Original Literature | Model OverView |
---|---|
Publication
Title
Intracellular DNA sensors in immunity.
Affiliation
Department of Molecular Biodefense Research, Yokohama City University GraduateSchool of Medicine, 3-9 Fukuura, Kanazawaku, Yokohama, Japan.takesita@yokohama-cu.ac.jp
Abstract
Mammalian innate immunity possesses a distinct system to recognize aberrant DNAinside the cell. One class of DNA sensors is the Toll-like receptor 9, which isexpressed in the specialized immune cells, binds to single-stranded DNA in theendosome to transmit cellular signaling through myeloid differentiation primaryresponse protein 88 (MyD88). Another class of DNA sensors exists in thecytoplasm of most type of cells in the tissue, detecting double-stranded DNA tosignal through TANK-binding kinase-1 (TBK1)-mediated type-I interferonproduction and apoptosis-associated speck-like protein containing a CARD(ASC)-mediated IL-1beta secretion. Since DNA sensors have potential to recognizeaberrant DNA of both self and nonself origin, their physiological roles inmicrobial infection, tissue damage, autoimmune diseases, and DNA-basedtherapeutic applications are being intensively investigated.
PMID
18573338
|
Entity
proIL-18
--
MO000007330
cso30:c:Protein
cso30:i:CC_CellComponent
--
csml-variable:Double
m841
10
infinite
0
InterPro | IPR008996 |
TRANSPATH | MO000007330 |
--
IRF-7
--
MO000007702
cso30:c:Protein
cso30:i:CC_CellComponent
--
csml-variable:Double
m980
10
infinite
0
TRANSPATH | MO000007702 |
--
proIL-1beta
--
MO000019449
cso30:c:Protein
cso30:i:CC_CellComponent
--
csml-variable:Double
m4012
10
infinite
0
InterPro | IPR003297 |
TRANSPATH | MO000019449 |
--
IRF-7{p}
--
MO000041457
cso30:c:Protein
cso30:i:CC_CellComponent
--
csml-variable:Double
m19325
10
infinite
0
TRANSPATH | MO000041457 |
--
TLR9
--
MO000042012
cso30:c:Protein
cso30:i:CC_CellComponent
--
csml-variable:Double
m19828
10
infinite
0
TRANSPATH | MO000042012 |
--
ZBP1
--
MO000061425
cso30:c:Protein
cso30:i:CC_CellComponent
--
csml-variable:Double
m36323
10
infinite
0
TRANSPATH | MO000061425 |
--
--
e1
cso30:c:EntityBiologicalCompartment
cso30:i:CC_PlasmaMembrane
--
--
--
csml-variable:Double
m1
0
infinite
0
--
LL37
--
e10
cso30:c:Protein
cso30:i:CC_Cytoplasm
--
--
csml-variable:Double
m10
0
infinite
0
--
CpG DNA:TLR9:MYD88
--
e11
cso30:c:Complex
cso30:i:CC_EndosomeLumen
--
csml-variable:Double
m11
0
infinite
0
--
CpG DNA:TLR9:MYD88:IRAK4
--
e12
cso30:c:Complex
cso30:i:CC_EndosomeLumen
--
csml-variable:Double
m12
0
infinite
0
--
csml-variable:Double
m13
0
infinite
0
--
CpG DNA:TLR9:MYD88:IRAK4:IRAK1
--
e14
cso30:c:Complex
cso30:i:CC_Cytosol
--
csml-variable:Double
m14
0
infinite
0
--
CpG DNA:TLR9:MYD88:IRAK4:IRAK1:TRAF6
--
e15
cso30:c:Complex
cso30:i:CC_Cytosol
--
csml-variable:Double
m15
0
infinite
0
--
IRF-7{p}{ub}
--
e16
cso30:c:Protein
cso30:i:CC_Cytosol
--
csml-variable:Double
m16
0
infinite
0
--
IFN-alpha
--
e17
cso30:c:mRNA
cso30:i:CC_Nucleoplasm
--
csml-variable:Double
m17
0
infinite
0
--
IFN-alpha
--
e18
cso30:c:Protein
cso30:i:CC_Cytosol
--
csml-variable:Double
m18
0
infinite
0
--
IKK-alpha{active}
--
e19
cso30:c:Protein
cso30:i:CC_CellComponent
--
csml-variable:Double
m19
10
infinite
0
InterPro | IPR000719 |
TRANSPATH | MO000000210 |
--
--
e2
cso30:c:EntityBiologicalCompartment
cso30:i:CC_PlasmaMembrane_ExternalSideOfPlasmaMembrane_
--
--
--
csml-variable:Double
m2
0
infinite
0
--
CpG DNA:TLR9:MYD88:TRAF3
--
e20
cso30:c:Complex
cso30:i:CC_Cytosol
--
csml-variable:Double
m20
0
infinite
0
--
NF-kappaB{active}
--
e21
cso30:c:Protein
cso30:i:CC_CellComponent
--
--
csml-variable:Double
m22
10
infinite
0
TRANSPATH | MO000000058 |
--
type I interferon
--
e23
cso30:c:mRNA
cso30:i:CC_Nucleoplasm
--
--
csml-variable:Double
m24
0
infinite
0
--
type I interferon
--
e24
cso30:c:Protein
cso30:i:CC_Cytoplasm
--
--
csml-variable:Double
m25
0
infinite
0
--
IkBzeta
--
e27
cso30:c:mRNA
cso30:i:CC_Nucleoplasm
--
--
csml-variable:Double
m28
0
infinite
0
--
IKB-zeta
--
e28
cso30:c:Protein
cso30:i:CC_Nucleoplasm
--
--
csml-variable:Double
m29
0
infinite
0
--
CpG DNA:TLR9:MYD88:IRF1
--
e29
cso30:c:Complex
cso30:i:CC_Cytoplasm
--
csml-variable:Double
m30
0
infinite
0
--
--
e3
cso30:c:EntityBiologicalCompartment
cso30:i:CC_PlasmaMembrane_IntegralToPlasmaMembrane_
--
--
--
csml-variable:Double
m3
0
infinite
0
--
IFN-beta
--
e31
cso30:c:mRNA
cso30:i:CC_Nucleoplasm
--
--
csml-variable:Double
m32
0
infinite
0
--
IL12-p35
--
e32
cso30:c:mRNA
cso30:i:CC_Nucleoplasm
--
--
csml-variable:Double
m33
0
infinite
0
--
UNC93B1
--
e33
cso30:c:Protein
cso30:i:CC_Cytoplasm
--
--
csml-variable:Double
m34
0
infinite
0
--
TLR9:UNC93B1
--
e34
cso30:c:Complex
cso30:i:CC_Cytoplasm
--
--
csml-variable:Double
m35
0
infinite
0
--
csml-variable:Double
m36
0
infinite
0
--
CpG DNA:HMGB1
--
e36
cso30:c:Complex
cso30:i:CC_Extracellular
--
csml-variable:Double
m37
0
infinite
0
--
RAGEs receptor
--
e37
cso30:c:Protein
cso30:i:CC_Cytoplasm
--
--
csml-variable:Double
m38
0
infinite
0
--
CpG DNA:HMGB1:RAGEs receptor
--
e38
cso30:c:Complex
cso30:i:CC_Cytoplasm
--
csml-variable:Double
m39
0
infinite
0
--
PDC-TREM
--
e39
cso30:c:Protein
cso30:i:CC_Cytoplasm
--
csml-variable:Double
m40
0
infinite
0
--
--
e4
cso30:c:EntityBiologicalCompartment
cso30:i:CC_PlasmaMembrane_InternalSideOfPlasmaMembrane_
--
--
--
csml-variable:Double
m4
0
infinite
0
--
plexin A1
--
e40
cso30:c:Protein
cso30:i:CC_Cytoplasm
--
--
csml-variable:Double
m41
0
infinite
0
--
DAP12
--
e41
cso30:c:Protein
cso30:i:CC_Cytoplasm
--
--
csml-variable:Double
m42
0
infinite
0
--
PDC-TREM:plexin A1:DAP12
--
e42
cso30:c:Complex
cso30:i:CC_Cytoplasm
--
csml-variable:Double
m43
0
infinite
0
--
PDC-TREM
--
e43
cso30:c:mRNA
cso30:i:CC_Nucleoplasm
--
--
csml-variable:Double
m44
0
infinite
0
--
self DNA:LL37
--
e44
cso30:c:Complex
cso30:i:CC_Cytoplasm
--
--
csml-variable:Double
m45
0
infinite
0
--
self DNA
--
e45
cso30:c:Dna
cso30:i:CC_Cytoplasm
--
--
csml-variable:Double
m46
0
infinite
0
--
RIG-I
--
e46
cso30:c:Protein
cso30:i:CC_Cytoplasm
--
--
csml-variable:Double
m47
0
infinite
0
--
dsRNA:RIG-I
--
e47
cso30:c:Complex
cso30:i:CC_Cytoplasm
--
--
csml-variable:Double
m48
0
infinite
0
--
csml-variable:Double
m49
0
infinite
0
--
B-DNA:ZBP1
--
e49
cso30:c:Complex
cso30:i:CC_Cytoplasm
--
--
csml-variable:Double
m63
0
infinite
0
--
CpG DNA:TLR9
--
e5
cso30:c:Complex
cso30:i:CC_EndosomeLumen
--
csml-variable:Double
m5
0
infinite
0
--
--
e50
cso30:c:EntityBiologicalCompartment
cso30:i:CC_NuclearEnvelopeLumen
--
--
--
csml-variable:Double
m50
0
infinite
0
--
--
e51
cso30:c:EntityBiologicalCompartment
cso30:i:CC_NuclearPore
--
--
--
csml-variable:Double
m51
0
infinite
0
--
--
e52
cso30:c:EntityBiologicalCompartment
cso30:i:CC_NuclearInnerMembrane
--
--
--
csml-variable:Double
m52
0
infinite
0
--
--
e53
cso30:c:EntityBiologicalCompartment
cso30:i:CC_NuclearLumen
--
--
--
csml-variable:Double
m53
0
infinite
0
--
--
e54
cso30:c:EntityBiologicalCompartment
cso30:i:CC_NuclearOuterMembrane
--
--
--
csml-variable:Double
m54
0
infinite
0
--
--
e55
cso30:c:EntityBiologicalCompartment
cso30:i:CC_Nucleus
--
--
--
csml-variable:Double
m55
0
infinite
0
--
--
e56
cso30:c:EntityBiologicalCompartment
cso30:i:CC_Nucleoplasm
--
--
--
csml-variable:Double
m56
0
infinite
0
--
--
e57
cso30:c:EntityBiologicalCompartment
cso30:i:CC_NuclearBody
--
--
--
csml-variable:Double
m57
0
infinite
0
--
--
e58
cso30:c:EntityBiologicalCompartment
cso30:i:CC_Nucleolus
--
--
--
csml-variable:Double
m58
0
infinite
0
--
--
e59
cso30:c:EntityBiologicalCompartment
cso30:i:CC_NuclearEnvelope
--
--
--
csml-variable:Double
m59
0
infinite
0
--
--
e60
cso30:c:EntityBiologicalCompartment
cso30:i:CC_Chromatin
--
--
--
csml-variable:Double
m60
0
infinite
0
--
--
e61
cso30:c:EntityBiologicalCompartment
cso30:i:CC_NuclearChromosome
--
--
--
csml-variable:Double
m61
0
infinite
0
--
--
e62
cso30:c:EntityBiologicalCompartment
cso30:i:CC_NuclearCentromere
--
--
--
csml-variable:Double
m62
0
infinite
0
--
ZBP1:TBK1
--
e63
cso30:c:Complex
cso30:i:CC_Cytoplasm
--
--
csml-variable:Double
m64
0
infinite
0
--
ZBP1:IRF3
--
e64
cso30:c:Complex
cso30:i:CC_Cytoplasm
--
--
csml-variable:Double
m65
0
infinite
0
--
ZBP1 oligomer
--
e65
cso30:c:Complex
cso30:i:CC_Cytoplasm
--
--
csml-variable:Double
m66
0
infinite
0
--
Caspase-1{active}
--
e66
cso30:c:Protein
cso30:i:CC_CellComponent
--
csml-variable:Double
m67
10
infinite
0
TRANSPATH | MO000016828 |
--
ASC
--
e67
cso30:c:Protein
cso30:i:CC_Cytoplasm
--
--
csml-variable:Double
m68
0
infinite
0
--
pyrin
--
e68
cso30:c:Protein
cso30:i:CC_Cytoplasm
--
--
csml-variable:Double
m69
0
infinite
0
--
ASC:pyrin
--
e69
cso30:c:Complex
cso30:i:CC_Cytoplasm
--
csml-variable:Double
m70
0
infinite
0
--
--
e7
cso30:c:EntityBiologicalCompartment
cso30:i:CC_Cell
--
--
--
csml-variable:Double
m7
0
infinite
0
--
IL-18
--
e70
cso30:c:mRNA
cso30:i:CC_Cytoplasm
--
--
csml-variable:Double
m71
0
infinite
0
--
csml-variable:Double
m72
0
infinite
0
--
proIL-33
--
e72
cso30:c:Protein
cso30:i:CC_Cell_WithoutCellWall_
--
csml-variable:Double
m73
0
infinite
0
--
IL-33
--
e73
cso30:c:Protein
cso30:i:CC_Extracellular
--
--
csml-variable:Double
m74
0
infinite
0
--
self DNA:Ig complex
--
e74
cso30:c:Complex
cso30:i:CC_Extracellular
--
csml-variable:Double
m75
0
infinite
0
--
FcgammaRIIA
--
e75
cso30:c:Protein
cso30:i:CC_PlasmaMembrane_IntegralToPlasmaMembrane_
--
csml-variable:Double
m76
0
infinite
0
--
self DNA:Ig complex:FcgammaRIIa
--
e76
cso30:c:Complex
cso30:i:CC_Extracellular
--
csml-variable:Double
m77
0
infinite
0
--
FcgammaRIII
--
e77
cso30:c:Protein
cso30:i:CC_PlasmaMembrane_IntegralToPlasmaMembrane_
--
csml-variable:Double
m78
0
infinite
0
--
self DNA:Ig complex:FcgammaRIII
--
e78
cso30:c:Complex
cso30:i:CC_PlasmaMembrane_IntegralToPlasmaMembrane_
--
csml-variable:Double
m79
0
infinite
0
--
self DNA:Ig complex:TLR9
--
e79
cso30:c:Complex
cso30:i:CC_Cytoplasm
--
csml-variable:Double
m80
0
infinite
0
--
--
e8
cso30:c:EntityBiologicalCompartment
cso30:i:CC_Cell_WithoutCellWall_
--
--
--
csml-variable:Double
m8
0
infinite
0
--
--
e9
cso30:c:EntityBiologicalCompartment
cso30:i:CC_Cytoplasm
--
--
--
csml-variable:Double
m9
0
infinite
0
--
--
and
mass
coefficient1:0.1
coefficient2:1.0
stoichiometry:c1 : 1
stoichiometry:c3 : 1
stoichiometry:c2 : 1
m19828*m36*0.1
nodelay
--
0
PMID: 18573338, 17572678 Its homodimerized form binds endocytosed CpG DNA through its ectodomain.
p10
p10
cso30:i:ME_UnknownActivation
cso30:i:CC_Cytoplasm
--
--
and
mass
coefficient1:0.1
coefficient2:1.0
stoichiometry:c26 : 1
stoichiometry:c28 : 1
stoichiometry:c27 : 1
m181*m15*0.1
nodelay
--
0
PMID: 18573338, 18262306 CpG-A activates kinases, such as IRAK1 and I¦ÊB kinase-¦Á (IKK-¦Á), and an E3 ligase, TRAF6, resulting in phosphorylation and ubiquitination of IRF-7, and robust production of IFN-¦Á.
p11
p11
cso30:i:ME_Phosphorylation
cso30:i:CC_Cytosol
--
--
and
mass
coefficient1:0.1
coefficient2:1.0
stoichiometry:c29 : 1
stoichiometry:c31 : 1
stoichiometry:c30 : 1
m980*m19*0.1
nodelay
--
0
PMID: 18573338, 18262306 CpG-A activates kinases, such as IRAK1 and I¦ÊB kinase-¦Á (IKK-¦Á), and an E3 ligase, TRAF6, resulting in phosphorylation and ubiquitination of IRF-7, and robust production of IFN-¦Á.
--
and
mass
coefficient1:0.1
coefficient2:1.0
stoichiometry:c32 : 1
stoichiometry:c33 : 1
stoichiometry:c34 : 1
m1872*m11*0.1
nodelay
--
0
PMID: 18573338 CpG-A-induces TRAF3 recruitment to the complex consisting of activated (=dimerized) MyD88, triggering type-I IFN production in pDCs.
p13
p13
cso30:i:ME_UnknownActivation
cso30:i:CC_Cytosol
--
--
and
mass
coefficient1:0.1
coefficient2:1.0
stoichiometry:c35 : 1
stoichiometry:c37 : 1
stoichiometry:c36 : 1
m21*m19*0.1
nodelay
--
0
PMID: 18573338 CpG-B elicits activation of mitogen-activated protein (MAP) kinases and NF-¦ÊB through TRAF6, which is pivotal for proinflammatory cytokine and chemokine gene expression.
p14
p14
cso30:i:ME_UnknownActivation
cso30:i:CC_Cytoplasm
--
--
and
mass
coefficient1:0.1
coefficient2:1.0
stoichiometry:c38 : 1
stoichiometry:c40 : 1
stoichiometry:c39 : 1
m1812*m15*0.1
nodelay
--
0
PMID: 18573338 CpG-B elicits activation of mitogen-activated protein (MAP) kinases and NF-¦ÊB through TRAF6, which is pivotal for proinflammatory cytokine and chemokine gene expression.
--
and
mass
coefficient1:0.1
coefficient2:1.0
stoichiometry:c41 : 1
stoichiometry:c43 : 1
stoichiometry:c42 : 1
m24*m20*0.1
nodelay
--
0
PMID: 18573338 CpG-A-induces TRAF3 recruitment to the complex consisting of activated (=dimerized) MyD88, triggering type-I IFN production in pDCs.
p16
p16
cso30:i:ME_UnknownActivation
cso30:i:CC_Cytosol
--
--
and
mass
coefficient1:0.1
coefficient2:1.0
stoichiometry:c44 : 1
stoichiometry:c46 : 1
stoichiometry:c45 : 1
m3902*m20*0.1
nodelay
--
0
PMID: 18573338 In cDCs and macrophages, TRAF3 coordinates TANK-binding kinase-1 (TBK1)-mediated phosphorylation of IRF-7 for type-I IFN production, while TRAF6 mediates NF-¦ÊB activation to induce proinflammatory cytokine production.
p17
p17
cso30:i:ME_Phosphorylation
cso30:i:CC_Cytoplasm
--
--
and
mass
coefficient1:0.1
coefficient2:1.0
stoichiometry:c47 : 1
stoichiometry:c49 : 1
stoichiometry:c48 : 1
m980*m26*0.1
nodelay
--
0
PMID: 18573338 In cDCs and macrophages, TRAF3 coordinates TANK-binding kinase-1 (TBK1)-mediated phosphorylation of IRF-7 for type-I IFN production, while TRAF6 mediates NF-¦ÊB activation to induce proinflammatory cytokine production.
p18
p18
cso30:i:ME_UnknownActivation
cso30:i:CC_Cytoplasm
--
--
and
mass
coefficient1:0.1
coefficient2:1.0
stoichiometry:c50 : 1
stoichiometry:c52 : 1
stoichiometry:c51 : 1
m979*m5*0.1
nodelay
--
0
PMID: 18573338, 17457343 CpG-B also induces activation of IRF-5 and production of IkB¦Æ to facilitate the transcriptional regulation of the proinflammatory cytokine genes.
--
and
mass
coefficient1:0.1
coefficient2:1.0
stoichiometry:c54 : 1
stoichiometry:c55 : 1
stoichiometry:c53 : 1
m28*m27*0.1
nodelay
--
0
PMID: 18573338, 17457343 CpG-B also induces activation of IRF-5 and production of IkB¦Æ to facilitate the transcriptional regulation of the proinflammatory cytokine genes.
--
and
mass
coefficient1:0.1
coefficient2:1.0
stoichiometry:c4 : 1
stoichiometry:c5 : 1
stoichiometry:c6 : 1
m5*m1572*0.1
nodelay
--
0
PMID: 18573338, 17572678 Its homodimerized form binds endocytosed CpG DNA through its ectodomain, changes its conformation, and allosterically transmits signaling through the cytoplasmic Toll/IL-1 receptor domain interaction with myeloid differentiation factor 88 (MyD88), TNF receptor-associated factor 6 (TRAF6), and IL-1 receptor-associated kinase 1 (IRAK1) and IRAK4.
--
and
mass
coefficient1:0.1
coefficient2:1.0
stoichiometry:c56 : 1
stoichiometry:c57 : 1
stoichiometry:c58 : 1
m970*m11*0.1
nodelay
--
0
PMID: 18573338, 17018642, 17273999 CpG-B induces IRF-1 interaction with MyD88, which crucially licenses IRF-1 transmigration into the nucleus and TLR9-mediated gene-induction programs such as IFN-¦Â, inducible NO synthetase, and IL-12 p35.
--
and
mass
coefficient1:0.1
coefficient2:1.0
stoichiometry:c59 : 1
stoichiometry:c60 : 1
stoichiometry:c61 : 1
m30*0.1
nodelay
--
0
PMID: 18573338, 17018642, 17273999 CpG-B induces IRF-1 interaction with MyD88, which crucially licenses IRF-1 transmigration into the nucleus and TLR9-mediated gene-induction programs such as IFN-¦Â, inducible NO synthetase, and IL-12 p35.
--
and
mass
coefficient1:0.1
coefficient2:1.0
stoichiometry:c63 : 1
stoichiometry:c62 : 1
m31*0.1
nodelay
--
0
PMID: 18573338, 17018642, 17273999 CpG-B induces IRF-1 interaction with MyD88, which crucially licenses IRF-1 transmigration into the nucleus and TLR9-mediated gene-induction programs such as IFN-¦Â, inducible NO synthetase, and IL-12 p35.
--
and
mass
coefficient1:0.1
coefficient2:1.0
stoichiometry:c65 : 1
stoichiometry:c64 : 1
m31*0.1
nodelay
--
0
PMID: 18573338, 17018642, 17273999 CpG-B induces IRF-1 interaction with MyD88, which crucially licenses IRF-1 transmigration into the nucleus and TLR9-mediated gene-induction programs such as IFN-¦Â, inducible NO synthetase, and IL-12 p35.
--
and
mass
coefficient1:0.1
coefficient2:1.0
stoichiometry:c67 : 1
stoichiometry:c66 : 1
m31*0.1
nodelay
--
0
PMID: 18573338, 17018642, 17273999 CpG-B induces IRF-1 interaction with MyD88, which crucially licenses IRF-1 transmigration into the nucleus and TLR9-mediated gene-induction programs such as IFN-¦Â, inducible NO synthetase, and IL-12 p35.
--
and
mass
coefficient1:0.1
coefficient2:1.0
stoichiometry:c68 : 1
stoichiometry:c69 : 1
stoichiometry:c70 : 1
m19828*m34*0.1
nodelay
--
0
PMID: 18573338, 17452530, 18305481 Recently, a polytopic membrane protein, UNC93B1, was demonstrated to directly associate with TLR9 and crucially regulate its function by directing subcellular trafficking.
--
and
mass
coefficient1:0.1
coefficient2:1.0
stoichiometry:c71 : 1
stoichiometry:c72 : 1
stoichiometry:c73 : 1
m36*m22603*0.1
nodelay
--
0
PMID: 18573338 Recombinant HMGB1 protein directly associates with CpG-A.
--
and
mass
coefficient1:0.1
coefficient2:1.0
stoichiometry:c74 : 1
stoichiometry:c75 : 1
stoichiometry:c76 : 1
m37*m38*0.1
nodelay
--
0
--
and
mass
coefficient1:0.1
coefficient2:1.0
stoichiometry:c78 : 1
stoichiometry:c79 : 1
stoichiometry:c77 : 1
m17*m39*0.1
nodelay
--
0
PMID: 18573338, 17417641 Coadministration of HMGB1 with CpG-A synergistically activates pDCs to produce IFN-¦Á through the association with cell surface receptor for advanced glycosylation end products (RAGEs).
--
and
mass
coefficient1:0.1
coefficient2:1.0
stoichiometry:c80 : 1
stoichiometry:c81 : 1
stoichiometry:c82 : 1
stoichiometry:c83 : 1
m40*m41*m42*0.1
nodelay
--
0
PMID: 18573338, 18287072 pDCs express a cell type-specific variant of triggering receptor expressed in myeloid cell (TREM) family members, PDC-TREM, which associates with cell surface semaphorin receptor plexin-A1 and adaptor protein DNAX-activation protein 12 (DAP12)
--
and
mass
coefficient1:0.1
coefficient2:1.0
stoichiometry:c7 : 1
stoichiometry:c8 : 1
stoichiometry:c9 : 1
m11*m17258*0.1
nodelay
--
0
PMID: 18573338, 17572678 Its homodimerized form binds endocytosed CpG DNA through its ectodomain, changes its conformation, and allosterically transmits signaling through the cytoplasmic Toll/IL-1 receptor domain interaction with myeloid differentiation factor 88 (MyD88), TNF receptor-associated factor 6 (TRAF6), and IL-1 receptor-associated kinase 1 (IRAK1) and IRAK4.
--
and
mass
coefficient1:0.1
coefficient2:1.0
stoichiometry:c84 : 1
stoichiometry:c86 : 1
stoichiometry:c85 : 1
m44*m36*0.1
nodelay
--
0
PMID: 18573338, 18287072 Cell surface expression of PDC-TREM is upregulated upon CpG-A stimulation, whereas neutralization or knock down of this molecule result in a significant reduction of CpG-A-induced IFN-¦Á production, suggesting that PDC-TREM is engaged in DAP12-mediated positive-feedback signal amplification to trigger robust production of IFN-¦Á.
--
and
mass
coefficient1:0.1
coefficient2:1.0
stoichiometry:c87 : 1
stoichiometry:c90 : 1
stoichiometry:c88 : 1
m17*m43*0.1
nodelay
--
0
PMID: 18573338, 18287072 Cell surface expression of PDC-TREM is upregulated upon CpG-A stimulation, whereas neutralization or knock down of this molecule result in a significant reduction of CpG-A-induced IFN-¦Á production, suggesting that PDC-TREM is engaged in DAP12-mediated positive-feedback signal amplification to trigger robust production of IFN-¦Á.
--
and
mass
coefficient1:0.1
coefficient2:1.0
stoichiometry:c92 : 1
stoichiometry:c91 : 1
stoichiometry:c93 : 1
m10*m46*0.1
nodelay
--
0
PMID: 18573338, 17873860 Recently, antimicrobial peptide LL37 (also known as cathelicidin antimicrobial peptide), overexpressed in psoriatic skin, was demonstrated to interact with self-DNA to form aggregated structures, which are also delivered to and retained in the early endosomes to trigger TLR9-mediated innate immune activation.
--
and
mass
coefficient1:0.1
coefficient2:1.0
stoichiometry:c94 : 1
stoichiometry:c95 : 1
stoichiometry:c96 : 1
m119368*m47*0.1
nodelay
--
0
PMID: 18573338, 17517627 in vitro analysis demonstrated that RIG-I directly binds to 5¡ì-triphosphorylated RNA but not to B-DNA.
--
and
mass
coefficient1:0.1
coefficient2:1.0
stoichiometry:c97 : 1
stoichiometry:c98 : 1
stoichiometry:c99 : 1
m36323*m49*0.1
nodelay
--
0
PMID: 18573338 ZBP1/DAI physically interacts with B-DNA and downstream signaling molecules TBK1 and IRF-3.
p35
p35
cso30:i:ME_Binding
cso30:i:CC_Cytoplasm
--
--
and
mass
coefficient1:0.1
coefficient2:1.0
stoichiometry:c100 : 1
stoichiometry:c101 : 1
stoichiometry:c102 : 1
m3902*m36323*0.1
nodelay
--
0
PMID: 18573338 ZBP1/DAI physically interacts with B-DNA and downstream signaling molecules TBK1 and IRF-3.
p36
p36
cso30:i:ME_Binding
cso30:i:CC_Cytoplasm
--
--
and
mass
coefficient1:0.1
coefficient2:1.0
stoichiometry:c103 : 1
stoichiometry:c105 : 1
stoichiometry:c104 : 1
m36323*m977*0.1
nodelay
--
0
PMID: 18573338 ZBP1/DAI physically interacts with B-DNA and downstream signaling molecules TBK1 and IRF-3.
p37
p37
cso30:i:ME_Oligomerization
cso30:i:CC_Cytoplasm
--
--
and
mass
coefficient1:0.1
coefficient2:1.0
stoichiometry:c106 : 1
stoichiometry:c108 : 1
stoichiometry:c107 : 1
m36323*m49*0.1
nodelay
--
0
PMID: 18573338, 18375758 B-DNA induces oligomerization of ZBP1/DAI that has been overexpressed in L929 cells, whereas artificially oligomerized ZBP/DAI alone can activate signaling, suggesting that oligomerization of ZBP/DAI is a crucial step for B-DNA-mediated signaling.
--
and
mass
coefficient1:0.1
coefficient2:1.0
stoichiometry:c111 : 1
stoichiometry:c112 : 1
stoichiometry:c113 : 1
m69*m68*0.1
nodelay
--
0
PMID: 18573338, 17964261, 17599095 ASC plays an alternative role in pyroptosome by associating with a noninflammasome protein, pyrin, for caspase-1 activation in a process leading to a distinct form of cell death, pyroptosis.
p39
p39
cso30:i:ME_UnknownActivation
cso30:i:CC_Cytoplasm
--
--
and
mass
coefficient1:0.1
coefficient2:1.0
stoichiometry:c109 : 1
stoichiometry:c114 : 1
stoichiometry:c110 : 1
m1765*m70*0.1
nodelay
--
0
PMID: 18573338, 17964261, 17599095 ASC plays an alternative role in pyroptosome by associating with a noninflammasome protein, pyrin, for caspase-1 activation in a process leading to a distinct form of cell death, pyroptosis.
--
and
mass
coefficient1:0.1
coefficient2:1.0
stoichiometry:c10 : 1
stoichiometry:c11 : 1
stoichiometry:c12 : 1
m12*m13*0.1
nodelay
--
0
PMID: 18573338, 17572678 Its homodimerized form binds endocytosed CpG DNA through its ectodomain, changes its conformation, and allosterically transmits signaling through the cytoplasmic Toll/IL-1 receptor domain interaction with myeloid differentiation factor 88 (MyD88), TNF receptor-associated factor 6 (TRAF6), and IL-1 receptor-associated kinase 1 (IRAK1) and IRAK4.
p40
p40
cso30:i:ME_Translation
cso30:i:CC_Cytoplasm
--
--
and
mass
coefficient1:0.1
coefficient2:1.0
stoichiometry:c115 : 1
stoichiometry:c120 : 1
stoichiometry:c116 : 1
m93364*m49*0.1
nodelay
--
0
PMID: 18573338 B-DNA-mediated production of proinflammatory cytokines such as IL-1¦Â, IL-18, and IL-33 whose secretion are regulated by caspase-1.
p41
p41
cso30:i:ME_Processing
cso30:i:CC_Cytoplasm
--
--
and
mass
coefficient1:0.1
coefficient2:1.0
stoichiometry:c117 : 1
stoichiometry:c119 : 1
stoichiometry:c118 : 1
m4012*m67*0.1
nodelay
--
0
PMID: 18573338 B-DNA-mediated production of proinflammatory cytokines such as IL-1¦Â, IL-18, and IL-33 whose secretion are regulated by caspase-1.
p42
p42
cso30:i:ME_Processing
cso30:i:CC_Cytoplasm
--
--
and
mass
coefficient1:0.1
coefficient2:1.0
stoichiometry:c123 : 1
stoichiometry:c125 : 1
stoichiometry:c124 : 1
m841*m67*0.1
nodelay
--
0
PMID: 18573338 B-DNA-mediated production of proinflammatory cytokines such as IL-1¦Â, IL-18, and IL-33 whose secretion are regulated by caspase-1.
--
and
mass
coefficient1:0.1
coefficient2:1.0
stoichiometry:c122 : 1
stoichiometry:c131 : 1
stoichiometry:c121 : 1
m71*m49*0.1
nodelay
--
0
PMID: 18573338 B-DNA-mediated production of proinflammatory cytokines such as IL-1¦Â, IL-18, and IL-33 whose secretion are regulated by caspase-1.
--
and
mass
coefficient1:0.1
coefficient2:1.0
stoichiometry:c126 : 1
stoichiometry:c132 : 1
stoichiometry:c127 : 1
m72*m49*0.1
nodelay
--
0
PMID: 18573338 B-DNA-mediated production of proinflammatory cytokines such as IL-1¦Â, IL-18, and IL-33 whose secretion are regulated by caspase-1.
--
and
mass
coefficient1:0.1
coefficient2:1.0
stoichiometry:c128 : 1
stoichiometry:c130 : 1
stoichiometry:c129 : 1
m73*m67*0.1
nodelay
--
0
PMID: 18573338 B-DNA-mediated production of proinflammatory cytokines such as IL-1¦Â, IL-18, and IL-33 whose secretion are regulated by caspase-1.
--
and
mass
coefficient1:0.1
coefficient2:1.0
stoichiometry:c133 : 1
stoichiometry:c134 : 1
stoichiometry:c135 : 1
m75*m76*0.1
nodelay
--
0
PMID: 18573338 Human Fc¦ÃRIIa or mouse Fc¦ÃRIII is an essential player for TLR9 sensing of the self-DNA?Ig complex inside the cell.
--
and
mass
coefficient1:0.1
coefficient2:1.0
stoichiometry:c136 : 1
stoichiometry:c137 : 1
stoichiometry:c138 : 1
m78*m75*0.1
nodelay
--
0
PMID: 18573338 Human Fc¦ÃRIIa or mouse Fc¦ÃRIII is an essential player for TLR9 sensing of the self-DNA?Ig complex inside the cell.
--
and
mass
coefficient1:0.1
coefficient2:1.0
stoichiometry:c139 : 1
stoichiometry:c140 : 1
stoichiometry:c141 : 1
stoichiometry:c142 : 1
m79*m19828*0.1
nodelay
--
0
PMID: 18573338 Human Fc¦ÃRIIa or mouse Fc¦ÃRIII is an essential player for TLR9 sensing of the self-DNA?Ig complex inside the cell. PMID: 18573338 chromatin?IgG complex is delivered to the TLR9-containing endosomes in a human Fc¦ÃRIIa-dependent manner or mouse Fc¦ÃRIII-dependent manner
--
and
mass
coefficient1:0.1
coefficient2:1.0
stoichiometry:c143 : 1
stoichiometry:c144 : 1
stoichiometry:c145 : 1
stoichiometry:c146 : 1
m19828*m77*0.1
nodelay
--
0
PMID: 18573338 Human Fc¦ÃRIIa or mouse Fc¦ÃRIII is an essential player for TLR9 sensing of the self-DNA?Ig complex inside the cell. PMID: 18573338 chromatin?IgG complex is delivered to the TLR9-containing endosomes in a human Fc¦ÃRIIa-dependent manner or mouse Fc¦ÃRIII-dependent manner
--
and
mass
coefficient1:0.1
coefficient2:1.0
stoichiometry:c13 : 1
stoichiometry:c14 : 1
stoichiometry:c15 : 1
m14*m183*0.1
nodelay
--
0
PMID: 18573338, 17572678 Its homodimerized form binds endocytosed CpG DNA through its ectodomain, changes its conformation, and allosterically transmits signaling through the cytoplasmic Toll/IL-1 receptor domain interaction with myeloid differentiation factor 88 (MyD88), TNF receptor-associated factor 6 (TRAF6), and IL-1 receptor-associated kinase 1 (IRAK1) and IRAK4.
p6
p6
cso30:i:ME_Phosphorylation
cso30:i:CC_Cytosol
--
--
and
mass
coefficient1:0.1
coefficient2:1.0
stoichiometry:c16 : 1
stoichiometry:c18 : 1
stoichiometry:c17 : 1
m980*m14*0.1
nodelay
--
0
PMID: 18573338, 18262306 CpG-A activates kinases, such as IRAK1 and I¦ÊB kinase-¦Á (IKK-¦Á), and an E3 ligase, TRAF6, resulting in phosphorylation and ubiquitination of IRF-7, and robust production of IFN-¦Á.
--
and
mass
coefficient1:0.1
coefficient2:1.0
stoichiometry:c19 : 1
stoichiometry:c21 : 1
stoichiometry:c20 : 1
m19325*m15*0.1
nodelay
--
0
PMID: 18573338, 18262306 CpG-A activates kinases, such as IRAK1 and I¦ÊB kinase-¦Á (IKK-¦Á), and an E3 ligase, TRAF6, resulting in phosphorylation and ubiquitination of IRF-7, and robust production of IFN-¦Á.
--
and
mass
coefficient1:0.1
coefficient2:1.0
stoichiometry:c23 : 1
stoichiometry:c22 : 1
m17*0.1
nodelay
--
0
PMID: 18573338, 18262306 CpG-A activates kinases, such as IRAK1 and I¦ÊB kinase-¦Á (IKK-¦Á), and an E3 ligase, TRAF6, resulting in phosphorylation and ubiquitination of IRF-7, and robust production of IFN-¦Á.
--
and
mass
coefficient1:0.1
coefficient2:1.0
stoichiometry:c25 : 1
stoichiometry:c24 : 1
m16*0.1
nodelay
--
0
PMID: 18573338, 18262306 CpG-A activates kinases, such as IRAK1 and I¦ÊB kinase-¦Á (IKK-¦Á), and an E3 ligase, TRAF6, resulting in phosphorylation and ubiquitination of IRF-7, and robust production of IFN-¦Á.
cso30:c:InputProcess
threshold
--
0
1,
--
cso30:c:InputProcess
threshold
--
0
1,
--
cso30:c:OutputProcess
threshold
--
0
1,
--
cso30:c:InputProcess
threshold
--
0
1,
--
cso30:c:InputProcess
threshold
--
0
1,
--
cso30:c:InputAssociation
threshold
--
0
1,
--
cso30:c:InputProcess
threshold
--
0
1,
--
cso30:c:OutputProcess
threshold
--
0
1,
--
cso30:c:InputAssociation
threshold
--
0
1,
--
cso30:c:InputAssociation
threshold
--
0
1,
--
cso30:c:OutputProcess
threshold
--
0
1,
--
cso30:c:InputProcess
threshold
--
0
1,
--
cso30:c:InputAssociation
threshold
--
0
1,
--
cso30:c:OutputProcess
threshold
--
0
1,
--
cso30:c:InputAssociation
threshold
--
0
1,
--
cso30:c:InputAssociation
threshold
--
0
1,
--
cso30:c:InputProcess
threshold
--
0
1,
--
cso30:c:OutputProcess
threshold
--
0
1,
--
cso30:c:InputAssociation
threshold
--
0
1,
--
cso30:c:InputAssociation
threshold
--
0
1,
--
cso30:c:InputAssociation
threshold
--
0
1,
--
cso30:c:InputAssociation
threshold
--
0
1,
--
cso30:c:InputAssociation
threshold
--
0
1,
--
cso30:c:InputProcess
threshold
--
0
1,
--
cso30:c:OutputProcess
threshold
--
0
1,
--
cso30:c:InputProcess
threshold
--
0
1,
--
cso30:c:InputProcess
threshold
--
0
1,
--
cso30:c:InputProcess
threshold
--
0
1,
--
cso30:c:InputProcess
threshold
--
0
1,
--
cso30:c:OutputProcess
threshold
--
0
1,
--
cso30:c:OutputProcess
threshold
--
0
1,
--
cso30:c:InputProcess
threshold
--
0
1,
--
cso30:c:InputProcess
threshold
--
0
1,
--
cso30:c:OutputProcess
threshold
--
0
1,
--
cso30:c:OutputProcess
threshold
--
0
1,
--
cso30:c:OutputProcess
threshold
--
0
1,
--
cso30:c:OutputProcess
threshold
--
0
1,
--
cso30:c:InputAssociation
threshold
--
0
1,
--
cso30:c:OutputProcess
threshold
--
0
1,
--
cso30:c:InputAssociation
threshold
--
0
1,
--
cso30:c:InputAssociation
threshold
--
0
1,
--
cso30:c:InputAssociation
threshold
--
0
1,
--
cso30:c:OutputProcess
threshold
--
0
1,
--
cso30:c:InputAssociation
threshold
--
0
1,
--
cso30:c:InputProcess
threshold
--
0
1,
--
cso30:c:OutputProcess
threshold
--
0
1,
--
cso30:c:InputAssociation
threshold
--
0
1,
--
cso30:c:InputProcess
threshold
--
0
1,
--
cso30:c:InputProcess
threshold
--
0
1,
--
cso30:c:OutputProcess
threshold
--
0
1,
--
cso30:c:InputAssociation
threshold
--
0
1,
--
cso30:c:OutputProcess
threshold
--
0
1,
--
cso30:c:InputProcess
threshold
--
0
1,
--
cso30:c:InputAssociation
threshold
--
0
1,
--
cso30:c:InputAssociation
threshold
--
0
1,
--
cso30:c:OutputProcess
threshold
--
0
1,
--
cso30:c:InputAssociation
threshold
--
0
1,
--
cso30:c:InputProcess
threshold
--
0
1,
--
cso30:c:InputAssociation
threshold
--
0
1,
--
cso30:c:InputProcess
threshold
--
0
1,
--
cso30:c:OutputProcess
threshold
--
0
1,
--
cso30:c:InputAssociation
threshold
--
0
1,
--
cso30:c:OutputProcess
threshold
--
0
1,
--
cso30:c:InputAssociation
threshold
--
0
1,
--
cso30:c:InputAssociation
threshold
--
0
1,
--
cso30:c:InputAssociation
threshold
--
0
1,
--
cso30:c:InputProcess
threshold
--
0
1,
--
cso30:c:InputProcess
threshold
--
0
1,
--
cso30:c:OutputProcess
threshold
--
0
1,
--
cso30:c:OutputProcess
threshold
--
0
1,
--
cso30:c:InputAssociation
threshold
--
0
1,
--
cso30:c:InputAssociation
threshold
--
0
1,
--
cso30:c:InputAssociation
threshold
--
0
1,
--
cso30:c:InputProcess
threshold
--
0
1,
--
cso30:c:InputProcess
threshold
--
0
1,
--
cso30:c:OutputProcess
threshold
--
0
1,
--
cso30:c:InputProcess
threshold
--
0
1,
--
cso30:c:InputProcess
threshold
--
0
1,
--
cso30:c:InputProcess
threshold
--
0
1,
--
cso30:c:OutputProcess
threshold
--
0
1,
--
cso30:c:InputAssociation
threshold
--
0
1,
--
cso30:c:InputAssociation
threshold
--
0
1,
--
cso30:c:InputProcess
threshold
--
0
1,
--
cso30:c:InputProcess
threshold
--
0
1,
--
cso30:c:InputProcess
threshold
--
0
1,
--
cso30:c:InputAssociation
threshold
--
0
1,
--
cso30:c:OutputProcess
threshold
--
0
1,
--
cso30:c:InputAssociation
threshold
--
0
1,
--
cso30:c:InputAssociation
threshold
--
0
1,
--
cso30:c:OutputProcess
threshold
--
0
1,
--
cso30:c:InputAssociation
threshold
--
0
1,
--
cso30:c:OutputProcess
threshold
--
0
1,
--
cso30:c:InputProcess
threshold
--
0
1,
--
cso30:c:OutputProcess
threshold
--
0
1,
--
cso30:c:OutputProcess
threshold
--
0
1,
--