29
0
infinite
0
--
--
e3
cso30:c:EntityBiologicalCompartment
cso30:i:CC_PlasmaMembrane_IntegralToPlasmaMembrane_
--
--
--
csml-variable:Double
m3
0
infinite
0
--
IRF-3{p}
--
e30
cso30:c:Protein
cso30:i:CC_CellComponent
--
csml-variable:Double
m30
10
infinite
0
InterPro | IPR008984 |
TRANSPATH | MO000007694 |
--
IRF-3{p}:IRF-3{p}
--
e31
cso30:c:Complex
cso30:i:CC_Cytosol
--
csml-variable:Double
m31
0
infinite
0
--
IRF-3{p}:IRF-3{p}
--
e32
cso30:c:Complex
cso30:i:CC_Cytosol
--
csml-variable:Double
m32
0
infinite
0
--
ISRE
--
e33
cso30:c:Dna
cso30:i:CC_Nucleoplasm
--
--
csml-variable:Double
m33
0
infinite
0
--
IRF-3{p}:IRF-3{p}:ISRE
--
e34
cso30:c:Complex
cso30:i:CC_Nucleoplasm
--
csml-variable:Double
m34
0
infinite
0
--
IFN inducible genes
--
e35
cso30:c:mRNA
cso30:i:CC_Nucleoplasm
--
csml-variable:Double
m35
0
infinite
0
--
TLR3:dsRNA:TRIF:TRAF3:RIP1:TRAF6
--
e37
cso30:c:Complex
cso30:i:CC_PlasmaMembrane_IntegralToPlasmaMembrane_
--
csml-variable:Double
m37
0
infinite
0
--
TLR3:dsRNA:TRIF:TRAF3:RIP1{ub}:TRAF6
--
e38
cso30:c:Complex
cso30:i:CC_PlasmaMembrane_IntegralToPlasmaMembrane_
--
csml-variable:Double
m38
0
infinite
0
--
TAK1:TAB2
--
e39
cso30:c:Complex
cso30:i:CC_Cytosol
--
csml-variable:Double
m39
0
infinite
0
--
--
e4
cso30:c:EntityBiologicalCompartment
cso30:i:CC_PlasmaMembrane_InternalSideOfPlasmaMembrane_
--
--
--
csml-variable:Double
m4
0
infinite
0
--
TLR3:dsRNA:TRIF:TRAF3:RIP1{ub}:TRAF6:TAB2:TAK1
--
e40
cso30:c:Complex
cso30:i:CC_PlasmaMembrane_IntegralToPlasmaMembrane_
--
csml-variable:Double
m40
0
infinite
0
--
IKK{active}
--
e41
cso30:c:Protein
cso30:i:CC_CellComponent
--
csml-variable:Double
m41
10
infinite
0
TRANSPATH | MO000000248 |
--
p65:p50(NF-KappaB)
--
e42
cso30:c:Complex
cso30:i:CC_Cytosol
--
csml-variable:Double
m43
0
infinite
0
--
p65:p50:IKBalpha
--
e44
cso30:c:Complex
cso30:i:CC_Cytosol
--
csml-variable:Double
m45
0
infinite
0
--
p65:p50:IKBalpha{p}
--
e45
cso30:c:Complex
cso30:i:CC_Cytosol
--
csml-variable:Double
m46
0
infinite
0
--
p65:p50:IKBalpha{p}{ub}
--
e46
cso30:c:Complex
cso30:i:CC_Cytosol
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csml-variable:Double
m47
0
infinite
0
--
p65:p50
--
e48
cso30:c:Complex
cso30:i:CC_Cytosol
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csml-variable:Double
m49
0
infinite
0
--
proinflammatory genes
--
e49
cso30:c:mRNA
cso30:i:CC_NuclearCentromere
--
--
csml-variable:Double
m63
0
infinite
0
--
LPS:TLR4
--
e5
cso30:c:Complex
cso30:i:CC_Cytosol
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csml-variable:Double
m5
0
infinite
0
--
--
e50
cso30:c:EntityBiologicalCompartment
cso30:i:CC_NuclearEnvelopeLumen
--
--
--
csml-variable:Double
m50
0
infinite
0
--
--
e51
cso30:c:EntityBiologicalCompartment
cso30:i:CC_NuclearPore
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--
--
csml-variable:Double
m51
0
infinite
0
--
--
e52
cso30:c:EntityBiologicalCompartment
cso30:i:CC_NuclearInnerMembrane
--
--
--
csml-variable:Double
m52
0
infinite
0
--
--
e53
cso30:c:EntityBiologicalCompartment
cso30:i:CC_NuclearLumen
--
--
--
csml-variable:Double
m53
0
infinite
0
--
--
e54
cso30:c:EntityBiologicalCompartment
cso30:i:CC_NuclearOuterMembrane
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--
--
csml-variable:Double
m54
0
infinite
0
--
--
e55
cso30:c:EntityBiologicalCompartment
cso30:i:CC_Nucleus
--
--
--
csml-variable:Double
m55
0
infinite
0
--
--
e56
cso30:c:EntityBiologicalCompartment
cso30:i:CC_Nucleoplasm
--
--
--
csml-variable:Double
m56
0
infinite
0
--
--
e57
cso30:c:EntityBiologicalCompartment
cso30:i:CC_NuclearBody
--
--
--
csml-variable:Double
m57
0
infinite
0
--
--
e58
cso30:c:EntityBiologicalCompartment
cso30:i:CC_Nucleolus
--
--
--
csml-variable:Double
m58
0
infinite
0
--
--
e59
cso30:c:EntityBiologicalCompartment
cso30:i:CC_NuclearEnvelope
--
--
--
csml-variable:Double
m59
0
infinite
0
--
--
e6
cso30:c:EntityBiologicalCompartment
cso30:i:CC_Endosome
--
--
--
csml-variable:Double
m6
0
infinite
0
--
--
e60
cso30:c:EntityBiologicalCompartment
cso30:i:CC_Chromatin
--
--
--
csml-variable:Double
m60
0
infinite
0
--
--
e61
cso30:c:EntityBiologicalCompartment
cso30:i:CC_NuclearChromosome
--
--
--
csml-variable:Double
m61
0
infinite
0
--
--
e62
cso30:c:EntityBiologicalCompartment
cso30:i:CC_NuclearCentromere
--
--
--
csml-variable:Double
m62
0
infinite
0
--
LPS:TLR4:TRIF:TRAF3:TANK:TBK1:IKK-i
--
e63
cso30:c:Complex
cso30:i:CC_Cytosol
--
csml-variable:Double
m64
0
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0
--
TLR3:dsRNA:TRIF:TRAF3:RIP1
--
e64
cso30:c:Complex
cso30:i:CC_PlasmaMembrane_IntegralToPlasmaMembrane_
--
csml-variable:Double
m65
0
infinite
0
--
LPS:TLR4:Tollip
--
e65
cso30:c:Complex
cso30:i:CC_Cytosol
--
csml-variable:Double
m66
0
infinite
0
--
LPS:TLR4:Tollip:Mal
--
e66
cso30:c:Complex
cso30:i:CC_PlasmaMembrane_IntegralToPlasmaMembrane_
--
csml-variable:Double
m67
0
infinite
0
--
LPS:TLR4:Tollip:Mal:MyD88
--
e67
cso30:c:Complex
cso30:i:CC_PlasmaMembrane_IntegralToPlasmaMembrane_
--
csml-variable:Double
m68
0
infinite
0
--
LPS:TLR4:Tollip:Mal:MyD88:IRAK1
--
e68
cso30:c:Complex
cso30:i:CC_PlasmaMembrane_IntegralToPlasmaMembrane_
--
csml-variable:Double
m42
0
infinite
0
--
LPS:TLR4:Tollip:Mal:MyD88:IRAK1{p}
--
e69
cso30:c:Complex
cso30:i:CC_PlasmaMembrane_IntegralToPlasmaMembrane_
--
csml-variable:Double
m69
0
infinite
0
--
--
e7
cso30:c:EntityBiologicalCompartment
cso30:i:CC_Cell
--
--
--
csml-variable:Double
m7
0
infinite
0
--
LPS:TLR4:Tollip:Mal:MyD88:IRAK1{p}:TRAF6
--
e70
cso30:c:Complex
cso30:i:CC_PlasmaMembrane_IntegralToPlasmaMembrane_
--
csml-variable:Double
m70
0
infinite
0
--
TAB2:TAB3:TAK1
--
e71
cso30:c:Complex
cso30:i:CC_Cytosol
--
csml-variable:Double
m71
0
infinite
0
--
LPS:TLR4:Tollip:Mal:MyD88:IRAK1{p}:TRAF6:TAB2:TAB3:TAK1
--
e72
cso30:c:Complex
cso30:i:CC_PlasmaMembrane_IntegralToPlasmaMembrane_
--
csml-variable:Double
m72
0
infinite
0
--
DDX58:dsRNA
--
e74
cso30:c:Complex
cso30:i:CC_Cytosol
--
csml-variable:Double
m74
0
infinite
0
--
IFIH1:dsRNA
--
e75
cso30:c:Complex
cso30:i:CC_Cytosol
--
csml-variable:Double
m75
0
infinite
0
--
DDX58{ub}:dsRNA
--
e76
cso30:c:Complex
cso30:i:CC_Cytosol
--
csml-variable:Double
m76
0
infinite
0
--
IFIH1{ub}:dsRNA
--
e77
cso30:c:Complex
cso30:i:CC_Cytosol
--
csml-variable:Double
m77
0
infinite
0
--
DDX58{ub}:dsRNA:MAVS
--
e78
cso30:c:Complex
cso30:i:CC_Cytosol
--
csml-variable:Double
m78
0
infinite
0
--
IFIH1{ub}:dsRNA:MAVS
--
e79
cso30:c:Complex
cso30:i:CC_Cytosol
--
csml-variable:Double
m79
0
infinite
0
--
--
e8
cso30:c:EntityBiologicalCompartment
cso30:i:CC_Cell_WithoutCellWall_
--
--
--
csml-variable:Double
m8
0
infinite
0
--
csml-variable:Double
m80
0
infinite
0
--
csml-variable:Double
m82
0
infinite
0
--
TRAF3{active}
--
e83
cso30:c:Protein
cso30:i:CC_CellComponent
--
csml-variable:Double
m83
10
infinite
0
InterPro | IPR001841 |
TRANSPATH | MO000016963 |
--
NAP1:TBK1:IKK-i{active}
--
e84
cso30:c:Complex
cso30:i:CC_Cytosol
--
csml-variable:Double
m84
0
infinite
0
--
TANK:TBK1:IKK-i{active}
--
e85
cso30:c:Complex
cso30:i:CC_Cytosol
--
csml-variable:Double
m85
0
infinite
0
--
TBK1:IKK-i:SINTBAD{active}
--
e86
cso30:c:Complex
cso30:i:CC_Cytosol
--
csml-variable:Double
m86
0
infinite
0
--
TRAF6{active}
--
e88
cso30:c:Protein
cso30:i:CC_CellComponent
--
csml-variable:Double
m88
10
infinite
0
InterPro | IPR001841 |
TRANSPATH | MO000000212 |
--
IKK-i
--
e89
cso30:c:mRNA
cso30:i:CC_Cytosol
--
--
csml-variable:Double
m90
0
infinite
0
--
--
e9
cso30:c:EntityBiologicalCompartment
cso30:i:CC_Cytoplasm
--
--
--
csml-variable:Double
m9
0
infinite
0
--
DNA:DAI:TBK1
--
e90
cso30:c:Complex
cso30:i:CC_Cytosol
--
csml-variable:Double
m91
0
infinite
0
--
p65:p50(NF-KappaB){active}
--
e94
cso30:c:Complex
cso30:i:CC_Cytosol
--
csml-variable:Double
m89
0
infinite
0
--
RIP1{ub}
--
e95
cso30:c:Protein
cso30:i:CC_Cytosol
--
csml-variable:Double
m95
0
infinite
0
--
A20:NAP1:TBK1:IKK-i
--
e96
cso30:c:Complex
cso30:i:CC_Extracellular
--
csml-variable:Double
m96
0
infinite
0
--
LT-beta:LT-betaR
--
e98
cso30:c:Complex
cso30:i:CC_Cytosol
--
csml-variable:Double
m98
0
infinite
0
--
--
and
mass
coefficient1:0.1
coefficient2:1.0
stoichiometry:c1 : 1
stoichiometry:c2 : 1
stoichiometry:c3 : 1
m155666*m3961*0.1
nodelay
--
0
PMID: 18353649,16822173 These include lipopolysaccharide (LPS), a component of the outer membrane of Gram-negative bacteria, and double-stranded (ds) RNA, a product of many replicating viruses, which trigger the TLR4- or the TLR3-dependent signaling cascade, respectively
p10
p10
cso30:i:ME_Binding
cso30:i:CC_Cytosol
--
--
and
mass
coefficient1:0.1
coefficient2:1.0
stoichiometry:c30 : 1
stoichiometry:c275 : 1
stoichiometry:c31 : 1
m3902*m36417*0.1
nodelay
--
0
PMID: 18353649,14560022 NAP1, a candidate scaffold protein that was initially identified as a TBK1-interacting protein, shares several structural features with TANK PMID: 18353649,15611223,17142768 Similarly to TANK, NAP1 constitutively binds to TBK1 and is also required for IRF3 phosphorylation through both the TLR3- and the RIG-I-dependent pathways
p11
p11
cso30:i:ME_Binding
cso30:i:CC_Cytosol
--
--
and
mass
coefficient1:0.1
coefficient2:1.0
stoichiometry:c32 : 1
stoichiometry:c33 : 1
stoichiometry:c34 : 1
stoichiometry:c35 : 1
m23*m1599*m3902*0.1
nodelay
--
0
PMID: 18353649,17568778 SINTBAD is the most recently identified scaffold protein that constitutively binds to TBK1 and IKK-epsilon
p12
p12
cso30:i:ME_Binding
cso30:i:CC_Cytosol
--
--
and
mass
coefficient1:0.1
coefficient2:1.0
stoichiometry:c37 : 1
stoichiometry:c38 : 1
stoichiometry:c276 : 1
stoichiometry:c139 : 1
stoichiometry:c39 : 1
m3902*m1599*m15*m36417*0.1
nodelay
--
0
PMID: 18353649 The IRF3-activating pathway also involves TRAF3; this connects TRIF to the TBK1?IKK-epsilon heterodimer kinase complex, which is assembled by the scaffold protein NAP1
p13
p13
cso30:i:ME_Binding
cso30:i:CC_Cytosol
--
--
and
mass
coefficient1:0.1
coefficient2:1.0
stoichiometry:c40 : 1
stoichiometry:c41 : 1
stoichiometry:c42 : 1
m3897*m980*0.1
nodelay
--
0
PMID: 18353649 Of note, however, IRF7 was also identified as a TANK-interacting protein through yeast two-hybrid analyses, and IRF7 can be phosphorylated by TANK-containing immune complexes in macrophages treated with unmethylated CpG DNA motifs, which are TLR9 ligands
p14
p14
cso30:i:ME_Binding
cso30:i:CC_Cytosol
--
--
and
mass
coefficient1:0.1
coefficient2:1.0
stoichiometry:c43 : 1
stoichiometry:c44 : 1
stoichiometry:c45 : 1
m1593*m3897*0.1
nodelay
--
0
PMID: 18353649,17468758 This hypothesis is supported by the physical association between TANK and NEMO
--
and
mass
coefficient1:0.1
coefficient2:1.0
stoichiometry:c46 : 1
stoichiometry:c47 : 1
stoichiometry:c48 : 1
m14*m1872*0.1
nodelay
--
0
PMID: 18353649,16621716,16582590,16306937,16306936 TRAF3, which connects TRIF to the TBK1 and IKK-var epsilon kinase complexes for subsequent IRF3 phosphorylation, lies downstream of TRIF
--
and
mass
coefficient1:0.1
coefficient2:1.0
stoichiometry:c49 : 1
stoichiometry:c104 : 1
stoichiometry:c105 : 1
m25*m28*0.1
nodelay
--
0
PMID: 18353649 The IRF3-activating pathway also involves TRAF3; this connects TRIF to the TBK1?IKK-epsilon heterodimer kinase complex, which is assembled by the scaffold protein NAP1
p17
p17
cso30:i:ME_Phosphorylation
cso30:i:CC_Cytosol
--
--
and
mass
coefficient1:0.1
coefficient2:1.0
stoichiometry:c52 : 1
stoichiometry:c53 : 1
stoichiometry:c54 : 1
m29*m977*0.1
nodelay
--
0
PMID: 18353649 IRF3 is phosphorylated (P) within its C-terminal domain by TBK1?IKK-epsilon and forms a homodimer which translocates to the nucleus, binds to ISREs and induces the expression of IFN-dependent genes.
--
and
mass
coefficient1:0.1
coefficient2:1.0
stoichiometry:c57 : 1
stoichiometry:c58 : 1
m31*0.1
nodelay
--
0
PMID: 18353649 IRF3 is phosphorylated (P) within its C-terminal domain by TBK1?IKK-epsilon and forms a homodimer which translocates to the nucleus, binds to ISREs and induces the expression of IFN-dependent genes.
--
and
mass
coefficient1:0.1
coefficient2:1.0
stoichiometry:c55 : 1
stoichiometry:c238 : 1
stoichiometry:c56 : 1
m30*0.1
nodelay
--
0
PMID: 18353649 IRF3 is phosphorylated (P) within its C-terminal domain by TBK1?IKK-epsilon and forms a homodimer which translocates to the nucleus, binds to ISREs and induces the expression of IFN-dependent genes. PMID: 18353649,15258597,15661910 For example, the TNF-alpha-inducible A20 protein negatively regulates both NF-¦ÊB and IRF3-activating pathways by promoting the K48-linked, degradative polyubiquitylation of the receptor-interacting protein (RIP1) in TNF-alpha-stimulated cells or by preventing IRF3 dimerization through direct binding to TBK1 and IKK-var epsilon in dsRNA-stimulated or Newcastle virus-infected cells, respectively
p2
p2
cso30:i:ME_Binding
cso30:i:CC_Cytosol
--
--
and
mass
coefficient1:0.1
coefficient2:1.0
stoichiometry:c4 : 1
stoichiometry:c5 : 1
stoichiometry:c6 : 1
m119368*m3965*0.1
nodelay
--
0
PMID: 18353649,16822173 These include lipopolysaccharide (LPS), a component of the outer membrane of Gram-negative bacteria, and double-stranded (ds) RNA, a product of many replicating viruses, which trigger the TLR4- or the TLR3-dependent signaling cascade, respectively
--
and
mass
coefficient1:0.1
coefficient2:1.0
stoichiometry:c59 : 1
stoichiometry:c60 : 1
stoichiometry:c61 : 1
m32*m33*0.1
nodelay
--
0
PMID: 18353649 IRF3 is phosphorylated (P) within its C-terminal domain by TBK1?IKK-epsilon and forms a homodimer which translocates to the nucleus, binds to ISREs and induces the expression of IFN-dependent genes.
--
and
mass
coefficient1:0.1
coefficient2:1.0
stoichiometry:c62 : 1
stoichiometry:c63 : 1
m34*0.1
nodelay
--
0
PMID: 18353649 IRF3 is phosphorylated (P) within its C-terminal domain by TBK1?IKK-epsilon and forms a homodimer which translocates to the nucleus, binds to ISREs and induces the expression of IFN-dependent genes.
--
and
mass
coefficient1:0.1
coefficient2:1.0
stoichiometry:c64 : 1
stoichiometry:c29 : 1
stoichiometry:c103 : 1
m28*m21*0.1
nodelay
--
0
PMID: 18353649 RIP1 and TRAF6 are recruited to TRIF, and the signal-induced polyubiquitylated RIP1 is subsequently recruited to the TAB2?TAK1 signaling complex, a crucial step for IKK activation
--
and
mass
coefficient1:0.1
coefficient2:1.0
stoichiometry:c50 : 1
stoichiometry:c51 : 1
stoichiometry:c66 : 1
m183*m65*0.1
nodelay
--
0
PMID: 18353649 RIP1 and TRAF6 are recruited to TRIF, and the signal-induced polyubiquitylated RIP1 is subsequently recruited to the TAB2?TAK1 signaling complex, a crucial step for IKK activation
--
and
mass
coefficient1:0.1
coefficient2:1.0
stoichiometry:c67 : 1
stoichiometry:c68 : 1
m37*0.1
nodelay
--
0
PMID: 18353649 RIP1 and TRAF6 are recruited to TRIF, and the signal-induced polyubiquitylated RIP1 is subsequently recruited to the TAB2?TAK1 signaling complex, a crucial step for IKK activation
p25
p25
cso30:i:ME_Binding
cso30:i:CC_Cytosol
--
--
and
mass
coefficient1:0.1
coefficient2:1.0
stoichiometry:c69 : 1
stoichiometry:c70 : 1
stoichiometry:c71 : 1
m6433*m1573*0.1
nodelay
--
0
PMID: 18353649 RIP1 and TRAF6 are recruited to TRIF, and the signal-induced polyubiquitylated RIP1 is subsequently recruited to the TAB2?TAK1 signaling complex, a crucial step for IKK activation
--
and
mass
coefficient1:0.1
coefficient2:1.0
stoichiometry:c72 : 1
stoichiometry:c73 : 1
stoichiometry:c74 : 1
m39*m38*0.1
nodelay
--
0
PMID: 18353649 RIP1 and TRAF6 are recruited to TRIF, and the signal-induced polyubiquitylated RIP1 is subsequently recruited to the TAB2?TAK1 signaling complex, a crucial step for IKK activation
p27
p27
cso30:i:ME_Binding
cso30:i:CC_Cytosol
--
--
and
mass
coefficient1:0.1
coefficient2:1.0
stoichiometry:c75 : 1
stoichiometry:c76 : 1
stoichiometry:c77 : 1
stoichiometry:c78 : 1
m181*m182*m1593*0.1
nodelay
--
0
PMID: 18353649 The IKK complex is assembled by NEMO and targets I¦ÊB alpha for phosphorylation and subsequent degradative polyubiquitylation.
p28
p28
cso30:i:ME_UnknownActivation
cso30:i:CC_Cytosol
--
--
and
mass
coefficient1:0.1
coefficient2:1.0
stoichiometry:c79 : 1
stoichiometry:c80 : 1
stoichiometry:c81 : 1
m40*m207*0.1
nodelay
--
0
PMID: 18353649 RIP1 and TRAF6 are recruited to TRIF, and the signal-induced polyubiquitylated RIP1 is subsequently recruited to the TAB2?TAK1 signaling complex, a crucial step for IKK activation PMID: 18353649 The IKK complex is assembled by NEMO and targets I¦ÊB alpha for phosphorylation and subsequent degradative polyubiquitylation.
p29
p29
cso30:i:ME_Binding
cso30:i:CC_Cytosol
--
--
and
mass
coefficient1:0.1
coefficient2:1.0
stoichiometry:c82 : 1
stoichiometry:c156 : 1
stoichiometry:c84 : 1
m55295*m172*0.1
nodelay
--
0
PMID: 18353649 The p50?p65 heterodimer is then released from I¦ÊB alpha, moves into the nucleus and induces the expression of various proinflammatory genes through binding to ¦ÊB sites
--
and
mass
coefficient1:0.1
coefficient2:1.0
stoichiometry:c7 : 1
stoichiometry:c8 : 1
stoichiometry:c9 : 1
m5*m18998*0.1
nodelay
--
0
PMID: 18353649,12471095,12539043 Both pathways requires Toll?IL-1 receptor (TIR) domain-containing adaptor inducing IFN-¦Â (TRIF) [also called TIR-containing adapter molecule-1 (TICAM-1)] and one of the five TIR-domain-containing adaptors identified so far
--
and
mass
coefficient1:0.1
coefficient2:1.0
stoichiometry:c85 : 1
stoichiometry:c86 : 1
stoichiometry:c87 : 1
m43*m199*0.1
nodelay
--
0
PMID: 18353649 The p50?p65 heterodimer is then released from I¦ÊB alpha, moves into the nucleus and induces the expression of various proinflammatory genes through binding to ¦ÊB sites
--
and
mass
coefficient1:0.1
coefficient2:1.0
stoichiometry:c88 : 1
stoichiometry:c89 : 1
stoichiometry:c90 : 1
m41*m45*0.1
nodelay
--
0
PMID: 18353649 The IKK complex is assembled by NEMO and targets I¦ÊB alpha for phosphorylation and subsequent degradative polyubiquitylation. PMID: 18353649 TNF-alpha triggers NF-¦ÊB activation through TRADD and the classical, NEMO-dependent pathway, which involves IKK-¦Â-mediated I¦ÊBgreek small letter alpha phosphorylation and subsequent degradation.
--
and
mass
coefficient1:0.1
coefficient2:1.0
stoichiometry:c91 : 1
stoichiometry:c92 : 1
m46*0.1
nodelay
--
0
PMID: 18353649 The IKK complex is assembled by NEMO and targets I¦ÊB alpha for phosphorylation and subsequent degradative polyubiquitylation. PMID: 18353649 TNF-alpha triggers NF-¦ÊB activation through TRADD and the classical, NEMO-dependent pathway, which involves IKK-¦Â-mediated I¦ÊBgreek small letter alpha phosphorylation and subsequent degradation.
p33
p33
cso30:i:ME_UnknownDegradation
cso30:i:CC_Cytosol
--
--
and
mass
coefficient1:0.1
coefficient2:1.0
stoichiometry:c93 : 1
stoichiometry:c94 : 1
stoichiometry:c218 : 1
stoichiometry:c212 : 1
m47*0.1
nodelay
--
0
PMID: 18353649 The IKK complex is assembled by NEMO and targets I¦ÊB alpha for phosphorylation and subsequent degradative polyubiquitylation. PMID: 18353649 TNF-alpha triggers NF-¦ÊB activation through TRADD and the classical, NEMO-dependent pathway, which involves IKK-¦Â-mediated I¦ÊBgreek small letter alpha phosphorylation and subsequent degradation.
--
and
mass
coefficient1:0.1
coefficient2:1.0
stoichiometry:c201 : 1
stoichiometry:c97 : 1
m89*0.1
nodelay
--
0
PMID: 18353649 The p50?p65 heterodimer is then released from I¦ÊB alpha, moves into the nucleus and induces the expression of various proinflammatory genes through binding to ¦ÊB sites PMID: 18353649 The p50?p65 heterodimer translocates into the nucleus to drive the expression of multiple genes, including TANK, IKK-epsilon and A20.
--
and
mass
coefficient1:0.1
coefficient2:1.0
stoichiometry:c98 : 1
stoichiometry:c99 : 1
m49*0.1
nodelay
--
0
PMID: 18353649 The p50?p65 heterodimer is then released from I¦ÊB alpha, moves into the nucleus and induces the expression of various proinflammatory genes through binding to ¦ÊB sites
--
and
mass
coefficient1:0.1
coefficient2:1.0
stoichiometry:c100 : 1
stoichiometry:c101 : 1
stoichiometry:c102 : 1
m20*m15*0.1
nodelay
--
0
PMID: 18353649,16621716,16582590,16306937,16306936 TRAF3, which connects TRIF to the TBK1 and IKK-var epsilon kinase complexes for subsequent IRF3 phosphorylation, lies downstream of TRIF PMID: 18353649 IRF3 activation also requires TRAF3, which binds to TANK, the scaffold protein that assembles the TBK1?IKK-epsilon heterodimer
p17
p37
cso30:i:ME_Phosphorylation
cso30:i:CC_Cytosol
--
--
and
mass
coefficient1:0.1
coefficient2:1.0
stoichiometry:c106 : 1
stoichiometry:c107 : 1
stoichiometry:c108 : 1
m64*m977*0.1
nodelay
--
0
PMID: 18353649 IRF3 is phosphorylated (P) within its C-terminal domain by TBK1?IKK-epsilon and forms a homodimer which translocates to the nucleus, binds to ISREs and induces the expression of IFN-dependent genes.
--
and
mass
coefficient1:0.1
coefficient2:1.0
stoichiometry:c109 : 1
stoichiometry:c110 : 1
stoichiometry:c111 : 1
m3973*m5*0.1
nodelay
--
0
PMID: 18353649 LPS and IKK-mediated NF-¦ÊB activation occurs through the recruitment of Tollip, Mal and Myd88 followed by the binding of the kinase IRAK1 to TLR4
--
and
mass
coefficient1:0.1
coefficient2:1.0
stoichiometry:c112 : 1
stoichiometry:c113 : 1
stoichiometry:c114 : 1
m66*m43675*0.1
nodelay
--
0
PMID: 18353649 LPS and IKK-mediated NF-¦ÊB activation occurs through the recruitment of Tollip, Mal and Myd88 followed by the binding of the kinase IRAK1 to TLR4
--
and
mass
coefficient1:0.1
coefficient2:1.0
stoichiometry:c10 : 1
stoichiometry:c11 : 1
stoichiometry:c12 : 1
m19314*m18998*0.1
nodelay
--
0
PMID: 18353649,12471095,12539043 Both pathways requires Toll?IL-1 receptor (TIR) domain-containing adaptor inducing IFN-¦Â (TRIF) [also called TIR-containing adapter molecule-1 (TICAM-1)] and one of the five TIR-domain-containing adaptors identified so far
--
and
mass
coefficient1:0.1
coefficient2:1.0
stoichiometry:c115 : 1
stoichiometry:c116 : 1
stoichiometry:c117 : 1
m67*m1572*0.1
nodelay
--
0
PMID: 18353649 LPS and IKK-mediated NF-¦ÊB activation occurs through the recruitment of Tollip, Mal and Myd88 followed by the binding of the kinase IRAK1 to TLR4
--
and
mass
coefficient1:0.1
coefficient2:1.0
stoichiometry:c118 : 1
stoichiometry:c119 : 1
stoichiometry:c120 : 1
m68*m184*0.1
nodelay
--
0
PMID: 18353649 LPS and IKK-mediated NF-¦ÊB activation occurs through the recruitment of Tollip, Mal and Myd88 followed by the binding of the kinase IRAK1 to TLR4
p42
p42
cso30:i:ME_Phosphorylation
cso30:i:CC_Cytosol
--
--
and
mass
coefficient1:0.1
coefficient2:1.0
stoichiometry:c122 : 1
stoichiometry:c278 : 1
stoichiometry:c121 : 1
m17258*m42*0.1
nodelay
--
0
PMID: 18353649 IRAK1 is subsequently phosphorylated by IRAK4
--
and
mass
coefficient1:0.1
coefficient2:1.0
stoichiometry:c123 : 1
stoichiometry:c124 : 1
stoichiometry:c125 : 1
m69*m183*0.1
nodelay
--
0
PMID: 18353649 This event triggers the recruitment of TRAF6 to the receptor complex and subsequent signal-induced association of these proteins with the TAB2?TAB3?TAK1 complex, a step required for IKK activation
--
and
mass
coefficient1:0.1
coefficient2:1.0
stoichiometry:c129 : 1
stoichiometry:c131 : 1
stoichiometry:c132 : 1
m70*m71*0.1
nodelay
--
0
PMID: 18353649 This event triggers the recruitment of TRAF6 to the receptor complex and subsequent signal-induced association of these proteins with the TAB2?TAB3?TAK1 complex, a step required for IKK activation
p43
p45
cso30:i:ME_Binding
cso30:i:CC_Cytosol
--
--
and
mass
coefficient1:0.1
coefficient2:1.0
stoichiometry:c126 : 1
stoichiometry:c127 : 1
stoichiometry:c128 : 1
stoichiometry:c130 : 1
m1573*m6433*m19389*0.1
nodelay
--
0
PMID: 18353649 This event triggers the recruitment of TRAF6 to the receptor complex and subsequent signal-induced association of these proteins with the TAB2?TAB3?TAK1 complex, a step required for IKK activation
p46
p46
cso30:i:ME_UnknownActivation
cso30:i:CC_Cytosol
--
--
and
mass
coefficient1:0.1
coefficient2:1.0
stoichiometry:c133 : 1
stoichiometry:c134 : 1
stoichiometry:c135 : 1
m72*m207*0.1
nodelay
--
0
PMID: 18353649 This event triggers the recruitment of TRAF6 to the receptor complex and subsequent signal-induced association of these proteins with the TAB2?TAB3?TAK1 complex, a step required for IKK activation
p47
p47
cso30:i:ME_Binding
cso30:i:CC_Cytosol
--
--
and
mass
coefficient1:0.1
coefficient2:1.0
stoichiometry:c137 : 1
stoichiometry:c279 : 1
stoichiometry:c138 : 1
m41844*m119368*0.1
nodelay
--
0
PMID: 18353649,16039576 Both proteins harbor a DEx(D/H) box RNA helicase domain that is required to sense dsRNA synthesized from replicating virus entering the cytoplasm (e.g. the Sendai virus, the Newcastle disease virus or the vesicular stomatitis virus PMID: 18353649 RNA from viruses triggers the activation of the cytosolic receptors RIG-I and MDA-5 through binding to their DExD/H box RNA helicase
p47
p48
cso30:i:ME_Binding
cso30:i:CC_Cytosol
--
--
and
mass
coefficient1:0.1
coefficient2:1.0
stoichiometry:c140 : 1
stoichiometry:c280 : 1
stoichiometry:c141 : 1
m76904*m119368*0.1
nodelay
--
0
PMID: 18353649,16039576 Both proteins harbor a DEx(D/H) box RNA helicase domain that is required to sense dsRNA synthesized from replicating virus entering the cytoplasm (e.g. the Sendai virus, the Newcastle disease virus or the vesicular stomatitis virus PMID: 18353649 RNA from viruses triggers the activation of the cytosolic receptors RIG-I and MDA-5 through binding to their DExD/H box RNA helicase
p49
p49
cso30:i:ME_Ubiquitination
cso30:i:CC_Cytosol
--
--
and
mass
coefficient1:0.1
coefficient2:1.0
stoichiometry:c142 : 1
stoichiometry:c144 : 1
stoichiometry:c143 : 1
m74*m63891*0.1
nodelay
--
0
PMID: 18353649 The CARD domains of these receptors subsequently undergo K63-linked polyubiquitylation by the E3 ubiquitin ligase TRIM25, which might facilitate the interaction of RIG-I with the mitochondrial adaptor MAVS.
--
and
mass
coefficient1:0.1
coefficient2:1.0
stoichiometry:c14 : 1
stoichiometry:c13 : 1
stoichiometry:c15 : 1
m13*m1872*0.1
nodelay
--
0
PMID: 18353649,16621716,16582590,16306937,16306936 TRAF3, which connects TRIF to the TBK1 and IKK-var epsilon kinase complexes for subsequent IRF3 phosphorylation, lies downstream of TRIF
p49
p50
cso30:i:ME_Ubiquitination
cso30:i:CC_Cytosol
--
--
and
mass
coefficient1:0.1
coefficient2:1.0
stoichiometry:c145 : 1
stoichiometry:c147 : 1
stoichiometry:c146 : 1
m75*m63891*0.1
nodelay
--
0
PMID: 18353649 The CARD domains of these receptors subsequently undergo K63-linked polyubiquitylation by the E3 ubiquitin ligase TRIM25, which might facilitate the interaction of RIG-I with the mitochondrial adaptor MAVS.
--
and
mass
coefficient1:0.1
coefficient2:1.0
stoichiometry:c148 : 1
stoichiometry:c149 : 1
stoichiometry:c152 : 1
m76*m68199*0.1
nodelay
--
0
PMID: 18353649 The CARD domains of these receptors subsequently undergo K63-linked polyubiquitylation by the E3 ubiquitin ligase TRIM25, which might facilitate the interaction of RIG-I with the mitochondrial adaptor MAVS. PMID: 18353649,16125763 Because they also harbor two caspase-recruitment domain (CARD)-like domains, they can transmit the signal through direct binding to mitochondrial antiviral signaling (MAVS)
--
and
mass
coefficient1:0.1
coefficient2:1.0
stoichiometry:c150 : 1
stoichiometry:c151 : 1
stoichiometry:c153 : 1
m68199*m77*0.1
nodelay
--
0
PMID: 18353649 The CARD domains of these receptors subsequently undergo K63-linked polyubiquitylation by the E3 ubiquitin ligase TRIM25, which might facilitate the interaction of RIG-I with the mitochondrial adaptor MAVS. PMID: 18353649,16125763 Because they also harbor two caspase-recruitment domain (CARD)-like domains, they can transmit the signal through direct binding to mitochondrial antiviral signaling (MAVS)
p53
p53
cso30:i:ME_UnknownActivation
cso30:i:CC_Cytosol
--
--
and
mass
coefficient1:0.1
coefficient2:1.0
stoichiometry:c154 : 1
stoichiometry:c155 : 1
stoichiometry:c159 : 1
m78*m1872*0.1
nodelay
--
0
PMID: 18353649 MAVS signals to TRAF3, which triggers IRF3 phosphorylation through TBK1 and IKK-epsilon-mediated activations.
--
and
mass
coefficient1:0.1
coefficient2:1.0
stoichiometry:c157 : 1
stoichiometry:c65 : 1
stoichiometry:c158 : 1
m80*m1055*0.1
nodelay
--
0
PMID: 18353649 Indeed, the intracellular DNA sensor is DNA-dependent activator of IFN-regulatory factors (DAI), which binds to, and is activated by, DNA from various sources
--
and
mass
coefficient1:0.1
coefficient2:1.0
stoichiometry:c163 : 1
stoichiometry:c164 : 1
stoichiometry:c165 : 1
m83*m25*0.1
nodelay
--
0
PMID: 18353649 MAVS signals to TRAF3, which triggers IRF3 phosphorylation through TBK1 and IKK-epsilon-mediated activations.
p53
p56
cso30:i:ME_UnknownActivation
cso30:i:CC_Cytosol
--
--
and
mass
coefficient1:0.1
coefficient2:1.0
stoichiometry:c160 : 1
stoichiometry:c161 : 1
stoichiometry:c162 : 1
m79*m1872*0.1
nodelay
--
0
PMID: 18353649 MAVS signals to TRAF3, which triggers IRF3 phosphorylation through TBK1 and IKK-epsilon-mediated activations.
--
and
mass
coefficient1:0.1
coefficient2:1.0
stoichiometry:c166 : 1
stoichiometry:c167 : 1
stoichiometry:c168 : 1
m83*m20*0.1
nodelay
--
0
PMID: 18353649 MAVS signals to TRAF3, which triggers IRF3 phosphorylation through TBK1 and IKK-epsilon-mediated activations.
--
and
mass
coefficient1:0.1
coefficient2:1.0
stoichiometry:c169 : 1
stoichiometry:c170 : 1
stoichiometry:c171 : 1
m83*m24*0.1
nodelay
--
0
PMID: 18353649 MAVS signals to TRAF3, which triggers IRF3 phosphorylation through TBK1 and IKK-epsilon-mediated activations.
p59
p59
cso30:i:ME_Phosphorylation
cso30:i:CC_Cytosol
--
--
and
mass
coefficient1:0.1
coefficient2:1.0
stoichiometry:c172 : 1
stoichiometry:c173 : 1
stoichiometry:c174 : 1
m86*m977*0.1
nodelay
--
0
PMID: 18353649 MAVS signals to TRAF3, which triggers IRF3 phosphorylation through TBK1 and IKK-epsilon-mediated activations.
--
and
mass
coefficient1:0.1
coefficient2:1.0
stoichiometry:c16 : 1
stoichiometry:c17 : 1
stoichiometry:c20 : 1
m16*m19828*0.1
nodelay
--
0
PMID: 18353649, 16424890 The TLR7, TLR8 and TLR9 receptors, which, in contrast to TLR4, are not localized on the cell surface but rather in endosomal compartments, sense viral nucleic acids in plasmacytoid dendritic cells and also elicit IFN gene induction through IRF7 phosphorylation
p59
p60
cso30:i:ME_Phosphorylation
cso30:i:CC_Cytosol
--
--
and
mass
coefficient1:0.1
coefficient2:1.0
stoichiometry:c175 : 1
stoichiometry:c176 : 1
stoichiometry:c177 : 1
m84*m977*0.1
nodelay
--
0
PMID: 18353649 MAVS signals to TRAF3, which triggers IRF3 phosphorylation through TBK1 and IKK-epsilon-mediated activations.
p59
p61
cso30:i:ME_Phosphorylation
cso30:i:CC_Cytosol
--
--
and
mass
coefficient1:0.1
coefficient2:1.0
stoichiometry:c178 : 1
stoichiometry:c179 : 1
stoichiometry:c180 : 1
m85*m977*0.1
nodelay
--
0
PMID: 18353649 MAVS signals to TRAF3, which triggers IRF3 phosphorylation through TBK1 and IKK-epsilon-mediated activations.
p63
p63
cso30:i:ME_Phosphorylation
cso30:i:CC_Cytosol
--
--
and
mass
coefficient1:0.1
coefficient2:1.0
stoichiometry:c182 : 1
stoichiometry:c184 : 1
stoichiometry:c183 : 1
m980*m84*0.1
nodelay
--
0
PMID: 18353649,16153868,16125763 This protein subsequently triggers NF-¦ÊB activation through TRAF6 and the IKK-alpha?beta complex or IRF3 and IRF7 activation through TRAF3 and the TBK1 and IKK-epsilon kinase complexes
p63
p64
cso30:i:ME_Phosphorylation
cso30:i:CC_Cytosol
--
--
and
mass
coefficient1:0.1
coefficient2:1.0
stoichiometry:c185 : 1
stoichiometry:c181 : 1
stoichiometry:c186 : 1
m980*m85*0.1
nodelay
--
0
PMID: 18353649,16153868,16125763 This protein subsequently triggers NF-¦ÊB activation through TRAF6 and the IKK-alpha?beta complex or IRF3 and IRF7 activation through TRAF3 and the TBK1 and IKK-epsilon kinase complexes
p63
p65
cso30:i:ME_Phosphorylation
cso30:i:CC_Cytosol
--
--
and
mass
coefficient1:0.1
coefficient2:1.0
stoichiometry:c188 : 1
stoichiometry:c187 : 1
stoichiometry:c189 : 1
m980*m86*0.1
nodelay
--
0
PMID: 18353649,16153868,16125763 This protein subsequently triggers NF-¦ÊB activation through TRAF6 and the IKK-alpha?beta complex or IRF3 and IRF7 activation through TRAF3 and the TBK1 and IKK-epsilon kinase complexes
p66
p66
cso30:i:ME_UnknownActivation
cso30:i:CC_Nucleoplasm
--
--
and
mass
coefficient1:0.1
coefficient2:1.0
stoichiometry:c190 : 1
stoichiometry:c191 : 1
stoichiometry:c192 : 1
m79*m183*0.1
nodelay
--
0
PMID: 18353649 Of note, MAVS can also signal to TRAF6 for the IKK-alpha?IKK-beta-complex-mediated NF-¦ÊB activation PMID: 18353649,16153868,16125763 This protein subsequently triggers NF-¦ÊB activation through TRAF6 and the IKK-alpha?beta complex or IRF3 and IRF7 activation through TRAF3 and the TBK1 and IKK-epsilon kinase complexes
p66
p67
cso30:i:ME_UnknownActivation
cso30:i:CC_Nucleoplasm
--
--
and
mass
coefficient1:0.1
coefficient2:1.0
stoichiometry:c193 : 1
stoichiometry:c194 : 1
stoichiometry:c195 : 1
m78*m183*0.1
nodelay
--
0
PMID: 18353649 Of note, MAVS can also signal to TRAF6 for the IKK-alpha?IKK-beta-complex-mediated NF-¦ÊB activation PMID: 18353649,16153868,16125763 This protein subsequently triggers NF-¦ÊB activation through TRAF6 and the IKK-alpha?beta complex or IRF3 and IRF7 activation through TRAF3 and the TBK1 and IKK-epsilon kinase complexes
p66
p68
cso30:i:ME_UnknownActivation
cso30:i:CC_Nucleoplasm
--
--
and
mass
coefficient1:0.1
coefficient2:1.0
stoichiometry:c196 : 1
stoichiometry:c197 : 1
stoichiometry:c198 : 1
m88*m207*0.1
nodelay
--
0
PMID: 18353649 Of note, MAVS can also signal to TRAF6 for the IKK-alpha?IKK-beta-complex-mediated NF-¦ÊB activation PMID: 18353649,16153868,16125763 This protein subsequently triggers NF-¦ÊB activation through TRAF6 and the IKK-alpha?beta complex or IRF3 and IRF7 activation through TRAF3 and the TBK1 and IKK-epsilon kinase complexes
--
and
mass
coefficient1:0.1
coefficient2:1.0
stoichiometry:c199 : 1
stoichiometry:c221 : 1
stoichiometry:c200 : 1
m41*m45*0.1
nodelay
--
0
PMID: 18353649 Of note, MAVS can also signal to TRAF6 for the IKK-alpha?IKK-beta-complex-mediated NF-¦ÊB activation PMID: 18353649,16153868,16125763 This protein subsequently triggers NF-¦ÊB activation through TRAF6 and the IKK-alpha?beta complex or IRF3 and IRF7 activation through TRAF3 and the TBK1 and IKK-epsilon kinase complexes
--
and
mass
coefficient1:0.1
coefficient2:1.0
stoichiometry:c18 : 1
stoichiometry:c19 : 1
stoichiometry:c21 : 1
m16*m19823*0.1
nodelay
--
0
PMID: 18353649, 16424890 The TLR7, TLR8 and TLR9 receptors, which, in contrast to TLR4, are not localized on the cell surface but rather in endosomal compartments, sense viral nucleic acids in plasmacytoid dendritic cells and also elicit IFN gene induction through IRF7 phosphorylation
--
and
mass
coefficient1:0.1
coefficient2:1.0
stoichiometry:c202 : 1
stoichiometry:c203 : 1
stoichiometry:c204 : 1
m82*m3902*0.1
nodelay
--
0
PMID: 18353649,17618271 DAI subsequently recruits TBK1, which triggers IRF3 phosphorylation and type I IFN gene expression
p71
p71
cso30:i:ME_Phosphorylation
cso30:i:CC_Cytosol
--
--
and
mass
coefficient1:0.1
coefficient2:1.0
stoichiometry:c205 : 1
stoichiometry:c206 : 1
stoichiometry:c207 : 1
m91*m977*0.1
nodelay
--
0
PMID: 18353649,17618271 DAI subsequently recruits TBK1, which triggers IRF3 phosphorylation and type I IFN gene expression
--
and
mass
coefficient1:0.1
coefficient2:1.0
stoichiometry:c208 : 1
stoichiometry:c209 : 1
m30*0.1
nodelay
--
0
PMID: 18353649,17618271 DAI subsequently recruits TBK1, which triggers IRF3 phosphorylation and type I IFN gene expression
p73
p73
cso30:i:ME_Binding
cso30:i:CC_Cytosol
--
--
and
mass
coefficient1:0.1
coefficient2:1.0
stoichiometry:c211 : 1
stoichiometry:c83 : 1
stoichiometry:c210 : 1
m230*m177*0.1
nodelay
--
0
PMID: 18353649,17003035 Additional evidence for crosstalk between the two signaling pathways is provided by IKK-var epsilon-mediated phosphorylation of p65 in TNF-alpha-stimulated cells
p74
p74
cso30:i:ME_Phosphorylation
cso30:i:CC_Cytosol
--
--
and
mass
coefficient1:0.1
coefficient2:1.0
stoichiometry:c213 : 1
stoichiometry:c136 : 1
stoichiometry:c231 : 1
stoichiometry:c215 : 1
m55295*m1599*m16874*0.1
nodelay
--
0
PMID: 18353649,17003035 Additional evidence for crosstalk between the two signaling pathways is provided by IKK-var epsilon-mediated phosphorylation of p65 in TNF-alpha-stimulated cells
p75
p75
cso30:i:ME_UnknownActivation
cso30:i:CC_Cytosol
--
--
and
mass
coefficient1:0.1
coefficient2:1.0
stoichiometry:c220 : 1
stoichiometry:c217 : 1
stoichiometry:c230 : 1
stoichiometry:c277 : 1
stoichiometry:c216 : 1
m178*m45*m16874*0.1
nodelay
--
0
PMID: 18353649 TNF-alpha triggers NF-¦ÊB activation through TRADD and the classical, NEMO-dependent pathway, which involves IKK-¦Â-mediated I¦ÊBgreek small letter alpha phosphorylation and subsequent degradation. PMID: 18353649 For example, the TNF-alpha-inducible A20 protein negatively regulates both NF-¦ÊB and IRF3-activating pathways by promoting the K48-linked, degradative polyubiquitylation of the receptor-interacting protein (RIP1) in TNF-alpha-stimulated cells
--
and
mass
coefficient1:0.1
coefficient2:1.0
stoichiometry:c96 : 1
stoichiometry:c222 : 1
m49*0.1
nodelay
--
0
PMID: 18353649 The p50?p65 heterodimer translocates into the nucleus to drive the expression of multiple genes, including TANK, IKK-epsilon and A20.
--
and
mass
coefficient1:0.1
coefficient2:1.0
stoichiometry:c223 : 1
stoichiometry:c224 : 1
m49*0.1
nodelay
--
0
PMID: 18353649 The p50?p65 heterodimer translocates into the nucleus to drive the expression of multiple genes, including TANK, IKK-epsilon and A20.
--
and
mass
coefficient1:0.1
coefficient2:1.0
stoichiometry:c225 : 1
stoichiometry:c226 : 1
m49*0.1
nodelay
--
0
PMID: 18353649 The p50?p65 heterodimer translocates into the nucleus to drive the expression of multiple genes, including TANK, IKK-epsilon and A20.
--
and
mass
coefficient1:0.1
coefficient2:1.0
stoichiometry:c227 : 1
stoichiometry:c228 : 1
m93378*0.1
nodelay
--
0
PMID: 18353649 The p50?p65 heterodimer translocates into the nucleus to drive the expression of multiple genes, including TANK, IKK-epsilon and A20.
--
and
mass
coefficient1:0.1
coefficient2:1.0
stoichiometry:c22 : 1
stoichiometry:c23 : 1
stoichiometry:c24 : 1
m16*m19940*0.1
nodelay
--
0
PMID: 18353649, 16424890 The TLR7, TLR8 and TLR9 receptors, which, in contrast to TLR4, are not localized on the cell surface but rather in endosomal compartments, sense viral nucleic acids in plasmacytoid dendritic cells and also elicit IFN gene induction through IRF7 phosphorylation
p80
p80
cso30:i:ME_Ubiquitination
cso30:i:CC_Cytosol
--
--
and
mass
coefficient1:0.1
coefficient2:1.0
stoichiometry:c229 : 1
stoichiometry:c36 : 1
stoichiometry:c232 : 1
m1585*m21*0.1
nodelay
--
0
PMID: 18353649 For example, the TNF-alpha-inducible A20 protein negatively regulates both NF-¦ÊB and IRF3-activating pathways by promoting the K48-linked, degradative polyubiquitylation of the receptor-interacting protein (RIP1) in TNF-alpha-stimulated cells
p81
p81
cso30:i:ME_UnknownDegradation
cso30:i:CC_Cytosol
--
--
and
mass
coefficient1:0.1
coefficient2:1.0
stoichiometry:c233 : 1
stoichiometry:c214 : 1
m95*0.1
nodelay
--
0
PMID: 18353649 For example, the TNF-alpha-inducible A20 protein negatively regulates both NF-¦ÊB and IRF3-activating pathways by promoting the K48-linked, degradative polyubiquitylation of the receptor-interacting protein (RIP1) in TNF-alpha-stimulated cells
--
and
mass
coefficient1:0.1
coefficient2:1.0
stoichiometry:c242 : 1
stoichiometry:c243 : 1
m97*0.1
nodelay
--
0
PMID: 18353649 A second crosstalk is established between IKK-epsilon and p100, an inhibitory molecule whose processing into p52 is triggered following stimulation with lymphotoxin-¦Â PMID: 18353649 p100 is subsequently processed into p52 and moves into the nucleus as a heterodimer with the NF-¦ÊB protein RelB
--
and
mass
coefficient1:0.1
coefficient2:1.0
stoichiometry:c235 : 1
stoichiometry:c236 : 1
stoichiometry:c237 : 1
m1585*m25*0.1
nodelay
--
0
PMID: 18353649,15258597,15661910 For example, the TNF-alpha-inducible A20 protein negatively regulates both NF-¦ÊB and IRF3-activating pathways by promoting the K48-linked, degradative polyubiquitylation of the receptor-interacting protein (RIP1) in TNF-alpha-stimulated cells or by preventing IRF3 dimerization through direct binding to TBK1 and IKK-var epsilon in dsRNA-stimulated or Newcastle virus-infected cells, respectively
p84
p84
cso30:i:ME_Binding
cso30:i:CC_Cytosol
--
--
and
mass
coefficient1:0.1
coefficient2:1.0
stoichiometry:c239 : 1
stoichiometry:c240 : 1
stoichiometry:c241 : 1
m1451*m1886*0.1
nodelay
--
0
PMID: 18353649 A second crosstalk is established between IKK-epsilon and p100, an inhibitory molecule whose processing into p52 is triggered following stimulation with lymphotoxin-¦Â
p85
p85
cso30:i:ME_Binding
cso30:i:CC_Cytosol
--
--
and
mass
coefficient1:0.1
coefficient2:1.0
stoichiometry:c245 : 1
stoichiometry:c246 : 1
stoichiometry:c247 : 1
m1599*m173*m168*0.1
nodelay
--
0
PMID: 18353649 IKK-epsilon expression is also induced in TNF-alpha-stimulated cells, and this kinase associates with p100 and p52 to enhance the transactivation potential of specific p52?p65 heterodimers
p86
p86
cso30:i:ME_Phosphorylation
cso30:i:CC_Cytosol
--
--
and
mass
coefficient1:0.1
coefficient2:1.0
stoichiometry:c248 : 1
stoichiometry:c249 : 1
stoichiometry:c255 : 1
stoichiometry:c250 : 1
m181*m173*m99*0.1
nodelay
--
0
PMID: 18353649 This pathway, which requires TRAF2 and TRAF5 and is negatively regulated by TRAF3, triggers NIK activation and IKK-alpha-mediated p100 phosphorylation
p87
p87
cso30:i:ME_UnknownActivation
cso30:i:CC_Cytosol
--
--
and
mass
coefficient1:0.1
coefficient2:1.0
stoichiometry:c244 : 1
stoichiometry:c251 : 1
stoichiometry:c252 : 1
stoichiometry:c253 : 1
stoichiometry:c256 : 1
stoichiometry:c254 : 1
m98*m1874*m180*m174*0.1
nodelay
--
0
PMID: 18353649 This pathway, which requires TRAF2 and TRAF5 and is negatively regulated by TRAF3, triggers NIK activation and IKK-alpha-mediated p100 phosphorylation.
p88
p88
cso30:i:ME_Binding
cso30:i:CC_Cytosol
--
--
and
mass
coefficient1:0.1
coefficient2:1.0
stoichiometry:c257 : 1
stoichiometry:c258 : 1
stoichiometry:c259 : 1
m168*m167*0.1
nodelay
--
0
PMID: 18353649 p100 is subsequently processed into p52 and moves into the nucleus as a heterodimer with the NF-¦ÊB protein RelB
--
and
mass
coefficient1:0.1
coefficient2:1.0
stoichiometry:c260 : 1
stoichiometry:c261 : 1
m100*0.1
nodelay
--
0
PMID: 18353649 p100 is subsequently processed into p52 and moves into the nucleus as a heterodimer with the NF-¦ÊB protein RelB
p9
p9
cso30:i:ME_Binding
cso30:i:CC_Cytosol
--
--
and
mass
coefficient1:0.1
coefficient2:1.0
stoichiometry:c25 : 1
stoichiometry:c26 : 1
stoichiometry:c27 : 1
stoichiometry:c28 : 1
m3897*m3902*m1599*0.1
nodelay
--
0
PMID: 18353649,10759890 TANK constitutively binds to IKK-epsilon and TBK1 through its N-terminal domain
--
and
mass
coefficient1:0.1
coefficient2:1.0
stoichiometry:c262 : 1
stoichiometry:c263 : 1
stoichiometry:c264 : 1
m20*m207*0.1
nodelay
--
0
PMID: 18353649 TANK also connects IKK-var epsilon and TBK1 to the IKK complex through binding to NEMO for subsequent p65 phosphorylation
p91
p91
cso30:i:ME_Phosphorylation
cso30:i:CC_Cytosol
--
--
and
mass
coefficient1:0.1
coefficient2:1.0
stoichiometry:c266 : 1
stoichiometry:c267 : 1
stoichiometry:c268 : 1
stoichiometry:c265 : 1
m3897*m3902*m5*0.1
nodelay
--
0
PMID: 18353649 TBK1 and IKK-var epsilon phosphorylate TANK in macrophages and also are required for LPS-mediated TANK polyubiquitylation, independently of their kinase activity.
p91
p92
cso30:i:ME_Phosphorylation
cso30:i:CC_Cytosol
--
--
and
mass
coefficient1:0.1
coefficient2:1.0
stoichiometry:c270 : 1
stoichiometry:c271 : 1
stoichiometry:c274 : 1
stoichiometry:c269 : 1
m1599*m5*m3897*0.1
nodelay
--
0
PMID: 18353649 TBK1 and IKK-var epsilon phosphorylate TANK in macrophages and also are required for LPS-mediated TANK polyubiquitylation, independently of their kinase activity.
--
and
mass
coefficient1:0.1
coefficient2:1.0
stoichiometry:c272 : 1
stoichiometry:c273 : 1
m103*0.1
nodelay
--
0
PMID: 18353649 TBK1 and IKK-var epsilon phosphorylate TANK in macrophages and also are required for LPS-mediated TANK polyubiquitylation, independently of their kinase activity.
cso30:c:InputProcess
threshold
--
0
1,
--
cso30:c:InputProcess
threshold
--
0
1,
--
cso30:c:InputProcess
threshold
--
0
1,
--
cso30:c:OutputProcess
threshold
--
0
1,
--
cso30:c:InputProcess
threshold
--
0
1,
--
cso30:c:InputAssociation
threshold
--
0
1,
--
cso30:c:InputProcess
threshold
--
0
1,
--
cso30:c:OutputProcess
threshold
--
0
1,
--
cso30:c:InputProcess
threshold
--
0
1,
--
cso30:c:OutputProcess
threshold
--
0
1,
--
cso30:c:InputProcess
threshold
--
0
1,
--
cso30:c:OutputProcess
threshold
--
0
1,
--
cso30:c:InputProcess
threshold
--
0
1,
--
cso30:c:OutputProcess
threshold
--
0
1,
--
cso30:c:InputProcess
threshold
--
0
1,
--
cso30:c:OutputProcess
threshold
--
0
1,
--
cso30:c:OutputProcess
threshold
--
0
1,
--
cso30:c:OutputProcess
threshold
--
0
1,
--
cso30:c:InputAssociation
threshold
--
0
1,
--
cso30:c:InputProcess
threshold
--
0
1,
--
cso30:c:OutputProcess
threshold
--
0
1,
--
cso30:c:InputProcess
threshold
--
0
1,
--
cso30:c:InputProcess
threshold
--
0
1,
--
cso30:c:InputProcess
threshold
--
0
1,
--
cso30:c:InputProcess
threshold
--
0
1,
--
cso30:c:OutputProcess
threshold
--
0
1,
--
cso30:c:InputAssociation
threshold
--
0
1,
--
cso30:c:InputProcess
threshold
--
0
1,
--
cso30:c:OutputProcess
threshold
--
0
1,
--
cso30:c:InputAssociation
threshold
--
0
1,
--
cso30:c:InputProcess
threshold
--
0
1,
--
cso30:c:InputProcess
threshold
--
0
1,
--
cso30:c:OutputProcess
threshold
--
0
1,
--
cso30:c:InputAssociation
threshold
--
0
1,
--
cso30:c:InputProcess
threshold
--
0
1,
--
cso30:c:OutputProcess
threshold
--
0
1,
--
cso30:c:InputAssociation
threshold
--
0
1,
--
cso30:c:InputProcess
threshold
--
0
1,
--
cso30:c:InputProcess
threshold
--
0
1,
--
cso30:c:OutputProcess
threshold
--
0
1,
--
cso30:c:InputProcess
threshold
--
0
1,
--
cso30:c:InputProcess
threshold
--
0
1,
--
cso30:c:OutputProcess
threshold
--
0
1,
--
cso30:c:OutputProcess
threshold
--
0
1,
--
cso30:c:InputAssociation
threshold
--
0
1,
--
cso30:c:InputProcess
threshold
--
0
1,
--
cso30:c:InputProcess
threshold
--
0
1,
--
cso30:c:InputProcess
threshold
--
0
1,
--
cso30:c:OutputProcess
threshold
--
0
1,
--
cso30:c:OutputProcess
threshold
--
0
1,
--
cso30:c:InputProcess
threshold
--
0
1,
--
cso30:c:InputAssociation
threshold
--
0
1,
--
cso30:c:InputProcess
threshold
--
0
1,
--
cso30:c:OutputProcess
threshold
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cso30:c:InputAssociation
threshold
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cso30:c:OutputProcess
threshold
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cso30:c:InputAssociation
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cso30:c:InputProcess
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cso30:c:OutputProcess
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cso30:c:InputProcess
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cso30:c:InputProcess
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cso30:c:OutputProcess
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cso30:c:InputProcess
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cso30:c:InputAssociation
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cso30:c:InputProcess
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cso30:c:InputAssociation
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cso30:c:InputAssociation
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cso30:c:InputAssociation
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cso30:c:OutputProcess
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--